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Keywords = electrons prebiotic molecules

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14 pages, 4358 KB  
Article
Plasma Treatment as a Sustainable Method for Enhancing the Wettability of Jute Fabrics
by Aleksandra Ivanovska, Marija Milošević, Bratislav Obradović, Zorica Svirčev and Mirjana Kostić
Sustainability 2023, 15(3), 2125; https://doi.org/10.3390/su15032125 - 23 Jan 2023
Cited by 26 | Viewed by 4743
Abstract
In this paper, raw jute fabric was subjected to atmospheric pressure dielectric barrier discharge (at 150 or 300 Hz) to enhance its wettability, i.e., capillarity and wetting time. Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) spectroscopy and Field Emission Scanning Electron Microscopy (FE-SEM) were [...] Read more.
In this paper, raw jute fabric was subjected to atmospheric pressure dielectric barrier discharge (at 150 or 300 Hz) to enhance its wettability, i.e., capillarity and wetting time. Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) spectroscopy and Field Emission Scanning Electron Microscopy (FE-SEM) were used to assess the changes in the fabrics’ surface chemistry and morphology induced by plasma treatments. The obtained results revealed that both plasma treatments enhanced the wettability of jute fabrics, which could be ascribed to the changes in the fibers’ surface chemistry (the removal of non-cellulosic components, exposure of the cellulose molecules, and oxidation) and morphology (increased roughness due to etching of the surface layers and partial fibrillation). Capillary rise heights increased by approximately 1.8 and 1.9 times, and wetting times were 35 and 34 times shorter 24 h after the plasma treatment at 150 and 300 Hz, respectively. Special attention was given to the aging effect of plasma treatment indicated no significant changes in the fabrics’ capillarity and wetting time after 28 and 7 days, respectively, proving the durability of the effects of plasma treatment. Plasma-treated raw jute fabrics could be used as water-binding geo-prebiotic polysaccharide supports to provide the necessary water for the initial growth of cyanobacterial biocrusts. The lack of moisture is the main constraint in biocrust development after cyanobacterial inoculation. The combination of such water-supportive fabrics and cyanobacterial strains could be used for the rehabilitation of various degraded lands, sediments, and substrates, as well as for air and water pollution control. Full article
(This article belongs to the Special Issue Performance Enhancement and Sustainable Application of Cellulose)
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18 pages, 1197 KB  
Article
Hydrolysis, Microstructural Profiling and Utilization of Cyamopsis tetragonoloba in Yoghurt
by Majid Hussain, Saeed Akhtar, Nazia Khalid, Muhammad Azam, Muhammad Waheed Iqbal, Tariq Ismail, Imran Mahmood Khan, Noman Walayat, Taha Mehany, Tuba Esatbeyoglu and Sameh A. Korma
Fermentation 2023, 9(1), 45; https://doi.org/10.3390/fermentation9010045 - 4 Jan 2023
Cited by 9 | Viewed by 3791
Abstract
The present study investigates the hydrolysis, microstructural profiling and utilization of guar gum (Cyamopsis tetragonoloba) as a prebiotic in a yoghurt. Guar galactomannans (GG) was purified and partially depolymerized using an acid, alkali and enzyme to improve its characteristics and increase [...] Read more.
The present study investigates the hydrolysis, microstructural profiling and utilization of guar gum (Cyamopsis tetragonoloba) as a prebiotic in a yoghurt. Guar galactomannans (GG) was purified and partially depolymerized using an acid, alkali and enzyme to improve its characteristics and increase its utilization. The prebiotic potential of hydrolyzed guar gum was determined using Basel and supplemented media. Crude guar galactomannans (CGG), purified guar galactomannans (PGG), base hydrolyzed guar galactomannans (BHGG), acid hydrolyzed guar galactomannans (AHGG) and enzymatic hydrolyzed guar galactomannans (EHGG) were analyzed using scanning electron microscope (SEM), X-ray diffraction (XRD) and Fourier transform infrared spectroscopy (FTIR). Yoghurt was prepared with a starter culture and incorporating guar gum, its hydrolyzed forms (0.1, 0.5 and 1%) and Bifidobacterium bifidum. The results showed that PHGG significantly improved the viability of B. bifidum. SEM revealed a significant change in the surface morphology of guar gum after acidic and enzymatic hydrolysis. Enzymatic hydrolysis developed a well-defined framework within guar gum molecules. The XRD pattern of CGG, PGG and AHGG presented an amorphous structure and showed low overall crystallinity while EHGG and BHGG resulted in slightly increased crystallinity regions. FTIR spectral analysis suggested that, after hydrolysis, there was no major transformation of functional groups. The addition of the probiotic and prebiotic significantly improved the physiochemical properties of the developed yoghurt. The firmness, cohesiveness, adhesiveness and syneresis were increased while consistency and viscosity were decreased during storage. In sum, a partial hydrolysis of guar gum could be achieved using inexpensive methods with commercial significance. Full article
(This article belongs to the Special Issue Trends in the Development and Use of Fermented Dairy Products)
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12 pages, 29961 KB  
Article
New Signatures of Bio-Molecular Complexity in the Hypervelocity Impact Ejecta of Icy Moon Analogues
by Surendra V. Singh, Haritha Dilip, Jaya K. Meka, Vijay Thiruvenkatam, Vishakantaiah Jayaram, Mariyappan Muruganantham, Vijayan Sivaprahasam, Balabhadrapatruni N. Rajasekhar, Anil Bhardwaj, Nigel J. Mason, Mark J. Burchell and Bhalamurugan Sivaraman
Life 2022, 12(4), 508; https://doi.org/10.3390/life12040508 - 30 Mar 2022
Cited by 6 | Viewed by 3701
Abstract
Impact delivery of prebiotic compounds to the early Earth from an impacting comet is considered to be one of the possible ways by which prebiotic molecules arrived on the Earth. Given the ubiquity of impact features observed on all planetary bodies, bolide impacts [...] Read more.
Impact delivery of prebiotic compounds to the early Earth from an impacting comet is considered to be one of the possible ways by which prebiotic molecules arrived on the Earth. Given the ubiquity of impact features observed on all planetary bodies, bolide impacts may be a common source of organics on other planetary bodies both in our own and other solar systems. Biomolecules such as amino acids have been detected on comets and are known to be synthesized due to impact-induced shock processing. Here we report the results of a set of hypervelocity impact experiments where we shocked icy mixtures of amino acids mimicking the icy surface of planetary bodies with high-speed projectiles using a two-stage light gas gun and analyzed the ejecta material after impact. Electron microscopic observations of the ejecta have shown the presence of macroscale structures with long polypeptide chains revealed from LCMS analysis. These results suggest a pathway in which impact on cometary ices containing building blocks of life can lead to the synthesis of material architectures that could have played a role in the emergence of life on the Earth and which may be applied to other planetary bodies as well. Full article
(This article belongs to the Special Issue Frontiers of Astrobiology, Volume II)
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14 pages, 667 KB  
Article
Ab Initio Study of Fine and Hyperfine Interactions in Triplet POH
by Luca Bizzocchi, Silvia Alessandrini, Mattia Melosso, Víctor M. Rivilla and Cristina Puzzarini
Molecules 2022, 27(1), 302; https://doi.org/10.3390/molecules27010302 - 4 Jan 2022
Cited by 2 | Viewed by 3072
Abstract
Phosphorous-containing molecules have a great relevance in prebiotic chemistry in view of the fact that phosphorous is a fundamental constituent of biomolecules, such as RNA, DNA, and ATP. Its biogenic importance has led astrochemists to investigate the possibility that P-bearing species could have [...] Read more.
Phosphorous-containing molecules have a great relevance in prebiotic chemistry in view of the fact that phosphorous is a fundamental constituent of biomolecules, such as RNA, DNA, and ATP. Its biogenic importance has led astrochemists to investigate the possibility that P-bearing species could have formed in the interstellar medium (ISM) and subsequently been delivered to early Earth by rocky bodies. However, only two P-bearing molecules have been detected so far in the ISM, with the chemistry of interstellar phosphorous remaining poorly understood. Here, in order to shed further light on P-carriers in space, we report a theoretical spectroscopic characterisation of the rotational spectrum of POH in its 3A ground electronic state. State-of-the-art coupled-cluster schemes have been employed to derive rotational constants, centrifugal distortion terms, and most of the fine and hyperfine interaction parameters, while the electron spin–spin dipolar coupling has been investigated using the multi-configuration self-consistent-field method. The computed spectroscopic parameters have been used to simulate the appearance of triplet POH rotational and ro-vibrational spectra in different conditions, from cold to warm environments, either in gas-phase experiments or in molecular clouds. Finally, we point out that the predicted hyperfine structures represent a key pattern for the recognition of POH in laboratory and interstellar spectra. Full article
(This article belongs to the Special Issue Reactivity and Properties of Radicals and Radical Ions)
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17 pages, 2034 KB  
Review
Plasma Modeling and Prebiotic Chemistry: A Review of the State-of-the-Art and Perspectives
by Gaia Micca Longo, Luca Vialetto, Paola Diomede, Savino Longo and Vincenzo Laporta
Molecules 2021, 26(12), 3663; https://doi.org/10.3390/molecules26123663 - 16 Jun 2021
Cited by 13 | Viewed by 5519
Abstract
We review the recent progress in the modeling of plasmas or ionized gases, with compositions compatible with that of primordial atmospheres. The plasma kinetics involves elementary processes by which free electrons ultimately activate weakly reactive molecules, such as carbon dioxide or methane, thereby [...] Read more.
We review the recent progress in the modeling of plasmas or ionized gases, with compositions compatible with that of primordial atmospheres. The plasma kinetics involves elementary processes by which free electrons ultimately activate weakly reactive molecules, such as carbon dioxide or methane, thereby potentially starting prebiotic reaction chains. These processes include electron–molecule reactions and energy exchanges between molecules. They are basic processes, for example, in the famous Miller-Urey experiment, and become relevant in any prebiotic scenario where the primordial atmosphere is significantly ionized by electrical activity, photoionization or meteor phenomena. The kinetics of plasma displays remarkable complexity due to the non-equilibrium features of the energy distributions involved. In particular, we argue that two concepts developed by the plasma modeling community, the electron velocity distribution function and the vibrational distribution function, may unlock much new information and provide insight into prebiotic processes initiated by electron–molecule collisions. Full article
(This article belongs to the Special Issue Feature Review Papers in Physical Chemistry)
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26 pages, 3564 KB  
Review
Chemical Diversity of Metal Sulfide Minerals and Its Implications for the Origin of Life
by Yamei Li, Norio Kitadai and Ryuhei Nakamura
Life 2018, 8(4), 46; https://doi.org/10.3390/life8040046 - 10 Oct 2018
Cited by 49 | Viewed by 14162
Abstract
Prebiotic organic synthesis catalyzed by Earth-abundant metal sulfides is a key process for understanding the evolution of biochemistry from inorganic molecules, yet the catalytic functions of sulfides have remained poorly explored in the context of the origin of life. Past studies on prebiotic [...] Read more.
Prebiotic organic synthesis catalyzed by Earth-abundant metal sulfides is a key process for understanding the evolution of biochemistry from inorganic molecules, yet the catalytic functions of sulfides have remained poorly explored in the context of the origin of life. Past studies on prebiotic chemistry have mostly focused on a few types of metal sulfide catalysts, such as FeS or NiS, which form limited types of products with inferior activity and selectivity. To explore the potential of metal sulfides on catalyzing prebiotic chemical reactions, here, the chemical diversity (variations in chemical composition and phase structure) of 304 natural metal sulfide minerals in a mineralogy database was surveyed. Approaches to rationally predict the catalytic functions of metal sulfides are discussed based on advanced theories and analytical tools of electrocatalysis such as proton-coupled electron transfer, structural comparisons between enzymes and minerals, and in situ spectroscopy. To this end, we introduce a model of geoelectrochemistry driven prebiotic synthesis for chemical evolution, as it helps us to predict kinetics and selectivity of targeted prebiotic chemistry under “chemically messy conditions”. We expect that combining the data-mining of mineral databases with experimental methods, theories, and machine-learning approaches developed in the field of electrocatalysis will facilitate the prediction and verification of catalytic performance under a wide range of pH and Eh conditions, and will aid in the rational screening of mineral catalysts involved in the origin of life. Full article
(This article belongs to the Special Issue Minerals and Origins of Life)
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11 pages, 2196 KB  
Communication
Excited-State Dynamics of Melamine and Its Lysine Derivative Investigated by Femtosecond Transient Absorption Spectroscopy
by Yuyuan Zhang, Ashley A. Beckstead, Yuesong Hu, Xijun Piao, Dennis Bong and Bern Kohler
Molecules 2016, 21(12), 1645; https://doi.org/10.3390/molecules21121645 - 30 Nov 2016
Cited by 23 | Viewed by 10270
Abstract
Melamine may have been an important prebiotic information carrier, but its excited-state dynamics, which determine its stability under UV radiation, have never been characterized. The ability of melamine to withstand the strong UV radiation present on the surface of the early Earth is [...] Read more.
Melamine may have been an important prebiotic information carrier, but its excited-state dynamics, which determine its stability under UV radiation, have never been characterized. The ability of melamine to withstand the strong UV radiation present on the surface of the early Earth is likely to have affected its abundance in the primordial soup. Here, we studied the excited-state dynamics of melamine (a proto-nucleobase) and its lysine derivative (a proto-nucleoside) using the transient absorption technique with a UV pump, and UV and infrared probe pulses. For melamine, the excited-state population decays by internal conversion with a lifetime of 13 ps without coupling significantly to any photochemical channels. The excited-state lifetime of the lysine derivative is slightly longer (18 ps), but the dominant deactivation pathway is otherwise the same as for melamine. In both cases, the vast majority of excited molecules return to the electronic ground state on the aforementioned time scales, but a minor population is trapped in a long-lived triplet state. Full article
(This article belongs to the Special Issue Experimental and Computational Photochemistry of Bioorganic Molecules)
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10 pages, 870 KB  
Communication
Entrapment of Probiotics in Water Extractable Arabinoxylan Gels: Rheological and Microstructural Characterization
by Adriana Morales-Ortega, Elizabeth Carvajal-Millan, Francisco Brown-Bojorquez, Agustín Rascón-Chu, Patricia Torres-Chavez, Yolanda L. López-Franco, Jaime Lizardi-Mendoza, Ana L. Martínez-López and Alma C. Campa-Mada
Molecules 2014, 19(3), 3628-3637; https://doi.org/10.3390/molecules19033628 - 24 Mar 2014
Cited by 31 | Viewed by 8364
Abstract
Due to their porous structure, aqueous environment and dietary fiber nature arabinoxylan (AX) gels could have potential applications for colon-specific therapeutic molecule delivery. In addition, prebiotic and health related effects of AX have been previously demonstrated. It has been also reported that cross-linked [...] Read more.
Due to their porous structure, aqueous environment and dietary fiber nature arabinoxylan (AX) gels could have potential applications for colon-specific therapeutic molecule delivery. In addition, prebiotic and health related effects of AX have been previously demonstrated. It has been also reported that cross-linked AX can be degraded by bacteria from the intestinal microbiota. However, AX gels have not been abundantly studied as carrier systems and there is no information available concerning their capability to entrap cells. In this regard, probiotic bacteria such as Bifidobacterium longum have been the focus of intense research activity lately. The objective of this research was to investigate the entrapment of probiotic B. longum in AX gels. AX solution at 2% (w/v) containing B. longum (1 × 107 CFU/cm) formed gels induced by laccase as cross-linking agent. The entrapment of B. longum decreased gel elasticity from 31 to 23 Pa, probably by affecting the physical interactions taking place between WEAX chains. Images of AX gels containing B. longum viewed under a scanning electron microscope show the gel network with the bacterial cells entrapped inside. The microstructure of these gels resembles that of an imperfect honeycomb. The results suggest that AX gels can be potential candidates for the entrapment of probiotics. Full article
(This article belongs to the Section Natural Products Chemistry)
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