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Keywords = neutron spin echo spectroscopy

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18 pages, 5761 KB  
Article
Investigation of the Impact of Lipid Acyl Chain Saturation on Fusion Peptide Interactions with Lipid Bilayers
by William T. Heller and Piotr A. Zolnierczuk
Biophysica 2023, 3(1), 121-138; https://doi.org/10.3390/biophysica3010009 - 28 Feb 2023
Cited by 3 | Viewed by 3241
Abstract
The interaction of many peptides with lipid bilayer membranes strongly depends on the lipid composition. Here, a study of the impact of unsaturated lipid acyl chains on the interaction of a derivative of the HIV-1 fusion peptide with lipid bilayer vesicles is presented. [...] Read more.
The interaction of many peptides with lipid bilayer membranes strongly depends on the lipid composition. Here, a study of the impact of unsaturated lipid acyl chains on the interaction of a derivative of the HIV-1 fusion peptide with lipid bilayer vesicles is presented. Lipid bilayer vesicles composed of mixtures of lipids with two saturated acyl chains and lipids and one saturated and one unsaturated acyl chain, but identical head groups, were studied. The dependence of the peptide conformation on the unsaturated lipid content was probed by circular dichroism spectroscopy, while the impact of the peptide on the bilayer structure was determined by small-angle neutron scattering. The impact of the peptide on the lipid bilayer vesicle dynamics was investigated using neutron spin echo spectroscopy. Molecular dynamics simulations were used to characterize the behavior of the systems studied to determine if there were clear differences in their physical properties. The results reveal that the peptide–bilayer interaction is not a simple function of the unsaturated lipid acyl chain content of the bilayer. Instead, the peptide behavior is more consistent with that seen for the bilayer containing only unsaturated lipids, which is supported by lipid-specific interactions revealed by the simulations. Full article
(This article belongs to the Special Issue Molecular Structure and Simulation in Biological System)
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11 pages, 1459 KB  
Article
Determining the Bending Rigidity of Free-Standing Planar Phospholipid Bilayers
by Oscar Zabala-Ferrera, Paige Liu and Peter J. Beltramo
Membranes 2023, 13(2), 129; https://doi.org/10.3390/membranes13020129 - 19 Jan 2023
Cited by 4 | Viewed by 4131
Abstract
We describe a method to determine membrane bending rigidity from capacitance measurements on large area, free-standing, planar, biomembranes. The bending rigidity of lipid membranes is an important biological mechanical property that is commonly optically measured in vesicles, but difficult to quantify in a [...] Read more.
We describe a method to determine membrane bending rigidity from capacitance measurements on large area, free-standing, planar, biomembranes. The bending rigidity of lipid membranes is an important biological mechanical property that is commonly optically measured in vesicles, but difficult to quantify in a planar, unsupported system. To accomplish this, we simultaneously image and apply an electric potential to free-standing, millimeter area, planar lipid bilayers composed of DOPC and DOPG phospholipids to measure the membrane Young’s (elasticity) modulus. The bilayer is then modeled as two adjacent thin elastic films to calculate bending rigidity from the electromechanical response of the membrane to the applied field. Using DOPC, we show that bending rigidities determined by this approach are in good agreement with the existing work using neutron spin echo on vesicles, atomic force spectroscopy on supported lipid bilayers, and micropipette aspiration of giant unilamellar vesicles. We study the effect of asymmetric calcium concentration on symmetric DOPC and DOPG membranes and quantify the resulting changes in bending rigidity. This platform offers the ability to create planar bilayers of controlled lipid composition and aqueous ionic environment, with the ability to asymmetrically alter both. We aim to leverage this high degree of compositional and environmental control, along with the capacity to measure physical properties, in the study of various biological processes in the future. Full article
(This article belongs to the Special Issue Electrical Phenomena in Biological and Biomimetic Membranes)
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12 pages, 698 KB  
Article
Nanoscale Bending Dynamics in Mixed-Chain Lipid Membranes
by Elizabeth G. Kelley, Moritz P. K. Frewein, Orsolya Czakkel and Michihiro Nagao
Symmetry 2023, 15(1), 191; https://doi.org/10.3390/sym15010191 - 9 Jan 2023
Cited by 7 | Viewed by 4153
Abstract
Lipids that have two tails of different lengths are found throughout biomembranes in nature, yet the effects of this asymmetry on the membrane properties are not well understood, especially when it comes to the membrane dynamics. Here we study the nanoscale bending fluctuations [...] Read more.
Lipids that have two tails of different lengths are found throughout biomembranes in nature, yet the effects of this asymmetry on the membrane properties are not well understood, especially when it comes to the membrane dynamics. Here we study the nanoscale bending fluctuations in model mixed-chain 14:0–18:0 PC (MSPC) and 18:0–14:0 PC (SMPC) lipid bilayers using neutron spin echo (NSE) spectroscopy. We find that despite the partial interdigitation that is known to persist in the fluid phase of these membranes, the collective fluctuations are enhanced on timescales of tens of nanoseconds, and the chain-asymmetric lipid bilayers are softer than an analogous chain-symmetric lipid bilayer with the same average number of carbons in the acyl tails, di-16:0 PC (DPPC). Quantitative comparison of the NSE results suggests that the enhanced bending fluctuations at the nanosecond timescales are consistent with experimental and computational studies that showed the compressibility moduli of chain-asymmetric lipid membranes are 20% to 40% lower than chain-symmetric lipid membranes. These studies add to growing evidence that the partial interdigitation in mixed-chain lipid membranes is highly dynamic in the fluid phase and impacts membrane dynamic processes from the molecular to mesoscopic length scales without significantly changing the bilayer thickness or area per lipid. Full article
(This article belongs to the Special Issue Symmetric and Asymmetric Cellular Membranes)
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19 pages, 2620 KB  
Article
Variation of Structural and Dynamical Flexibility of Myelin Basic Protein in Response to Guanidinium Chloride
by Luman Haris, Ralf Biehl, Martin Dulle, Aurel Radulescu, Olaf Holderer, Ingo Hoffmann and Andreas M. Stadler
Int. J. Mol. Sci. 2022, 23(13), 6969; https://doi.org/10.3390/ijms23136969 - 23 Jun 2022
Cited by 5 | Viewed by 2293
Abstract
Myelin basic protein (MBP) is intrinsically disordered in solution and is considered as a conformationally flexible biomacromolecule. Here, we present a study on perturbation of MBP structure and dynamics by the denaturant guanidinium chloride (GndCl) using small-angle scattering and neutron spin–echo spectroscopy (NSE). [...] Read more.
Myelin basic protein (MBP) is intrinsically disordered in solution and is considered as a conformationally flexible biomacromolecule. Here, we present a study on perturbation of MBP structure and dynamics by the denaturant guanidinium chloride (GndCl) using small-angle scattering and neutron spin–echo spectroscopy (NSE). A concentration of 0.2 M GndCl causes charge screening in MBP resulting in a compact, but still disordered protein conformation, while GndCl concentrations above 1 M lead to structural expansion and swelling of MBP. NSE data of MBP were analyzed using the Zimm model with internal friction (ZIF) and normal mode (NM) analysis. A significant contribution of internal friction was found in compact states of MBP that approaches a non-vanishing internal friction relaxation time of approximately 40 ns at high GndCl concentrations. NM analysis demonstrates that the relaxation rates of internal modes of MBP remain unaffected by GndCl, while structural expansion due to GndCl results in increased amplitudes of internal motions. Within the model of the Brownian oscillator our observations can be rationalized by a loss of friction within the protein due to structural expansion. Our study highlights the intimate coupling of structural and dynamical plasticity of MBP, and its fundamental difference to the behavior of ideal polymers in solution. Full article
(This article belongs to the Special Issue Probing Protein Conformational Plasticity)
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17 pages, 8142 KB  
Article
Alkanes as Membrane Regulators of the Response of Early Membranes to Extreme Temperatures
by Loreto Misuraca, Antonino Caliò, Josephine G. LoRicco, Ingo Hoffmann, Roland Winter, Bruno Demé, Judith Peters and Philippe M. Oger
Life 2022, 12(3), 445; https://doi.org/10.3390/life12030445 - 17 Mar 2022
Cited by 7 | Viewed by 4219
Abstract
One of the first steps in the origin of life was the formation of a membrane, a physical boundary that allowed the retention of molecules in concentrated solutions. The proto-membrane was likely formed by self-assembly of simple readily available amphiphiles, such as short-chain [...] Read more.
One of the first steps in the origin of life was the formation of a membrane, a physical boundary that allowed the retention of molecules in concentrated solutions. The proto-membrane was likely formed by self-assembly of simple readily available amphiphiles, such as short-chain fatty acids and alcohols. In the commonly accepted scenario that life originated near hydrothermal systems, how these very simple membrane bilayers could be stable enough in time remains a debated issue. We used various complementary techniques such as dynamic light scattering, small angle neutron scattering, neutron spin-echo spectroscopy, and Fourier-transform infrared spectroscopy to explore the stability of a novel protomembrane system in which the insertion of alkanes in the midplane is proposed to shift membrane stability to higher temperatures, pH, and hydrostatic pressures. We show that, in absence of alkanes, protomembranes transition into lipid droplets when temperature increases; while in presence of alkanes, membranes persist for longer times in a concentration-dependent manner. Proto-membranes containing alkanes are stable at higher temperatures and for longer times, have a higher bending rigidity, and can revert more easily to their initial state upon temperature variations. Hence, the presence of membrane intercalating alkanes could explain how the first membranes could resist the harsh and changing environment of the hydrothermal systems. Furthermore, modulating the quantity of alkanes in the first membranes appears as a possible strategy to adapt the proto-membrane behavior according to temperature fluctuations, and it offers a first glimpse into the evolution of the first membranes. Full article
(This article belongs to the Special Issue Biomolecular Dynamics Explored by Incoherent Neutron Spectroscopy)
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6 pages, 1723 KB  
Article
Measurements of Dynamic Contributions to Coherent Neutron Scattering
by Sebastian Jaksch, Alexandros Koutsioubas, Stefan Mattauch, Olaf Holderer and Henrich Frielinghaus
Colloids Interfaces 2018, 2(3), 31; https://doi.org/10.3390/colloids2030031 - 7 Aug 2018
Cited by 3 | Viewed by 3782
Abstract
In this manuscript, we are investigating the contribution of dynamic membrane properties of phospholipid membranes to coherent scattering signals under grazing incidence. Spectroscopic measurements under grazing incidence can provide useful insight into the properties of biological membranes; however, they are often impeded by [...] Read more.
In this manuscript, we are investigating the contribution of dynamic membrane properties of phospholipid membranes to coherent scattering signals under grazing incidence. Spectroscopic measurements under grazing incidence can provide useful insight into the properties of biological membranes; however, they are often impeded by weak signals. By using grazing-incidence small-angle neutron scattering (GISANS) to identify a dynamic scattering contribution, we are able to independently corroborate the existence of a previously found dynamic mode, now measured by grazing-incidence neutron spin echo spectroscopy (GINSES). Additionally, by increasing the speed of measurement compared to GINSES from several days to hours, we were able to explore the temperature behavior of this mode in phospholipid membranes. These dynamic modes of the membranes show a wavelength of around 700 Å in-plane of the membrane and are most pronounced around 37 C and strongly decrease at lower temperatures below 25 C before vanishing at 20 C. We therefore speculate that they may be linked to biologically relevant functions of the membranes themselves. To our knowledge, this is the first report of an investigation of that membrane mode by means of GISANS. Full article
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21 pages, 7678 KB  
Article
Microscopic Dynamics and Topology of Polymer Rings Immersed in a Host Matrix of Longer Linear Polymers: Results from a Detailed Molecular Dynamics Simulation Study and Comparison with Experimental Data
by George D. Papadopoulos, Dimitrios G. Tsalikis and Vlasis G. Mavrantzas
Polymers 2016, 8(8), 283; https://doi.org/10.3390/polym8080283 - 4 Aug 2016
Cited by 36 | Viewed by 8839
Abstract
We have performed molecular dynamics (MD) simulations of melt systems consisting of a small number of long ring poly(ethylene oxide) (PEO) probes immersed in a host matrix of linear PEO chains and have studied their microscopic dynamics and topology as a function of [...] Read more.
We have performed molecular dynamics (MD) simulations of melt systems consisting of a small number of long ring poly(ethylene oxide) (PEO) probes immersed in a host matrix of linear PEO chains and have studied their microscopic dynamics and topology as a function of the molecular length of the host linear chains. Consistent with a recent neutron spin echo spectroscopy study (Goossen et al., Phys. Rev. Lett. 2015, 115, 148302), we have observed that the segmental dynamics of the probe ring molecules is controlled by the length of the host linear chains. In matrices of short, unentangled linear chains, the ring probes exhibit a Rouse-like dynamics, and the spectra of their dynamic structure factor resemble those in their own melt. In striking contrast, in matrices of long, entangled linear chains, their dynamics is drastically altered. The corresponding dynamic structure factor spectra exhibit a steep initial decay up to times on the order of the entanglement time τe of linear PEO at the same temperature but then they become practically time-independent approaching plateau values. The plateau values are different for different wavevectors; they also depend on the length of the host linear chains. Our results are supported by a geometric analysis of topological interactions, which reveals significant threading of all ring molecules by the linear chains. In most cases, each ring is simultaneously threaded by several linear chains. As a result, its dynamics at times longer than a few τe should be completely dictated by the release of the topological restrictions imposed by these threadings (interpenetrations). Our topological analysis did not indicate any effect of the few ring probes on the statistical properties of the network of primitive paths of the host linear chains. Full article
(This article belongs to the Special Issue Semiflexible Polymers)
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