Search Results (78)

The Millard’s rat (Dacnomys millardi), a threatened murid endemic to Southeast Asian montane rainforests and the sole member of its monotypic genus, faces escalating endangered risks as a Near Threatened species in China’s Biodiversity Red List. This ecologically specialized rodent exhibits diagnostic morphological adaptations—hypertrophied upper molars and cryptic pelage—that underpin niche differentiation in undisturbed tropical/subtropical forests. Despite its evolutionary distinctiveness, the conservation prioritization given to Dacnomys is hindered due to a deficiency of data and unresolved phylogenetic relationships. Here, we integrated morphological analyses with the first complete mitogenome (16,289 bp in size; no structural rearrangements) of D. millardi to validate its phylogenetic placement within the subfamily Murinae and provide novel insights into genetic diversity erosion. Bayesian and maximum likelihood phylogenies robustly supported Dacnomys as sister to Leopoldamys (PP = 1.0; BS = 100%), with an early Pliocene divergence (~4.8 Mya, 95% HPD: 3.65–5.47 Mya). Additionally, based on its basal phylogenetic position within Murinae, we propose reclassifying Micromys from Rattini to the tribe Micromyini. Codon usage bias analyses revealed pervasive purifying selection (Ka/Ks < 1), constraining mitogenome evolution. Genetic diversity analyses showed low genetic variation (CYTB: π = 0.0135 ± 0.0023; COX1: π = 0.0101 ± 0.0025) in fragmented populations. We propose three new insights into this genetic diversity erosion. (1) Evolutionary constraints: genome-wide evolutionary conservation and shallow evolutionary history (~4.8 Mya) limited mutation accumulation. (2) Anthropogenic pressures: deforestation-driven fragmentation of habitats (>20,000 km²/year loss since 2000) has reduced effective population size, exacerbating genetic drift. (3) Ecological specialization: long-term adaptation to stable niches favored genomic optimization over adaptive flexibility. These findings necessitate suitable conservation action by enforcing protection of core habitats to prevent deforestation-driven population collapses and advocating IUCN reclassification of D. millardi from Data Deficient to Near Threatened. Full article

Aquatic fungi serve as core ecological engines in freshwater ecosystems, driving organic matter decomposition and energy flow to sustain environmental balance. Wetlands, with their distinct hydrological dynamics and nutrient-rich matrices, serve as critical habitats for these microorganisms. As an internationally designated Ramsar Site, Yunnan Dashanbao Black-Necked Crane National Nature Reserve in China not only sustains endangered black-necked cranes but also harbors a cryptic reservoir of aquatic fungi within its peat marshes and alpine lakes. This study employed high-throughput sequencing to characterize fungal diversity and community structure across 12 understudied wetland sites in the reserve, while analyzing key environmental parameters (dissolved oxygen, pH, total nitrogen, and total phosphorus). A total of 5829 fungal operational taxonomic units (OTUs) spanning 649 genera and 15 phyla were identified, with Tausonia (4.17%) and Cladosporium (1.89%) as dominant genera. Environmental correlations revealed 19 genera significantly linked to abiotic factors. FUNGuild functional profiling highlighted saprotrophs (organic decomposers) and pathogens as predominant trophic guilds. Saprotrophs exhibited strong associations with pH, total nitrogen, and phosphorus, whereas pathogens correlated primarily with pH. These findings unveil the hidden diversity and ecological roles of aquatic fungi in alpine wetlands, emphasizing their sensitivity to environmental gradients. By establishing baseline data on fungal community dynamics, this work advances the understanding of wetland microbial ecology and informs conservation strategies for Ramsar sites. Full article

The fungal family Mortierellaceae represents ubiquitous and ecologically significant components of soil ecosystems across terrestrial habitats. Through an integrative taxonomic approach combining multi-locus phylogenetic analyses (ITS, LSU, SSU rDNA, RPB1, and Act) with detailed morphological examinations of rhizosphere soil isolates, four novel species within this family were proposed. This study elucidates the morphological distinctions of novel species from allied species and the phylogenetic relationships among the novel and existing species within the family. Linnemannia rotunda sp. nov. (closely related to L. longigemmata) is distinguished by its globose sporangia and sporangiospores. Mortierella acuta sp. nov. (clustering with M. yunnanensis) is characterized by spiky collarettes. Mortierella oedema sp. nov. (a sister to M. macrocystis) exhibits distinctive ampulliform swellings. Mortierella tibetensis sp. nov. (clustering with M. parvispora) is named for its geographic origin in Tibet. As the eighth installment in a systematic investigation of early diverging fungal groups in China, this work expands the global taxonomic inventory of Mortierellaceae to 148 species, underscoring the ongoing discovery of cryptic biodiversity within this ecologically pivotal group. Full article

The tubes of polychaetes of the genus Chaetopterus (Annelida: Chaetopteridae) provide habitat for cryptic, symbiotic organisms that are often overlooked when examining diversity. Our study employed molecular phylogenetics to examine the diversity of symbiont species associated with Chaetopterus djiboutiensis stat. nov., collected from the Gulf of Tadjoura, Djibouti. A total of 15 Chaetopterus hosts and their associated symbionts were collected from nine coastal sites. Four genetic regions were targeted for PCR amplification: the mitochondrial cytochrome oxidase subunit I and 16S rDNA and the nuclear 18S rDNA and Histone H3. Chaetopterus djiboutiensis was redescribed from topotypic material and elevated to species rank, and a neotype specimen was designated. Phylogenetic and morphological analysis confirmed five species associated with C. djiboutiensis in Djibouti: two porcelain crabs, Polyonyx pedalis and Polyonyx socialis; one nudibranch, Tenellia chaetopterana; one fish, Onuxodon sp.; and one amphipod, Leucothoe sp. A. As only the fourth comprehensive study on Chaetopterus symbionts, our study highlights the diversity and community patterns of symbionts associated with these unique tubicolous marine polychaetes. Full article

Often thought of as a mesic paradise, forest ecosystems are a mosaic of microhabitats with temporal oscillations that cause significant environmental stresses, providing habitats for extremophilic and extremotolerant fungi. Adapted to survive and thrive under conditions lethal to most mesophiles (e.g., extreme temperatures, pH, water potential, radiation, salinity, nutrient scarcity, and pollutants), these species are increasingly recognized as vital yet underappreciated elements of forest biodiversity and function. This review examines the current understanding of the roles of extremophilic fungi in forests, scrutinizing their presence in these ecosystems with a critical eye. Particularly under severe environmental conditions, extremophilic fungi play a crucial role in forest ecosystems, as they significantly enhance decomposition and nutrient cycling, and foster mutualistic interactions with plants that increase stress resilience. This helps to maintain ecosystem stability. We examine the definition of “extreme” within forest settings, survey the known diversity and distribution of these fungi across various forest stress niches (cold climates, fire-affected areas, acidic soils, canopy surfaces, polluted sites), and delve into their possible ecological functions, including decomposition of recalcitrant matter, nutrient cycling under stress, interactions with plants (pathogenesis, endophytism, perhaps mycorrhizae), bioremediation, and contributions to soil formation. However, the review stresses significant methodological difficulties, information gaps, and field-based natural biases. We recommend overcoming cultural constraints, enhancing the functional annotation of “omics” data, and planning investigations that clarify the specific activities and interactions of these cryptic creatures within the forest matrix to further advance the field. Here, we demonstrate that moving beyond simple identification to a deeper understanding of function will enable us to more fully appreciate the value of extremophilic fungi in forest ecosystems, particularly in relation to environmental disturbances and climate change. Full article

Sympatric species often exhibit habitat differences that promote coexistence. Two cryptic, sympatric salamander species, Desmognathus folkertsi and D. amphileucus, occupy streams across the Appalachian Mountains of northeastern Georgia, USA. Although frequently occurring together, the adults exhibit differences in microhabitat with D. folkertsi predominating in smaller streams and D. amphileucus more abundant in larger streams. Our purpose was to test for possible differences in larval habitat. Using a stream in which the two species coexist, we collected larvae from riffles, and biotic and abiotic variables associated with the stream and adjacent riparian zone were recorded. Because adults partially segregate by stream size, we noted the entry of a tributary that increased stream size and flow rate. Results showed a significant distribution of the two species upstream compared to downstream of the tributary, with no D. amphileucus found upstream; D. folkertsi was found throughout the study stream. We also found a significant difference between species in flow rate. We found no differences in any other variable that explained larval distribution patterns. We hypothesize that D. folkertsi nest in lower-flow riffles than D. amphileucus, resulting in the distribution of larvae, a pattern that may reflect selection on larval survival. Full article

The Eurasian eagle-owl (Bubo bubo) is a large, generalist predator widely distributed across Eurasia, including mainland Greece, where it occupies a broad range of habitats. Its diet is known to consist primarily of mammals and birds, with reptiles occasionally included. However, to date, chameleons have not been documented among its prey. Here, we report the first confirmed case of B. bubo preying on an African chameleon (Chamaeleo africanus) in the western Peloponnese of southern Greece—a region where the two species occur in limited sympatry. C. africanus, native to North Africa and introduced to Greece since antiquity, is a diurnal, slow-moving, arboreal lizard with highly cryptic behavior and specialized anti-predator strategies. Despite these traits, our observation highlights its potential vulnerability to nocturnal avian predators. This rare predation event offers novel insights into the trophic ecology of B. bubo and raises important considerations for the conservation of C. africanus, a species listed as Critically Endangered in Greece and increasingly threatened by habitat loss, illegal collection, and road traffic collisions. Full article

An analysis of the age structure of three water frog species (P. lessonae, P. ridibundus, P. esculentus) in the Middle Volga region of Russia was conducted. The skeletochronological method determined their maximum lifespans to be 7, 6, and 4 years, respectively. This study revealed specific characteristics of the age structure of Pelophylax frogs in relation to their taxonomic composition when cohabiting (population system type) and the degree of habitat transformation. Differences in body size and lifespan were observed among cryptic forms exhibiting mitochondrial DNA replacement and the presence of various types of heterozygous and homozygous alleles. Water frogs of the genus Pelophylax have a complex taxonomic structure, including hybrid species and morphologically cryptic forms, as well as massive mitochondrial DNA introgression. The aim of our paper was to analyze the age structure of three species of water frogs (P. lessonae, P. ridibundus, and P. esculentus) in the Middle Volga River region (European Russia). Based on the skeletochronological method, we determined their maximum lifespans of seven, six, and four years, respectively. The onset of sexual maturity in the marsh frogs occurred after two and four winterings in males and females (respectively), in the pond frog—one to two years, and in the edible frog—one to three years. This study revealed specific characteristics of the age structure of Pelophylax frogs in relation to their taxonomic composition when cohabiting (population system type) and the degree of habitat transformation. Differences in body size and lifespan were observed among cryptic forms exhibiting mitochondrial DNA replacement and the presence of various types of heterozygous and homozygous alleles. Full article

Jewel beetles of the genus Sternocera are widely distributed across tropical regions, including Thailand and Lao PDR, where the green-legged S. aequisignata Saunders, 1866, and red-legged S. ruficornis Saunders, 1866, are commonly found. These jewel beetles have significant economic importance, as they are edible, and their iridescent wings are used to create jewelry, leading to high market demand and intensive harvesting. Additionally, their habitats are being rapidly destroyed, resulting in population decline. However, genetic information on these species remains limited. This study aims to investigate the genetic diversity of S. aequisignata and S. ruficornis from various localities in Thailand and Lao PDR using mitochondrial cytochrome c oxidase subunit 1 (CO1) and 16S ribosomal DNA (16S rDNA) sequences. High genetic diversity was observed, with 45 and 62 CO1 haplotypes and 35 and 28 16S rDNA haplotypes identified in S. aequisignata and S. ruficornis populations, respectively. Haplotype network and phylogenetic analyses clearly distinguish S. aequisignata from S. ruficornis. Based on CO1 sequences, S. aequisignata was divided into three distinct haplogroups (GG1–GG3). Haplogroup GG1 was the most widespread, occurring in both Thailand and Lao PDR, while haplogroups GG2 and GG3 were restricted to some localities in northern, western, and northeastern Thailand, as well as Lao PDR. These findings suggest the presence of cryptic diversity within S. aequisignata, with at least three genetically distinct groups. Further comprehensive studies on the biology, ecology, and genetic diversity of these jewel beetles across their distribution range are essential to better understand their evolutionary dynamics. Full article

The importance of habitats, particularly burrows, for intertidal crustaceans is multifaceted. These habitats provide crucial shelter, food sources, and reproductive advantages that are essential for enhancing survival and fitness. However, maintaining these habitats can be costly, influencing whether individuals adapt to or relocate under changing environments. Burrowing mud shrimp present challenges when it comes to studying their behaviours and burrow morphology, owing to their cryptic lifestyle. In this study, we investigated burrow morphology and burrowing behaviour in the mud shrimp, Trypaea australiensis, to better understand the importance of burrows for these organisms. Firstly, we quantified burrow morphology in situ using resin casts and 3D imagery at two locations. Secondly, we examined shrimp burrowing behaviour in custom-made aquarium cuvettes in the laboratory. Resin casts showed that burrows at Shoalhaven Heads exhibited larger burrows with greater variation in the length of burrow measurements compared to burrows at Port Hacking. Laboratory observations of burrowing behaviour demonstrated that shrimp dedicate a large proportion of time to maintaining the structure of their burrows, irrespective of time of day or shrimp sex. Differences were observed between size categories, where smaller individuals were observed sitting significantly more and ventilating significantly less compared to larger individuals. Overall, our study provides a quantitative insight into the importance of burrow habitats and provides the first insights into burrowing behaviour and burrow structure for this endemic ecosystem engineer. Full article

The spread of non-native species threatens biodiversity and exacerbates societal challenges like food security. To address this, effective conservation programs require detection methods that are easy to implement, accurate, and non-invasive. Over the past 15 years, environmental DNA (eDNA) techniques have gained popularity, surpassing traditional sampling methods. In this context, our study focused on tracking the invasive host–pathogen complex Pseudorasbora parva and Sphaerothecum destruens using eDNA metabarcoding. We collected water samples from freshwater canals over five months in the Camargue region, and once in Corsica Island, both in southern France. Total DNA was extracted from filtered water samples, and PCR-amplicons were sequenced using Illumina or Nanopore technologies. Our results revealed a high detection rate of P. parva in lentic ecosystems, aligning with habitat preferences of this small freshwater fish. Additionally, the detection rate in Camargue increased in May and June, likely due to the peak of the spawning season, which leads to more DNA being released into the environment (i.e., concentration and interaction of individuals). While eDNA successfully detected this invasive fish, we were unable to detect its cryptic fungal parasite, S. destruens, highlighting the challenges of identifying intracellular and cryptic fungal pathogens through eDNA methods. Full article

Obtaining precise estimates of population size and trends through time is important for the effective management and conservation of threatened species. For parrots (Psittaciformes: Psittacidae), obtaining such estimates can be challenging, particularly for cryptic species that occur in low densities in complex and/or fragmented habitats. We used a statistical resampling approach with the aim to compare the reliability and precision of counts for the critically endangered Tasman parakeet (Cyanoramphus cookii) that were taken using two methods on Norfolk Island (Pacific Ocean), namely, fixed-point counts and line transect counts. The detections obtained during fixed-point counts had better estimated precision (0.274) than line transect counts (0.476). The fixed-point method was also more efficient, yielding 1.338 parakeet detections per count compared to the 0.642 parakeet detections per count obtained by the line transect method. Although Tasman parakeets can be detected by either of these methods, our research demonstrates that the fixed-point method is more precise and reliable. These findings can help prioritise resources for the long-term monitoring of recovering populations of this species and similar island species. Full article

Increasing temperatures due to climate change can favor more thermophilic species, allowing them to expand their territories northward. For the Isabelline Wheatear (Oenanthe isabellina), climate change may facilitate further range expansion as higher temperatures and changing precipitation patterns create more favorable conditions in new areas. The Isabelline Wheatear is a small passerine bird belonging to the Old-World flycatchers. This species’ breeding range extends from temperate southeastern Europe and Asia Minor across arid desert and steppe regions to subtropical northern areas. Its habitat preference includes arid environments characterized by high temperatures, low precipitation, and open spaces. Field observations were collected over four breeding seasons (2021–2024) through the Common Bird Monitoring scheme and occasional observations. Prediction models also incorporated observations from scientific literature and online databases for covering neighboring areas in Ukraine and Romania. Using Maxent species distribution models (SDMs) and all presence locations and bioclimatic variables, predicted modes were built to identify new suitable areas for the Isabelline Wheatear. Most of the predicted range lies close to the Black Sea coast, in southeastern and southwestern Moldova. According to available data, the Isabelline Wheatear inhabits the southern third of Moldova. Fifteen locations have been identified as hosting breeding populations in proper habitats. Until 2021, the Isabelline Wheatear was considered a recent cryptic or overlooked breeding species in Moldova. This is likely due to several factors, including its recent entry into the country’s territory, potentially from two different directions at different times. The new data and predictive models provide valuable insights into the current distribution and future expansion potential of this species, underscoring the dynamic nature of avian responses to climate change. Full article

The Central Australian red honey-pot ant Melophorus bagoti maintains non-cryptic ground-nesting colonies in the semi-desert habitat, performing all the activities outside the nest during the hottest periods of summer days. These ants rely on path integration and view-based cues for navigation. They manage waste by taking out unwanted food, dead nestmates, and some other wastes, typically depositing such items at distances > 5 m from the nest entrance, a process called dumping. We found that over multiple runs, dumpers headed in the same general direction, showing sector fidelity. Experienced ants dumped waste more efficiently than naive ants. Naive individuals, lacking prior exposure to the outdoor environment around the nest, exhibited much scanning and meandering during waste disposal. In contrast, experienced ants dumped waste with straighter paths and a notable absence of scanning behaviour. Furthermore, experienced dumpers deposited waste at a greater distance from the nest compared to their naive counterparts. We also investigated the navigational knowledge of naive and experienced dumpers by displacing them 2 m away from the nest. Naive dumpers were not oriented towards the nest in their initial trajectory at any of the 2 m test locations, whereas experienced dumpers were oriented towards the nest at all test locations. Naive dumpers were nest-oriented as a group, however, at the test location nearest to where they dumped their waste. These differences suggest that in red honey ants, learning supports waste disposal, with dumping being refined through experience. Dumpers gain greater spatial knowledge through repeated runs outside the nest, contributing to successful homing behaviour. Full article

The first record of bramble sharks (Echinorhinus brucus) in the United Arab Emirates is presented. In situ observations of multiple bramble sharks were made at depths between 460 and 720 m from two piloted submersibles and a remotely operated vessel, representing the first known observations of this species in its native deep-water habitat in Arabia and the Indian Ocean. Notably, this research expands on the documented regional distribution of E. brucus for the Gulf of Oman/Arabian Sea and extends this species’ regional records to deeper mesophotic zones. These findings underscore the need for further research to understand the ecology and distribution of this cryptic shark species, particularly given its global endangered status and the limited knowledge of its regional population dynamics. Full article