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Keywords = immune genetic algorithm (IGA)

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20 pages, 8083 KB  
Article
Identification of Colon Immune Cell Marker Genes Using Machine Learning Methods
by Yong Yang, Yuhang Zhang, Jingxin Ren, Kaiyan Feng, Zhandong Li, Tao Huang and Yudong Cai
Life 2023, 13(9), 1876; https://doi.org/10.3390/life13091876 - 7 Sep 2023
Viewed by 2217
Abstract
Immune cell infiltration that occurs at the site of colon tumors influences the course of cancer. Different immune cell compositions in the microenvironment lead to different immune responses and different therapeutic effects. This study analyzed single-cell RNA sequencing data in a normal colon [...] Read more.
Immune cell infiltration that occurs at the site of colon tumors influences the course of cancer. Different immune cell compositions in the microenvironment lead to different immune responses and different therapeutic effects. This study analyzed single-cell RNA sequencing data in a normal colon with the aim of screening genetic markers of 25 candidate immune cell types and revealing quantitative differences between them. The dataset contains 25 classes of immune cells, 41,650 cells in total, and each cell is expressed by 22,164 genes at the expression level. They were fed into a machine learning-based stream. The five feature ranking algorithms (last absolute shrinkage and selection operator, light gradient boosting machine, Monte Carlo feature selection, minimum redundancy maximum relevance, and random forest) were first used to analyze the importance of gene features, yielding five feature lists. Then, incremental feature selection and two classification algorithms (decision tree and random forest) were combined to filter the most important genetic markers from each list. For different immune cell subtypes, their marker genes, such as KLRB1 in CD4 T cells, RPL30 in B cell IGA plasma cells, and JCHAIN in IgG producing B cells, were identified. They were confirmed to be differentially expressed in different immune cells and involved in immune processes. In addition, quantitative rules were summarized by using the decision tree algorithm to distinguish candidate immune cell types. These results provide a reference for exploring the cell composition of the colon cancer microenvironment and for clinical immunotherapy. Full article
(This article belongs to the Section Genetics and Genomics)
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26 pages, 16136 KB  
Article
Immune Optimization of Double-Sided Welding Sequence for Medium-Small Assemblies in Ships Based on Inherent Strain Method
by Yi Shen, Suodong Liu, Mingxin Yuan, Xianling Dai and Jinchun Lan
Metals 2022, 12(7), 1091; https://doi.org/10.3390/met12071091 - 26 Jun 2022
Cited by 3 | Viewed by 2225
Abstract
The double-sided welding process is widely used in ship construction due to its high welding efficiency and forming quality. In order to further reduce the deformation caused by double-sided welding for medium-small assemblies in ships, the optimization of the double-sided welding sequence based [...] Read more.
The double-sided welding process is widely used in ship construction due to its high welding efficiency and forming quality. In order to further reduce the deformation caused by double-sided welding for medium-small assemblies in ships, the optimization of the double-sided welding sequence based on an artificial immune algorithm is carried out. First, the formation mechanism of welding deformation under the double-sided welding process is analyzed by the inherent strain method; next, the reduction of the welding deformation is taken as the optimization goal, and the welding sequence optimization model for double-sided welding is constructed; then, an immune clonal optimization algorithm based on similar antibody similarity screening and steady-state adjustment is introduced, and the immune optimization process for double-sided welding sequence is designed; finally, double-sided welding sequence optimization tests are carried out for four different types of medium-small assemblies in ships. Numerical test results show that, compared with IGA (Immune genetic algorithm), ICA (Immune clonal algorithm), and GA (Genetic algorithm), the maximum welding deformation caused by the welding sequence optimized by the proposed immune clonal algorithm is reduced by 2.4%, 2.8, and 3.3%, respectively, the average maximum welding deformation is reduced by 2.6%, 2.5, and 3.4%, respectively, and the convergence generation is reduced by 16.2%, 13.4, and 11.2%, respectively, which verifies the strong optimization ability and high optimization efficiency of the immune clonal algorithm introduced in the double-sided welding sequence optimization. Full article
(This article belongs to the Topic Development of Friction Stir Welding and Processing)
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18 pages, 3684 KB  
Article
Solution to Solid Wood Board Cutting Stock Problem
by Min Tang, Ying Liu, Fenglong Ding and Zhengguang Wang
Appl. Sci. 2021, 11(17), 7790; https://doi.org/10.3390/app11177790 - 24 Aug 2021
Cited by 13 | Viewed by 4377
Abstract
In the production process for wooden furniture, the raw material costs account for more than 50% of furniture costs, and the utilization rate of raw materials depends mainly on the layout scheme. Therefore, a reasonable layout is an important measure to reduce furniture [...] Read more.
In the production process for wooden furniture, the raw material costs account for more than 50% of furniture costs, and the utilization rate of raw materials depends mainly on the layout scheme. Therefore, a reasonable layout is an important measure to reduce furniture costs. This paper investigates the solid wood board cutting stock problem (CSP) and establishes an optimization model, with the goal of the highest possible utilization rate for original boards. An ant colony-immune genetic algorithm (AC-IGA) is designed to solve this model. The solutions of the ant colony algorithm are used as the initial population of the immune genetic algorithm, and the optimal solution is obtained using the immune genetic algorithm after multiple iterations are transformed into the accumulation of global pheromones, which improves the search ability and ensures the solution quality. The layout process of the solid wood board is abstracted into the construction process of the solution. At the same time, in order to prevent premature convergence, several improved methods, such as a global pheromone hybrid update and adaptive crossover probability, are proposed. Comparative experiments are designed to verify the feasibility and effectiveness of the AC-IGA, and the experimental results show that the AC-IGA has better solution precision and global search ability compared with the ant colony algorithm (ACA), genetic algorithm (GA), grey wolf optimizer (GWO), and polar bear optimization (PBO). The utilization rate increased by more than 2.308%, which provides effective theoretical and methodological support for furniture enterprises to improve economic benefits. Full article
(This article belongs to the Topic Machine and Deep Learning)
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32 pages, 3814 KB  
Article
Using Cuckoo Search Algorithm with Q-Learning and Genetic Operation to Solve the Problem of Logistics Distribution Center Location
by Juan Li, Dan-dan Xiao, Hong Lei, Ting Zhang and Tian Tian
Mathematics 2020, 8(2), 149; https://doi.org/10.3390/math8020149 - 21 Jan 2020
Cited by 37 | Viewed by 6640
Abstract
Cuckoo search (CS) algorithm is a novel swarm intelligence optimization algorithm, which is successfully applied to solve some optimization problems. However, it has some disadvantages, as it is easily trapped in local optimal solutions. Therefore, in this work, a new CS extension with [...] Read more.
Cuckoo search (CS) algorithm is a novel swarm intelligence optimization algorithm, which is successfully applied to solve some optimization problems. However, it has some disadvantages, as it is easily trapped in local optimal solutions. Therefore, in this work, a new CS extension with Q-Learning step size and genetic operator, namely dynamic step size cuckoo search algorithm (DMQL-CS), is proposed. Step size control strategy is considered as action in DMQL-CS algorithm, which is used to examine the individual multi-step evolution effect and learn the individual optimal step size by calculating the Q function value. Furthermore, genetic operators are added to DMQL-CS algorithm. Crossover and mutation operations expand search area of the population and improve the diversity of the population. Comparing with various CS algorithms and variants of differential evolution (DE), the results demonstrate that the DMQL-CS algorithm is a competitive swarm algorithm. In addition, the DMQL-CS algorithm was applied to solve the problem of logistics distribution center location. The effectiveness of the proposed method was verified by comparing with cuckoo search (CS), improved cuckoo search algorithm (ICS), modified chaos-enhanced cuckoo search algorithm (CCS), and immune genetic algorithm (IGA) for both 6 and 10 distribution centers. Full article
(This article belongs to the Special Issue Evolutionary Computation 2020)
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25 pages, 5546 KB  
Article
Nonlinear Predictive Control for a Boiler–Turbine Unit Based on a Local Model Network and Immune Genetic Algorithm
by Hongxia Zhu, Gang Zhao, Li Sun and Kwang Y. Lee
Sustainability 2019, 11(18), 5102; https://doi.org/10.3390/su11185102 - 18 Sep 2019
Cited by 15 | Viewed by 3363
Abstract
This paper proposes a nonlinear model predictive control (NMPC) strategy based on a local model network (LMN) and a heuristic optimization method to solve the control problem for a nonlinear boiler–turbine unit. First, the LMN model of the boiler–turbine unit is identified by [...] Read more.
This paper proposes a nonlinear model predictive control (NMPC) strategy based on a local model network (LMN) and a heuristic optimization method to solve the control problem for a nonlinear boiler–turbine unit. First, the LMN model of the boiler–turbine unit is identified by using a data-driven modeling method and converted into a time-varying global predictor. Then, the nonlinear constrained optimization problem for the predictive control is solved online by a specially designed immune genetic algorithm (IGA), which calculates the optimal control law at each sampling instant. By introducing an adaptive terminal cost in the objective function and utilizing local fictitious controllers to improve the initial population of IGA, the proposed NMPC can guarantee the system stability while the computational complexity is reduced since a shorter prediction horizon can be adopted. The effectiveness of the proposed NMPC is validated by simulations on a 500 MW coal-fired boiler–turbine unit. Full article
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17 pages, 4312 KB  
Article
Reducing Building Conflicts in Map Generalization with an Improved PSO Algorithm
by Hesheng Huang, Qingsheng Guo, Yageng Sun and Yuangang Liu
ISPRS Int. J. Geo-Inf. 2017, 6(5), 127; https://doi.org/10.3390/ijgi6050127 - 26 Apr 2017
Cited by 17 | Viewed by 5208
Abstract
In map generalization, road symbolization and map scale reduction may create spatial conflicts between roads and neighboring buildings. To resolve these conflicts, cartographers often displace the buildings. However, because such displacement sometimes produces secondary spatial conflicts, it is necessary to solve the spatial [...] Read more.
In map generalization, road symbolization and map scale reduction may create spatial conflicts between roads and neighboring buildings. To resolve these conflicts, cartographers often displace the buildings. However, because such displacement sometimes produces secondary spatial conflicts, it is necessary to solve the spatial conflicts iteratively. In this paper, we apply the immune genetic algorithm (IGA) and improved particle swarm optimization (PSO) to building displacement to solve conflicts. The dual-inheritance framework from the cultural algorithm is adopted in the PSO algorithm to optimize the topologic structure of particles. We generate Pareto optimal displacement solutions using the niche Pareto competition mechanism. The results of experiments comparing IGA and the improved PSO show that the improved PSO outperforms IGA; the improved PSO results in fewer graphic conflicts and smaller movements that better satisfy the movement precision requirements. Full article
(This article belongs to the Special Issue Intelligent Spatial Decision Support)
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