Sign in to use this feature.

Years

Between: -

Subjects

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Journals

Article Types

Countries / Regions

Search Results (4)

Search Parameters:
Keywords = antirestriction proteins

Order results
Result details
Results per page
Select all
Export citation of selected articles as:
12 pages, 1597 KB  
Article
DNA-Mimic Antirestriction Proteins ArdA Could Regulate Gene Expression in Escherichia coli
by Anna A. Utkina, Anna A. Kudryavtseva, Rodion V. Berezov, Kamilla V. Mekhantseva, Olga E. Melkina, Sergey M. Rastorguev, Mikhail A. Skutel, Artem B. Isaev and Ilya V. Manukhov
Int. J. Mol. Sci. 2026, 27(12), 5595; https://doi.org/10.3390/ijms27125595 - 20 Jun 2026
Cited by 1 | Viewed by 416
Abstract
Antirestriction proteins protect mobile genetic elements from the host’s restriction-modification systems. Here, we investigated the ability of ArdA and ArdB antirestriction proteins to regulate gene expression in an engineered E. coli K-12 MG1655-based biosensor strain. This biosensor strain harbors a lux-based reporter [...] Read more.
Antirestriction proteins protect mobile genetic elements from the host’s restriction-modification systems. Here, we investigated the ability of ArdA and ArdB antirestriction proteins to regulate gene expression in an engineered E. coli K-12 MG1655-based biosensor strain. This biosensor strain harbors a lux-based reporter system controlled by the AllR-repressed promoter. Although structurally similar, DNA-mimic ArdA proteins interact with AllR differently. Recently described small sArdC and well-known ArdA from the conjugative plasmid R64 appear to bind AllR and open the promoter, while the other tested antirestriction proteins (small sArdN protein and various full-sized ArdA proteins from different sources) have no effect on gene expression under AllR-controlled promoter. Direct binding between ArdA and AllR was experimentally confirmed using pull-down assays with His-tagged ArdA. Our study opens up prospects for the specific use of antirestriction proteins for the regulation of gene expression. Surprisingly, ArdB, a non-DNA-mimic antirestriction protein used initially as a control, was also able to open the promoter, apparently through nonspecific interaction with DNA. We verified this effect with a distant ArdB homolog from a rhizobacterium, which was also able to open the promoter. Full article
Show Figures

Figure 1

12 pages, 2084 KB  
Article
BlihIA—A Novel Type I Restriction-Modification System from Bacillus licheniformis Is Sensitive to In Vitro Inhibition by ArdB Antirestriction Protein
by Anna Kudryavtseva, Rodion Berezov, Anna Utkina, Oksana Kotovskaya, Mikhail Skutel, Anna Trofimova, Artem Isaev and Ilya Manukhov
Int. J. Mol. Sci. 2025, 26(17), 8674; https://doi.org/10.3390/ijms26178674 - 5 Sep 2025
Cited by 4 | Viewed by 2151
Abstract
Type I restriction-modification (RMI) systems play a crucial role in bacterial defense against mobile elements by distinguishing self and foreign DNA through sequence-specific methylation and cleavage. Here, we characterize BlihIA, a novel RMI system from Bacillus licheniformis DSM13 which features redundancy in its [...] Read more.
Type I restriction-modification (RMI) systems play a crucial role in bacterial defense against mobile elements by distinguishing self and foreign DNA through sequence-specific methylation and cleavage. Here, we characterize BlihIA, a novel RMI system from Bacillus licheniformis DSM13 which features redundancy in its hsdS gene copies. Using ONT sequencing, we identify the bipartite recognition site of BlihIA as RTAC(N)5GCT. We demonstrate the system’s activity both in vivo through efficiency of plaquing (EOP) assay and in vitro in a nuclease reaction with purified BlihIA complex. Notably, mutation of the recognition site abolished in vitro DNA cleavage, confirming sequence specificity. Furthermore, we show that the antirestriction protein ArdB from plasmid R64 effectively prevents DNA cleavage by BlihIA, suggesting a direct mechanism of inhibition. This study provides the first functional characterization of a novel RM system BlihIA, extending the diversity of RM systems in Bacillus species and suggesting potential applications for improving genetic transformation in industrial strains. Full article
(This article belongs to the Section Molecular Informatics)
Show Figures

Figure 1

15 pages, 1852 KB  
Article
Survival Strategies of Staphylococcus aureus: Adaptive Regulation of the Anti-Restriction Gene ardA-H1 Under Stress Conditions
by Flavia Costa Carvalho de Andrade, Mariana Fernandes Carvalho and Agnes Marie Sá Figueiredo
Antibiotics 2024, 13(12), 1131; https://doi.org/10.3390/antibiotics13121131 - 25 Nov 2024
Viewed by 2457
Abstract
Background/Objective: The anti-restriction protein ArdA-H1, found in multiresistant Staphylococcus aureus (MRSA) strains from the ST239-SCCmecIII lineage, inhibits restriction–modification systems, fostering horizontal gene transfer (HGT) and supporting genetic adaptability and resistance. This study investigates the regulatory mechanisms controlling ardA-H1 expression [...] Read more.
Background/Objective: The anti-restriction protein ArdA-H1, found in multiresistant Staphylococcus aureus (MRSA) strains from the ST239-SCCmecIII lineage, inhibits restriction–modification systems, fostering horizontal gene transfer (HGT) and supporting genetic adaptability and resistance. This study investigates the regulatory mechanisms controlling ardA-H1 expression in S. aureus under various stress conditions, including acidic pH, iron limitation, and vancomycin exposure, and explores the roles of the Agr quorum sensing system. Methods: The expression of ardA-H1 was analyzed in S. aureus strains exposed to environmental stressors using real-time quantitative reverse transcription PCR. Comparisons were made between Agr-functional and Agr-deficient strains. In addition, Agr inhibition was achieved using a heterologous Agr autoinducing peptide. Results: The Agr system upregulated ardA-H1 expression in acidic and iron-limited conditions. However, vancomycin induced ardA-H1 activation specifically in the Agr-deficient strain GV69, indicating that an alternative regulatory pathway controls ardA-H1 expression in the absence of agr. The vancomycin response in GV69 suggests that diminished quorum sensing may offer a survival advantage by promoting persistence and HGT-related adaptability. Conclusion: Overall, our findings provide new insights into the intricate relationships between quorum-sensing, stress responses, bacterial virulence, and genetic plasticity, enhancing our understanding of S. aureus adaptability in challenging environments. Full article
(This article belongs to the Special Issue Antimicrobial Resistance Genes: Spread and Evolution)
Show Figures

Figure 1

14 pages, 1555 KB  
Review
A Review of the Functional Annotations of Important Genes in the AHPND-Causing pVA1 Plasmid
by Hao-Ching Wang, Shin-Jen Lin, Arpita Mohapatra, Ramya Kumar and Han-Ching Wang
Microorganisms 2020, 8(7), 996; https://doi.org/10.3390/microorganisms8070996 - 3 Jul 2020
Cited by 30 | Viewed by 8039
Abstract
Acute hepatopancreatic necrosis disease (AHPND) is a lethal shrimp disease. The pathogenic agent of this disease is a special Vibrio parahaemolyticus strain that contains a pVA1 plasmid. The protein products of two toxin genes in pVA1, pirAvp and pirBvp, targeted [...] Read more.
Acute hepatopancreatic necrosis disease (AHPND) is a lethal shrimp disease. The pathogenic agent of this disease is a special Vibrio parahaemolyticus strain that contains a pVA1 plasmid. The protein products of two toxin genes in pVA1, pirAvp and pirBvp, targeted the shrimp’s hepatopancreatic cells and were identified as the major virulence factors. However, in addition to pirAvp and pirBvp, pVA1 also contains about ~90 other open-reading frames (ORFs), which may encode functional proteins. NCBI BLASTp annotations of the functional roles of 40 pVA1 genes reveal transposases, conjugation factors, and antirestriction proteins that are involved in horizontal gene transfer, plasmid transmission, and maintenance, as well as components of type II and III secretion systems that may facilitate the toxic effects of pVA1-containing Vibrio spp. There is also evidence of a post-segregational killing (PSK) system that would ensure that only pVA1 plasmid-containing bacteria could survive after segregation. Here, in this review, we assess the functional importance of these pVA1 genes and consider those which might be worthy of further study. Full article
Show Figures

Graphical abstract

Back to TopTop