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Keywords = pathological phenomena identification

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27 pages, 439 KiB  
Article
The Forgotten Language of Nontheistic Mysticism: Religious Factors in Erich Fromm’s Humanism
by Ronen Pinkas
Religions 2024, 15(5), 531; https://doi.org/10.3390/rel15050531 - 25 Apr 2024
Cited by 1 | Viewed by 2489
Abstract
In You Shall Be as Gods, Erich Fromm (1900–1980) defines his position as nontheistic mysticism. This research clarifies the term, considers its importance within Fromm’s humanism, and explores its potential origins. The nontheistic mystical position plays a central role in Fromm’s understanding [...] Read more.
In You Shall Be as Gods, Erich Fromm (1900–1980) defines his position as nontheistic mysticism. This research clarifies the term, considers its importance within Fromm’s humanism, and explores its potential origins. The nontheistic mystical position plays a central role in Fromm’s understanding of the relationship between mysticism and organized religion, religion and religiosity, and it clarifies the relationship between religion, philosophy, and social psychoanalysis, whose combination constitutes his humanistic ethics. Nontheistic mysticism relates, as well, to Fromm’s understanding of human nature; it involves the question of the relationship between language, perception, and experience. The nontheistic mystical position is linked to Fromm’s negative theology, the x experience, and idolatry. Hence, the nontheistic mystical position is relevant to Fromm’s understanding of self-realization and his vision of a sane society. Unlike some scholarly opinion, the conclusions of this paper suggest that Fromm’s humanism is not radical, as long as radical is defined as an absolute atheistic secular feature that eliminates the range of religious language and experience. Rather, it is a broad and cautious humanism that, on the one hand, internalizes the transcendent divinity into the human subject and transforms it into anthropological–ethical phenomena, but, on the other, implies that atheism carries the risk of an idolatrous identification of the human being with God. Consequently, this humanism requires a religious–mystical component to adequately portray the spiritual and ethical potentials of humanity and its challenges. Nontheistic mysticism is a consciousness mechanism aimed at the fine-tuning of the individual’s moral compass, which is affected by the pathologies of normalcy that prevail in all societies. Full article
21 pages, 4578 KiB  
Article
YOLO-Based Model for Automatic Detection of Broiler Pathological Phenomena through Visual and Thermal Images in Intensive Poultry Houses
by Wael M. Elmessery, Joaquín Gutiérrez, Gomaa G. Abd El-Wahhab, Ibrahim A. Elkhaiat, Ibrahim S. El-Soaly, Sadeq K. Alhag, Laila A. Al-Shuraym, Mohamed A. Akela, Farahat S. Moghanm and Mohamed F. Abdelshafie
Agriculture 2023, 13(8), 1527; https://doi.org/10.3390/agriculture13081527 - 31 Jul 2023
Cited by 35 | Viewed by 6910
Abstract
The increasing broiler demand due to overpopulation and meat imports presents challenges in poultry farming, including management, disease control, and chicken observation in varying light conditions. To address these issues, the development of AI-based management processes is crucial, especially considering the need for [...] Read more.
The increasing broiler demand due to overpopulation and meat imports presents challenges in poultry farming, including management, disease control, and chicken observation in varying light conditions. To address these issues, the development of AI-based management processes is crucial, especially considering the need for detecting pathological phenomena in intensive rearing. In this study, a dataset consisting of visual and thermal images was created to capture pathological phenomena in broilers. The dataset contains 10,000 images with 50,000 annotations labeled as lethargic chickens, slipped tendons, diseased eyes, stressed (beaks open), pendulous crop, and healthy broiler. Three versions of the YOLO-based algorithm (v8, v7, and v5) were assessed, utilizing augmented thermal and visual image datasets with various augmentation methods. The aim was to develop thermal- and visual-based models for detecting broilers in complex environments, and secondarily, to classify pathological phenomena under challenging lighting conditions. After training on acknowledged pathological phenomena, the thermal YOLOv8-based model demonstrated exceptional performance, achieving the highest accuracy in object detection (mAP50 of 0.988) and classification (F1 score of 0.972). This outstanding performance makes it a reliable tool for both broiler detection and pathological phenomena classification, attributed to the use of comprehensive datasets during training and development, enabling accurate and efficient detection even in complex environmental conditions. By employing both visual- and thermal-based models for monitoring, farmers can obtain results from both thermal and visual viewpoints, ultimately enhancing the overall reliability of the monitoring process. Full article
(This article belongs to the Section Artificial Intelligence and Digital Agriculture)
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37 pages, 34345 KiB  
Article
Petrographic Microscopy with Ray Tracing and Segmentation from Multi-Angle Polarisation Whole-Slide Images
by Marco Andres Acevedo Zamora and Balz Samuel Kamber
Minerals 2023, 13(2), 156; https://doi.org/10.3390/min13020156 - 20 Jan 2023
Cited by 10 | Viewed by 6794
Abstract
‘Slide scanners’ are rapid optical microscopes equipped with automated and accurate x-y travel stages with virtual z-motion that cannot be rotated. In biomedical microscopic imaging, they are widely deployed to generate whole-slide images (WSI) of tissue samples in various modes of illumination. The [...] Read more.
‘Slide scanners’ are rapid optical microscopes equipped with automated and accurate x-y travel stages with virtual z-motion that cannot be rotated. In biomedical microscopic imaging, they are widely deployed to generate whole-slide images (WSI) of tissue samples in various modes of illumination. The availability of WSI has motivated the development of instrument-agnostic advanced image analysis software, helping drug development, pathology, and many other areas of research. Slide scanners are now being modified to enable polarised petrographic microscopy by simulating stage rotation with the acquisition of multiple rotation angles of the polariser–analyser pair for observing randomly oriented anisotropic materials. Here we report on the calibration strategy of one repurposed slide scanner and describe a pilot image analysis pipeline designed to introduce the wider audience to the complexity of performing computer-assisted feature recognition on mineral groups. The repurposed biological scanner produces transmitted light plane- and cross-polarised (TL-PPL and XPL) and unpolarised reflected light (RL) WSI from polished thin sections or slim epoxy mounts at various magnifications, yielding pixel dimensions from ca. 2.7 × 2.7 to 0.14 × 0.14 µm. A data tree of 14 WSI is regularly obtained, containing two RL and six of each PPL and XPL WSI (at 18° rotation increments). This pyramidal image stack is stitched and built into a local server database simultaneously with acquisition. The pyramids (multi-resolution ‘cubes’) can be viewed with freeware locally deployed for teaching petrography and collaborative research. The main progress reported here concerns image analysis with a pilot open-source software pipeline enabling semantic segmentation on petrographic imagery. For this purpose, all WSI are post-processed and aligned to a ‘fixed’ reflective surface (RL), and the PPL and XPL stacks are then summarised in one image, each with ray tracing that describes visible light reflection, absorption, and O- and E-wave interference phenomena. The maximum red-green-blue values were found to best overcome the limitation of refractive index anisotropy for segmentation based on pixel-neighbouring feature maps. This strongly reduces the variation in dichroism in PPL and interference colour in XPL. The synthetic ray trace WSI is then combined with one RL to estimate modal mineralogy with multi-scale algorithms originally designed for object-based cell segmentation in pathological tissues. This requires generating a small number of polygonal expert annotations that inform a training dataset, enabling on-the-fly machine learning classification into mineral classes. The accuracy of the approach was tested by comparison with modal mineralogy obtained by energy-dispersive spectroscopy scanning electron microscopy (SEM-EDX) for a suite of rocks of simple mineralogy (granulites and peridotite). The strengths and limitations of the pixel-based classification approach are described, and phenomena from sample preparation imperfections to semantic segmentation artefacts around fine-grained minerals and/or of indiscriminate optical properties are discussed. Finally, we provide an outlook on image analysis strategies that will improve the status quo by using the first-pass mineralogy identification from optical WSI to generate a location grid to obtain targeted chemical data (e.g., by SEM-EDX) and by considering the rock texture. Full article
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14 pages, 5899 KiB  
Review
The Discovery of Endoplasmic Reticulum Storage Disease. The Connection between an H&E Slide and the Brain
by Francesco Callea and Valeer Desmet
Int. J. Mol. Sci. 2021, 22(6), 2899; https://doi.org/10.3390/ijms22062899 - 12 Mar 2021
Cited by 8 | Viewed by 4009
Abstract
The revolutionary evolution in science and technology over the last few decades has made it possible to face more adequately three main challenges of modern medicine: changes in old diseases, the appearance of new diseases, and diseases that are unknown (mostly genetic), despite [...] Read more.
The revolutionary evolution in science and technology over the last few decades has made it possible to face more adequately three main challenges of modern medicine: changes in old diseases, the appearance of new diseases, and diseases that are unknown (mostly genetic), despite research efforts. In this paper we review the road travelled by pathologists in search of a method based upon the use of routine instruments and techniques which once were available for research only. The application to tissue studies of techniques from immunology, molecular biology, and genetics has allowed dynamic interpretations of biological phenomena with special regard to gene regulation and expression. That implies stepwise investigations, including light microscopy, immunohistochemistry, in situ hybridization, electron microscopy, molecular histopathology, protein crystallography, and gene sequencing, in order to progress from suggestive features detectable in routinely stained preparations to more characteristic, specific, and finally, pathognomonic features. Hematoxylin and Eosin (H&E)-stained preparations and appropriate immunohistochemical stains have enabled the recognition of phenotypic changes which may reflect genotypic alterations. That has been the case with hepatocytic inclusions detected in H&E-stained preparations, which appeared to correspond to secretory proteins that, due to genetic mutations, were retained within the rough endoplasmic reticulum (RER) and were deficient in plasma. The identification of this phenomenon affecting the molecules alpha-1-antitrypsin and fibrinogen has led to the discovery of a new field of cell organelle pathology, endoplasmic reticulum storage disease(s) (ERSD). Over fifty years, pathologists have wandered through a dark forest of complicated molecules with strange conformations, and by detailed observations in simple histopathological sections, accompanied by a growing background of molecular techniques and revelations, have been able to recognize and identify arrays of grotesque polypeptide arrangements. Full article
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48 pages, 2626 KiB  
Review
Human Pluripotent Stem Cell-Derived Neural Cells as a Relevant Platform for Drug Screening in Alzheimer’s Disease
by Juan Antonio Garcia-Leon, Laura Caceres-Palomo, Elisabeth Sanchez-Mejias, Marina Mejias-Ortega, Cristina Nuñez-Diaz, Juan Jose Fernandez-Valenzuela, Raquel Sanchez-Varo, Jose Carlos Davila, Javier Vitorica and Antonia Gutierrez
Int. J. Mol. Sci. 2020, 21(18), 6867; https://doi.org/10.3390/ijms21186867 - 18 Sep 2020
Cited by 27 | Viewed by 8894
Abstract
Extracellular amyloid-beta deposition and intraneuronal Tau-laden neurofibrillary tangles are prime features of Alzheimer’s disease (AD). The pathology of AD is very complex and still not fully understood, since different neural cell types are involved in the disease. Although neuronal function is clearly deteriorated [...] Read more.
Extracellular amyloid-beta deposition and intraneuronal Tau-laden neurofibrillary tangles are prime features of Alzheimer’s disease (AD). The pathology of AD is very complex and still not fully understood, since different neural cell types are involved in the disease. Although neuronal function is clearly deteriorated in AD patients, recently, an increasing number of evidences have pointed towards glial cell dysfunction as one of the main causative phenomena implicated in AD pathogenesis. The complex disease pathology together with the lack of reliable disease models have precluded the development of effective therapies able to counteract disease progression. The discovery and implementation of human pluripotent stem cell technology represents an important opportunity in this field, as this system allows the generation of patient-derived cells to be used for disease modeling and therapeutic target identification and as a platform to be employed in drug discovery programs. In this review, we discuss the current studies using human pluripotent stem cells focused on AD, providing convincing evidences that this system is an excellent opportunity to advance in the comprehension of AD pathology, which will be translated to the development of the still missing effective therapies. Full article
(This article belongs to the Special Issue hiPSC-Derived Cells as Models for Drug Discovery)
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18 pages, 832 KiB  
Review
Cell Migration and Invasion Assays as Tools for Drug Discovery
by Keren I. Hulkower and Renee L. Herber
Pharmaceutics 2011, 3(1), 107-124; https://doi.org/10.3390/pharmaceutics3010107 - 11 Mar 2011
Cited by 319 | Viewed by 35735
Abstract
Cell migration and invasion are processes that offer rich targets for intervention in key physiologic and pathologic phenomena such as wound healing and cancer metastasis. With the advent of high-throughput and high content imaging systems, there has been a movement towards the use [...] Read more.
Cell migration and invasion are processes that offer rich targets for intervention in key physiologic and pathologic phenomena such as wound healing and cancer metastasis. With the advent of high-throughput and high content imaging systems, there has been a movement towards the use of physiologically relevant cell-based assays earlier in the testing paradigm. This allows more effective identification of lead compounds and recognition of undesirable effects sooner in the drug discovery screening process. This article will review the effective use of several principle formats for studying cell motility: scratch assays, transmembrane assays, microfluidic devices and cell exclusion zone assays. Full article
(This article belongs to the Special Issue Drug Discovery Tools)
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