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Keywords = ensemble deep learning (EDL)

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34 pages, 9065 KB  
Article
Attention-Enabled Ensemble Deep Learning Models and Their Validation for Depression Detection: A Domain Adoption Paradigm
by Jaskaran Singh, Narpinder Singh, Mostafa M. Fouda, Luca Saba and Jasjit S. Suri
Diagnostics 2023, 13(12), 2092; https://doi.org/10.3390/diagnostics13122092 - 16 Jun 2023
Cited by 22 | Viewed by 3416
Abstract
Depression is increasingly prevalent, leading to higher suicide risk. Depression detection and sentimental analysis of text inputs in cross-domain frameworks are challenging. Solo deep learning (SDL) and ensemble deep learning (EDL) models are not robust enough. Recently, attention mechanisms have been introduced in [...] Read more.
Depression is increasingly prevalent, leading to higher suicide risk. Depression detection and sentimental analysis of text inputs in cross-domain frameworks are challenging. Solo deep learning (SDL) and ensemble deep learning (EDL) models are not robust enough. Recently, attention mechanisms have been introduced in SDL. We hypothesize that attention-enabled EDL (aeEDL) architectures are superior compared to attention-not-enabled SDL (aneSDL) or aeSDL models. We designed EDL-based architectures with attention blocks to build eleven kinds of SDL model and five kinds of EDL model on four domain-specific datasets. We scientifically validated our models by comparing “seen” and “unseen” paradigms (SUP). We benchmarked our results against the SemEval (2016) sentimental dataset and established reliability tests. The mean increase in accuracy for EDL over their corresponding SDL components was 4.49%. Regarding the effect of attention block, the increase in the mean accuracy (AUC) of aeSDL over aneSDL was 2.58% (1.73%), and the increase in the mean accuracy (AUC) of aeEDL over aneEDL was 2.76% (2.80%). When comparing EDL vs. SDL for non-attention and attention, the mean aneEDL was greater than aneSDL by 4.82% (3.71%), and the mean aeEDL was greater than aeSDL by 5.06% (4.81%). For the benchmarking dataset (SemEval), the best-performing aeEDL model (ALBERT+BERT-BiLSTM) was superior to the best aeSDL (BERT-BiLSTM) model by 3.86%. Our scientific validation and robust design showed a difference of only 2.7% in SUP, thereby meeting the regulatory constraints. We validated all our hypotheses and further demonstrated that aeEDL is a very effective and generalized method for detecting symptoms of depression in cross-domain settings. Full article
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49 pages, 34748 KB  
Article
Ensemble Deep Learning Derived from Transfer Learning for Classification of COVID-19 Patients on Hybrid Deep-Learning-Based Lung Segmentation: A Data Augmentation and Balancing Framework
by Arun Kumar Dubey, Gian Luca Chabert, Alessandro Carriero, Alessio Pasche, Pietro S. C. Danna, Sushant Agarwal, Lopamudra Mohanty, Nillmani, Neeraj Sharma, Sarita Yadav, Achin Jain, Ashish Kumar, Mannudeep K. Kalra, David W. Sobel, John R. Laird, Inder M. Singh, Narpinder Singh, George Tsoulfas, Mostafa M. Fouda, Azra Alizad, George D. Kitas, Narendra N. Khanna, Klaudija Viskovic, Melita Kukuljan, Mustafa Al-Maini, Ayman El-Baz, Luca Saba and Jasjit S. Suriadd Show full author list remove Hide full author list
Diagnostics 2023, 13(11), 1954; https://doi.org/10.3390/diagnostics13111954 - 2 Jun 2023
Cited by 34 | Viewed by 5234
Abstract
Background and motivation: Lung computed tomography (CT) techniques are high-resolution and are well adopted in the intensive care unit (ICU) for COVID-19 disease control classification. Most artificial intelligence (AI) systems do not undergo generalization and are typically overfitted. Such trained AI systems are [...] Read more.
Background and motivation: Lung computed tomography (CT) techniques are high-resolution and are well adopted in the intensive care unit (ICU) for COVID-19 disease control classification. Most artificial intelligence (AI) systems do not undergo generalization and are typically overfitted. Such trained AI systems are not practical for clinical settings and therefore do not give accurate results when executed on unseen data sets. We hypothesize that ensemble deep learning (EDL) is superior to deep transfer learning (TL) in both non-augmented and augmented frameworks. Methodology: The system consists of a cascade of quality control, ResNet–UNet-based hybrid deep learning for lung segmentation, and seven models using TL-based classification followed by five types of EDL’s. To prove our hypothesis, five different kinds of data combinations (DC) were designed using a combination of two multicenter cohorts—Croatia (80 COVID) and Italy (72 COVID and 30 controls)—leading to 12,000 CT slices. As part of generalization, the system was tested on unseen data and statistically tested for reliability/stability. Results: Using the K5 (80:20) cross-validation protocol on the balanced and augmented dataset, the five DC datasets improved TL mean accuracy by 3.32%, 6.56%, 12.96%, 47.1%, and 2.78%, respectively. The five EDL systems showed improvements in accuracy of 2.12%, 5.78%, 6.72%, 32.05%, and 2.40%, thus validating our hypothesis. All statistical tests proved positive for reliability and stability. Conclusion: EDL showed superior performance to TL systems for both (a) unbalanced and unaugmented and (b) balanced and augmented datasets for both (i) seen and (ii) unseen paradigms, validating both our hypotheses. Full article
(This article belongs to the Special Issue Diagnostic AI and Viral or Bacterial Infection)
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21 pages, 3260 KB  
Article
An IoT-Fog-Cloud Integrated Framework for Real-Time Remote Cardiovascular Disease Diagnosis
by Abhilash Pati, Manoranjan Parhi, Mohammad Alnabhan, Binod Kumar Pattanayak, Ahmad Khader Habboush and Mohammad K. Al Nawayseh
Informatics 2023, 10(1), 21; https://doi.org/10.3390/informatics10010021 - 6 Feb 2023
Cited by 37 | Viewed by 4720
Abstract
Recently, it has proven difficult to make an immediate remote diagnosis of any coronary illness, including heart disease, diabetes, etc. The drawbacks of cloud computing infrastructures, such as excessive latency, bandwidth, energy consumption, security, and privacy concerns, have lately been addressed by Fog [...] Read more.
Recently, it has proven difficult to make an immediate remote diagnosis of any coronary illness, including heart disease, diabetes, etc. The drawbacks of cloud computing infrastructures, such as excessive latency, bandwidth, energy consumption, security, and privacy concerns, have lately been addressed by Fog computing with IoT applications. In this study, an IoT-Fog-Cloud integrated system, called a Fog-empowered framework for real-time analysis in heart patients using ENsemble Deep learning (FRIEND), has been introduced that can instantaneously facilitate remote diagnosis of heart patients. The proposed system was trained on the combined dataset of Long-Beach, Cleveland, Switzerland, and Hungarian heart disease datasets. We first tested the model with eight basic ML approaches, including the decision tree, logistic regression, random forest, naive Bayes, k-nearest neighbors, support vector machine, AdaBoost, and XGBoost approaches, and then applied ensemble methods including bagging classifiers, weighted averaging, and soft and hard voting to achieve enhanced outcomes and a deep neural network, a deep learning approach, with the ensemble methods. These models were validated using 16 performance and 9 network parameters to justify this work. The accuracy, PPV, TPR, TNR, and F1 scores of the experiments reached 94.27%, 97.59%, 96.09%, 75.44%, and 96.83%, respectively, which were comparatively higher when the deep neural network was assembled with bagging and hard-voting classifiers. The user-friendliness and the inclusion of Fog computing principles, instantaneous remote cardiac patient diagnosis, low latency, and low energy consumption, etc., are advantages confirmed according to the achieved experimental results. Full article
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10 pages, 3729 KB  
Communication
Off-Axis Holographic Interferometer with Ensemble Deep Learning for Biological Tissues Identification
by Hoson Lam, Yanmin Zhu and Prathan Buranasiri
Appl. Sci. 2022, 12(24), 12674; https://doi.org/10.3390/app122412674 - 10 Dec 2022
Cited by 2 | Viewed by 2005
Abstract
This paper proposes a method with an off-axis interferometer and an ensemble deep learning (I-EDL) hologram-classifier to interpret noisy digital holograms captured from the tissues of flawed biological specimens. The holograms are captured by an interferometer, which serves as a digital holographic scanner [...] Read more.
This paper proposes a method with an off-axis interferometer and an ensemble deep learning (I-EDL) hologram-classifier to interpret noisy digital holograms captured from the tissues of flawed biological specimens. The holograms are captured by an interferometer, which serves as a digital holographic scanner to scan the tissue with 3D information. The method achieves a high success rate of 99.60% in identifying the specimens through the tissue holograms. It is found that the ensemble deep learning hologram-classifier can effectively adapt to optical aberration coming from dust on mirrors and optical lens aberrations such as the Airy-plaque-like rings out-turn from the lenses in the interferometer. The deep learning network effectively adapts to these irregularities during the training stage and performs well in the later recognition stage without prior optical background compensations. The method does not require an intact sample with a full outline shape of the specimens or the organs to understand the objects’ identities. It demonstrates a new paradigm in object identification by ensemble deep learning through a direct wavefront recognition technique. Full article
(This article belongs to the Section Optics and Lasers)
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30 pages, 6183 KB  
Article
Embedded AMIS-Deep Learning with Dialog-Based Object Query System for Multi-Class Tuberculosis Drug Response Classification
by Chutinun Prasitpuriprecha, Rapeepan Pitakaso, Sarayut Gonwirat, Prem Enkvetchakul, Thanawadee Preeprem, Sirima Suvarnakuta Jantama, Chutchai Kaewta, Nantawatana Weerayuth, Thanatkij Srichok, Surajet Khonjun and Natthapong Nanthasamroeng
Diagnostics 2022, 12(12), 2980; https://doi.org/10.3390/diagnostics12122980 - 28 Nov 2022
Cited by 10 | Viewed by 3603
Abstract
A person infected with drug-resistant tuberculosis (DR-TB) is the one who does not respond to typical TB treatment. DR-TB necessitates a longer treatment period and a more difficult treatment protocol. In addition, it can spread and infect individuals in the same manner as [...] Read more.
A person infected with drug-resistant tuberculosis (DR-TB) is the one who does not respond to typical TB treatment. DR-TB necessitates a longer treatment period and a more difficult treatment protocol. In addition, it can spread and infect individuals in the same manner as regular TB, despite the fact that early detection of DR-TB could reduce the cost and length of TB treatment. This study provided a fast and effective classification scheme for the four subtypes of TB: Drug-sensitive tuberculosis (DS-TB), drug-resistant tuberculosis (DR-TB), multidrug-resistant tuberculosis (MDR-TB), and extensively drug-resistant tuberculosis (XDR-TB). The drug response classification system (DRCS) has been developed as a classification tool for DR-TB subtypes. As a classification method, ensemble deep learning (EDL) with two types of image preprocessing methods, four convolutional neural network (CNN) architectures, and three decision fusion methods have been created. Later, the model developed by EDL will be included in the dialog-based object query system (DBOQS), in order to enable the use of DRCS as the classification tool for DR-TB in assisting medical professionals with diagnosing DR-TB. EDL yields an improvement of 1.17–43.43% over the existing methods for classifying DR-TB, while compared with classic deep learning, it generates 31.25% more accuracy. DRCS was able to increase accuracy to 95.8% and user trust to 95.1%, and after the trial period, 99.70% of users were interested in continuing the utilization of the system as a supportive diagnostic tool. Full article
(This article belongs to the Special Issue Artificial Intelligence in Clinical Medical Imaging Analysis)
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19 pages, 3881 KB  
Article
PD-BertEDL: An Ensemble Deep Learning Method Using BERT and Multivariate Representation to Predict Peptide Detectability
by Huiqing Wang, Juan Wang, Zhipeng Feng, Ying Li and Hong Zhao
Int. J. Mol. Sci. 2022, 23(20), 12385; https://doi.org/10.3390/ijms232012385 - 16 Oct 2022
Cited by 3 | Viewed by 2340
Abstract
Peptide detectability is defined as the probability of identifying a peptide from a mixture of standard samples, which is a key step in protein identification and analysis. Exploring effective methods for predicting peptide detectability is helpful for disease treatment and clinical research. However, [...] Read more.
Peptide detectability is defined as the probability of identifying a peptide from a mixture of standard samples, which is a key step in protein identification and analysis. Exploring effective methods for predicting peptide detectability is helpful for disease treatment and clinical research. However, most existing computational methods for predicting peptide detectability rely on a single information. With the increasing complexity of feature representation, it is necessary to explore the influence of multivariate information on peptide detectability. Thus, we propose an ensemble deep learning method, PD-BertEDL. Bidirectional encoder representations from transformers (BERT) is introduced to capture the context information of peptides. Context information, sequence information, and physicochemical information of peptides were combined to construct the multivariate feature space of peptides. We use different deep learning methods to capture the high-quality features of different categories of peptides information and use the average fusion strategy to integrate three model prediction results to solve the heterogeneity problem and to enhance the robustness and adaptability of the model. The experimental results show that PD-BertEDL is superior to the existing prediction methods, which can effectively predict peptide detectability and provide strong support for protein identification and quantitative analysis, as well as disease treatment. Full article
(This article belongs to the Collection Computational Studies of Biomolecules)
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