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Keywords = low-oligosaccharide soybean meal

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18 pages, 1193 KB  
Article
Effects of Different Soybean Protein Sources on Growth Performance, Feed Utilization Efficiency, and Gut Microbiota of Pacific White Shrimp (Litopenaeus vannamei) in Green Water and Clear Water Systems
by Aakriti Khanal, Khanh Q. Nguyen, Cristhian S. Andres, Adela N. Araujo, Trenton L. Corby, Melanie Rhodes, Timothy J. Bruce and D. Allen Davis
Aquac. J. 2026, 6(3), 25; https://doi.org/10.3390/aquacj6030025 - 2 Jul 2026
Viewed by 402
Abstract
Two growth trials were conducted to evaluate the effects of solvent-extracted soybean meal (SBM), low-oligosaccharide soybean meal (LO-SBM), and enzyme-treated soybean meal (ET-SBM) on the growth performance, feed utilization, and gut microbiome of the Pacific white shrimp (Litopenaeus vannamei). Nine diets [...] Read more.
Two growth trials were conducted to evaluate the effects of solvent-extracted soybean meal (SBM), low-oligosaccharide soybean meal (LO-SBM), and enzyme-treated soybean meal (ET-SBM) on the growth performance, feed utilization, and gut microbiome of the Pacific white shrimp (Litopenaeus vannamei). Nine diets were tested, including a basal diet using solvent-extracted soybean meal as the main protein source. The solvent-extracted soybean meal was then replaced with LO-SBM or ET-SBM at 40%, 60%, 80%, and 100% on an isonitrogenous and isolipidic basis. In the 8-week outdoor green water trial, all growth metrics, FCR and apparent net protein retention (ANPR) showed no significant differences among diets (p > 0.05). However, there was a significant effect of LO-SBM on phosphorus retention. In the clear water trial, intermediate inclusion levels of LO-SBM (60–80%) slightly improved growth metrics and phosphorus retention (p < 0.05) without affecting protein utilization, while 100% LO-SBM did not provide additional benefits. Diets with ET-SBM showed similar performance; however, phosphorus retention was reduced. Diets did not affect whole-body composition (p > 0.05), except for phosphorus and moisture. Gut microbiota analysis revealed that shrimp fed 100% ET-SBM had notably higher alpha diversity (Shannon index = 5.45, observed species = 326.41) compared to those fed 100% LO-SBM (Shannon index = 4.59, observed species = 242.69), indicating improved microbial stability with ET-SBM. Nonetheless, there were no significant differences in beta diversity or taxonomic composition between treatments (p > 0.05). This study demonstrates that incorporating 60–80% LO-SBM into the diet improves shrimp growth and nutrient utilization. Additionally, ET-SBM may also support shrimp growth, nutrient efficiency, and microbial diversity, suggesting that both LO-SBM and ET-SBM can be beneficial for shrimp nutrition. Full article
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24 pages, 3529 KB  
Article
Enhancement of Soybean Meal Alters Gut Microbiome and Influences Behavior of Farmed Atlantic Salmon (Salmo salar)
by Alexandra Leeper, Clara Sauphar, Benoit Berlizot, Gabrielle Ladurée, Wolfgang Koppe, Stephen Knobloch, Sigurlaug Skírnisdóttir, Rannveig Björnsdóttir, Margareth Øverland and David Benhaïm
Animals 2023, 13(16), 2591; https://doi.org/10.3390/ani13162591 - 11 Aug 2023
Cited by 12 | Viewed by 3598
Abstract
Atlantic salmon (Salmo salar) is one of the worlds most domesticated fish. As production volumes increase, access to high quality and sustainable protein sources for formulated feeds of this carnivorous fish is required. Soybean meal (SBM) and soy-derived proteins are the [...] Read more.
Atlantic salmon (Salmo salar) is one of the worlds most domesticated fish. As production volumes increase, access to high quality and sustainable protein sources for formulated feeds of this carnivorous fish is required. Soybean meal (SBM) and soy-derived proteins are the dominant protein sources in commercial aquafeeds due to their low-cost, availability and favorable amino acid profile. However, for Atlantic salmon, the inclusion of soybean meal (SBM), and soy protein concentrate (SPC) in certain combinations can impact gut health, which has consequences for immunity and welfare, limiting the use of soy products in salmonid feeds. This study sought to address this challenge by evaluating two gut health-targeted enhancements of SBM for inclusion in freshwater phase salmon diets: enzyme pre-treatment (ETS), and addition of fructose oligosaccharide (USP). These were compared with untreated soybean meal (US) and fish meal (FM). This study took a multi-disciplinary approach, investigating the effect on growth performance, gut microbiome, and behaviors relevant to welfare in aquaculture. This study suggests that both enhancements of SBM provide benefits for growth performance compared with conventional SBM. Both SBM treatments altered fish gut microbiomes and in the case of ETS, increased the presence of the lactic acid bacteria Enterococcus. For the first time, the effects of marine protein sources and plant protein sources on the coping style of salmon were demonstrated. Fish fed SBM showed a tendency for more reactive behavior compared with those fed the FM-based control. All fish had a similar low response to elicited stress, although ETS-fed fish responded more actively than US-fed fish for a single swimming measure. Furthermore, SBM-fed fish displayed lower repeatability of behavior, which may indicate diminished welfare for intensively farmed fish. The implications of these findings for commercial salmonid aquaculture are discussed. Full article
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9 pages, 1145 KB  
Communication
TILLING by Sequencing: A Successful Approach to Identify Rare Alleles in Soybean Populations
by Rima Thapa, Militza Carrero-Colón, Katy M. Rainey and Karen Hudson
Genes 2019, 10(12), 1003; https://doi.org/10.3390/genes10121003 - 3 Dec 2019
Cited by 23 | Viewed by 5665
Abstract
Soybean seeds produce valuable protein that is a major component of livestock feed. However, soybean seeds also contain the anti-nutritional raffinose family oligosaccharides (RFOs) raffinose and stachyose, which are not digestible by non-ruminant animals. This requires the proportion of soybean meal in the [...] Read more.
Soybean seeds produce valuable protein that is a major component of livestock feed. However, soybean seeds also contain the anti-nutritional raffinose family oligosaccharides (RFOs) raffinose and stachyose, which are not digestible by non-ruminant animals. This requires the proportion of soybean meal in the feed to be limited, or risk affecting animal growth rate or overall health. While reducing RFOs in soybean seed has been a goal of soybean breeding, efforts are constrained by low genetic variability for carbohydrate traits and the difficulty in identifying these within the soybean germplasm. We used reverse genetics Targeting Induced Local Lesions in Genomes (TILLING)-by-sequencing approach to identify a damaging polymorphism that results in a missense mutation in a conserved region of the RAFFINOSE SYNTHASE3 gene. We demonstrate that this mutation, when combined as a double mutant with a previously characterized mutation in the RAFFINOSE SYNTHASE2 gene, eliminates nearly 90% of the RFOs in soybean seed as a proportion of the total seeds carbohydrates, and results in increased levels of sucrose. This represents a proof of concept for TILLING by sequencing in soybean. Full article
(This article belongs to the Special Issue TILLING and CRISPR to design the varieties of tomorrow)
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