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24 pages, 2803 KiB  
Review
Mammal Fauna Changes in Baltic Countries During Last Three Decades
by Linas Balčiauskas, Valdis Pilāts and Uudo Timm
Diversity 2025, 17(7), 464; https://doi.org/10.3390/d17070464 - 1 Jul 2025
Viewed by 653
Abstract
We examined three decades of changes in the mammal fauna of Estonia, Latvia, and Lithuania in the context of climate variability, land use transformation, and anthropogenic pressures. We compiled distributional, abundance, and status data from publications, atlases, official game statistics, and long-term monitoring [...] Read more.
We examined three decades of changes in the mammal fauna of Estonia, Latvia, and Lithuania in the context of climate variability, land use transformation, and anthropogenic pressures. We compiled distributional, abundance, and status data from publications, atlases, official game statistics, and long-term monitoring programs, and we evaluated trends using compound annual growth rates or temporal indices. Our review identified losses such as regional extinctions of garden dormice and European mink, declines in small insectivores (e.g., pond bats and shrews) and herbivores (e.g., Microtus voles), and the contraction of boreal specialists (e.g., Siberian flying squirrels). However, we also identified gains, including increases in ungulate numbers (e.g., roe deer, red deer, fallow deer, moose, and wild boars before African swine fewer outbreak) and the recovery of large carnivores (e.g., wolves and lynxes). Invasions by non-native species (e.g., American mink, raccoon dog, and raccoon) and episodic disturbances, such as African swine fever and the “anthropause” caused by the SARS-CoV-2 pandemic, have further reshaped community composition. The drivers encompass climatic warming, post-socialist forest succession, intensified hunting management, and rewilding policies, with dispersal capacity mediating the responses of species. Our results underscore the dual legacy of historical land use and contemporary climate forcing in structuring the fauna dynamics of Baltic mammal communities in the face of declining specialists and invasive taxa. Full article
(This article belongs to the Special Issue Diversity in 2025)
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24 pages, 3317 KiB  
Review
A Review of the Conservation Status of Shorebirds in Mongolia
by Sundev Gombobaatar, Dorj Ususkhjargal and Reuven Yosef
Animals 2024, 14(12), 1752; https://doi.org/10.3390/ani14121752 - 10 Jun 2024
Viewed by 1726
Abstract
We present the first comprehensive review of 62 migratory shorebird species in Mongolia, covering their ecological status, IUCN assessments at regional or national levels, population trends, threats, and conservation measures. Mongolia hosts a total of 62 shorebird species from twenty-two genera and seven [...] Read more.
We present the first comprehensive review of 62 migratory shorebird species in Mongolia, covering their ecological status, IUCN assessments at regional or national levels, population trends, threats, and conservation measures. Mongolia hosts a total of 62 shorebird species from twenty-two genera and seven families, with six species classified as globally threatened: the Critically Endangered Sociable Lapwing, the Endangered Siberian Sandplover, the Far Eastern Curlew, the Great Knot, and the Vulnerable Sharp-Tailed Sandpiper. Both national and global IUCN Red List assessments highlight Mongolia’s significance as a breeding and passage migrating site for globally threatened and Near-Threatened shorebirds. Species richness is higher in northern regions compared to the south, with the highest diversity found in areas with complex aquatic ecosystems. Global population trends indicate a decline in 61% of species, with 18% remaining stable, 16% of unknown status, and 5% increasing. At the national level, most species are stable (61%), 34% status is unknown, and 5% are decreasing. Anthropogenic-induced threats, including habitat loss and degradation, pollution, disturbance, and harvesting, pose significant risks to 69% of species, while natural disasters affect 11%. Additionally, 8% of species are impacted by accidental mortality and intrinsic factors, and 5% by changes in native species. Despite these threats, no specific conservation action plans exist for shorebirds in Mongolia. However, general conservation measures are in place, such as environmental and fauna protection laws, regulations on foreign trade in endangered species, and the establishment of protected areas under governmental resolutions. Mongolia also participates in international conventions like the Convention on Biological Diversity (CBD), Ramsar, and Migratory Species (CMS), and has developed national red lists, red books, and publications such as “A Summary Conservation Action Plan for Mongolian Birds”, “Important Bird Areas” to support conservation efforts. Full article
(This article belongs to the Special Issue Recent Advances in Waterbird Ecology and Conservation)
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20 pages, 2929 KiB  
Article
Effects of an Invasive Bark Beetle Polygraphus proximus Blandf. Outbreak on Carbon Pool Dynamics in West Siberian Dark Coniferous Forests
by Ivan A. Kerchev, Elvina M. Bisirova, Nikita A. Smirnov, Igor G. Grachev, Artem N. Nikiforov and Daria A. Kalashnikova
Forests 2024, 15(3), 542; https://doi.org/10.3390/f15030542 - 15 Mar 2024
Cited by 2 | Viewed by 1576
Abstract
Invasions of dendrophagous insects pose major threats to forest ecosystems and to the timber industry. The alien species bark beetle Polygraphus proximus Blandf. of Far Eastern origin has caused Siberian fir dieback in vast areas within several regions of Russia. Rapid spread of [...] Read more.
Invasions of dendrophagous insects pose major threats to forest ecosystems and to the timber industry. The alien species bark beetle Polygraphus proximus Blandf. of Far Eastern origin has caused Siberian fir dieback in vast areas within several regions of Russia. Rapid spread of the pest and its outbreaks raise the issue of preserving the most important functions, including carbon sequestration, by the damaged forests. In this study, monitoring of carbon pool dynamics was carried out during 2012–2023 on four sample plots showing various degrees of damage in the southern taiga zone of Western Siberia in the Larinsky Landscape Reserve. Dynamics of the forest stands’ vitality were reflected in a rapid decline of the number of viable trees and an increase in amounts of deadwood, debris, and soil composition, resulting in a transformation of the natural biological carbon cycle in the native dark coniferous ecosystems. Full article
(This article belongs to the Special Issue Greenhouse Gas Dynamics and Balance in Forest-Peatland Ecosystem)
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13 pages, 2812 KiB  
Article
Simple and Complex Substrates (Sugar, Acetate and Milk Whey) for In Situ Bioremediation of Groundwater with Nitrate and Actinide Contamination
by Ivan Myasnikov, Grigory Artemiev, Elena Lavrinovich, Irina Kazinskaya, Alexander Novikov and Alexey Safonov
Hydrology 2023, 10(8), 175; https://doi.org/10.3390/hydrology10080175 - 18 Aug 2023
Cited by 1 | Viewed by 1851
Abstract
The complex contamination of groundwater near radioactive waste repositories by nitrates and actinides is a common problem for many nuclear fuel cycle facilities. One of the effective methods to remove nitrates and reduce actinide migration activity is bioremediation through the activation of native [...] Read more.
The complex contamination of groundwater near radioactive waste repositories by nitrates and actinides is a common problem for many nuclear fuel cycle facilities. One of the effective methods to remove nitrates and reduce actinide migration activity is bioremediation through the activation of native microbial communities by soluble electron donors and carbon sources. This work evaluated the effectiveness of using simple and complex electron donors to remove nitrate in the microbial community in an aquifer near the B2 storage of the Siberian Chemical Combine (Seversk, Siberia). The addition of sugar and milk whey led to the maximum efficiency of nitrate-ion removal and a decrease in the redox potential of the system, creating optimal conditions for the immobilization of actinide. Special attention was paid to the behavior of uranium, plutonium, neptunium, and americium under conditions simulating groundwater when sugar, acetate, and milk whey were added and when microbial metabolic products were formed. Neither microbial metabolites nor organic solutions were found to have a significant effect on the leaching of neptunium. At the same time, for plutonium, a decrease in yield was observed when rocks were treated with organic solutions were compared to groundwater treatment without them. Plutonium leaching is significantly affected by rock composition. In rocks with a low clay fraction content, its yield can reach 40%. At the same time, microbial metabolites can increase americium (Am) desorption from rocks with a low clay fraction content. Additionally, particle size analysis was performed using a step-by-step filtration approach, aiming to evaluate the risks that are associated with colloidal phase formation. It was shown that microbiological stimulation resulted in particle enlargement, substantially diminishing the presence of actinides in the form of dissolved or sub-50 nm nanoparticles. This outcome significantly reduced the potential for colloidal and pseudocolloidal transfer, thereby lowering associated risks. Full article
(This article belongs to the Special Issue Novel Approaches in Contaminant Hydrology and Groundwater Remediation)
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21 pages, 8480 KiB  
Article
Integrating Full-Length Transcriptome and RNA Sequencing of Siberian Wildrye (Elymus sibiricus) to Reveal Molecular Mechanisms in Response to Drought Stress
by Qingqing Yu, Yi Xiong, Xiaoli Su, Yanli Xiong, Zhixiao Dong, Junming Zhao, Xin Shu, Shiqie Bai, Xiong Lei, Lijun Yan and Xiao Ma
Plants 2023, 12(14), 2719; https://doi.org/10.3390/plants12142719 - 21 Jul 2023
Cited by 3 | Viewed by 2172
Abstract
Drought is one of the most significant limiting factors affecting plant growth and development on the Qinghai–Tibet Plateau (QTP). Mining the drought-tolerant genes of the endemic perennial grass of the QTP, Siberian wildrye (Elymus sibiricus), is of great significance to creating [...] Read more.
Drought is one of the most significant limiting factors affecting plant growth and development on the Qinghai–Tibet Plateau (QTP). Mining the drought-tolerant genes of the endemic perennial grass of the QTP, Siberian wildrye (Elymus sibiricus), is of great significance to creating new drought-resistant varieties which can be used in the development of grassland livestock and restoring natural grassland projects in the QTP. To investigate the transcriptomic responsiveness of E. sibiricus to drought stress, PEG-induced short- and long-term drought stress was applied to two Siberian wildrye genotypes (drought-tolerant and drought-sensitive accessions), followed by third- and second-generation transcriptome sequencing analysis. A total of 40,708 isoforms were detected, of which 10,659 differentially expressed genes (DEGs) were common to both genotypes. There were 2107 and 2498 unique DEGs in the drought-tolerant and drought-sensitive genotypes, respectively. Additionally, 2798 and 1850 DEGs were identified in the drought-tolerant genotype only under short- and long-term conditions, respectively. DEGs numbering 1641 and 1330 were identified in the drought-sensitive genotype only under short- and long-term conditions, respectively. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed that all the DEGs responding to drought stress in E. sibiricus were mainly associated with the mitogen-activated protein kinase (MAKP) signaling pathway, plant hormone signal transduction, the linoleic acid metabolism pathway, the ribosome pathway, and plant circadian rhythms. In addition, Nitrate transporter 1/Peptide transporter family protein 3.1 (NPF3.1) and Auxin/Indole-3-Acetic Acid (Aux/IAA) family protein 31(IAA31) also played an important role in helping E. sibiricus resist drought. This study used transcriptomics to investigate how E. sibiricus responds to drought stress, and may provide genetic resources and references for research into the molecular mechanisms of drought resistance in native perennial grasses and for breeding drought-tolerant varieties. Full article
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15 pages, 8719 KiB  
Article
Internal Structures of Placer Gold as an Indicator of Endogenous and Exogenous Processes
by Zinaida Nikiforova
Minerals 2023, 13(1), 68; https://doi.org/10.3390/min13010068 - 30 Dec 2022
Cited by 5 | Viewed by 2191
Abstract
The study of the internal structures of placer gold on the territory of the east of the Siberian platform, overlain by a thick cover of Mz-Kz deposits, where traditional methods of searching for gold deposits are not effective, allowed us to determine, for [...] Read more.
The study of the internal structures of placer gold on the territory of the east of the Siberian platform, overlain by a thick cover of Mz-Kz deposits, where traditional methods of searching for gold deposits are not effective, allowed us to determine, for the first time, the stages of ore formation and conditions of its occurrence. The identified indicators of the internal structures of placer gold (structures of primary recrystallization, secondary recrystallization, thick high-grade shells) indicate that placer gold content is formed mainly due to the supply and repeated redeposition of native gold from ancient gold-bearing deposits of the Precambrian stage of ore formation to younger ones. The discovered coarse-, medium-grained, mono-grained, unclear-zonal, granulation and disintegration structures suggest a supply of gold from nearby ore sources of the Mesozoic stage of ore formation. In the weathering crust, a high-grade shell is formed. In the hydrodynamic environment, the internal structures of gold practically do not change and fully correspond to the internal structures of endogenous gold. In aeolian conditions, the internal structures are transformed. In ancient gold-bearing conglomerates, under the impact of lithostatic pressure, as well as in metamorphogenic conditions, when the PT conditions change, the internal structure changes. Thus, for the first time, on a huge factual material, it is proved that the internal structures contain extensive information both about the endogenous origin of gold (the stages of ore formation—Precambrian and Mesozoic) and about its transformation in various exogenous conditions. The identified indicator of the internal structures of placer gold for certain types of sources contribute to a more correct selection of methods for searching for ore and placer gold deposits in closed territories and assessing their prospects. The use of this method makes it possible to develop criteria for forecasting different sources and types of gold deposits based on internal structures. Full article
(This article belongs to the Special Issue Native Gold as a Specific Indicator Mineral for Gold Deposits)
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18 pages, 2276 KiB  
Article
Genetic Diversity and Possible Origins of the Hepatitis B Virus in Siberian Natives
by Victor Manuylov, Vladimir Chulanov, Ludmila Bezuglova, Elena Chub, Anastasia Karlsen, Karen Kyuregyan, Yulia Ostankova, Alexander Semenov, Ludmila Osipova, Tatjana Tallo, Irina Netesova, Artem Tkachuk, Vladimir Gushchin, Sergey Netesov, Lars O. Magnius and Heléne Norder
Viruses 2022, 14(11), 2465; https://doi.org/10.3390/v14112465 - 7 Nov 2022
Cited by 4 | Viewed by 2554
Abstract
A total of 381 hepatitis B virus (HBV) DNA sequences collected from nine groups of Siberian native populations were phylogenetically analyzed along with 179 HBV strains sampled in different urban populations of former western USSR republics and 50 strains from Central Asian republics [...] Read more.
A total of 381 hepatitis B virus (HBV) DNA sequences collected from nine groups of Siberian native populations were phylogenetically analyzed along with 179 HBV strains sampled in different urban populations of former western USSR republics and 50 strains from Central Asian republics and Mongolia. Different HBV subgenotypes predominated in various native Siberian populations. Subgenotype D1 was dominant in Altaian Kazakhs (100%), Tuvans (100%), and Teleuts (100%) of southern Siberia as well as in Dolgans and Nganasans (69%), who inhabit the polar Taimyr Peninsula. D2 was the most prevalent subgenotype in the combined group of Nenets, Komi, and Khants of the northern Yamalo-Nenets Autonomous Region (71%) and in Yakuts (36%) from northeastern Siberia. D3 was the main subgenotype in South Altaians (76%) and Buryats (40%) of southeastern Siberia, and in Chukchi (51%) of the Russian Far East. Subgenotype C2 was found in Taimyr (19%) and Chukchi (27%), while subgenotype A2 was common in Yakuts (33%). In contrast, D2 was dominant (56%) in urban populations of the former western USSR, and D1 (62%) in Central Asian republics and Mongolia. Statistical analysis demonstrated that the studied groups are epidemiologically isolated from each other and might have contracted HBV from different sources during the settlement of Siberia. Full article
(This article belongs to the Special Issue Acute and Chronic Viral Hepatitis)
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18 pages, 2652 KiB  
Article
Floristic Diversity of Jabal Al-Ward, Southwest Tabuk Region, Kingdom of Saudi Arabia
by Ahmed Elkordy, Iman H. Nour, Faten Y. Ellmouni, Najla A. Al Shaye, Dhafer A. Al-Bakre and Ahmed EL-Banhawy
Agronomy 2022, 12(11), 2626; https://doi.org/10.3390/agronomy12112626 - 25 Oct 2022
Cited by 10 | Viewed by 4453
Abstract
Jabal Al-Ward is one of the Hijazi mountains situated between Al-Ulā and Al-Wajh, southwest Tabuk Province, Saudi Arabia’s northwesterly border region. It is considered the highest mountain in this area and is enriched in wildlife. For the first time, the present research aimed [...] Read more.
Jabal Al-Ward is one of the Hijazi mountains situated between Al-Ulā and Al-Wajh, southwest Tabuk Province, Saudi Arabia’s northwesterly border region. It is considered the highest mountain in this area and is enriched in wildlife. For the first time, the present research aimed to investigate the floristic composition, phytogeographical distribution, and plant diversity in Jabal Al-Ward. One hundred ninety-eight species representing 47 plant families have been identified. The Asteraceae, Poaceae, and Fabaceae represented more than a third of the region’s floristic composition. The perennial species (53.5%) were dominant over the annuals (46.46%). This is a prominent feature in Jabal Al-Ward, where the perennial species may be more tolerant of climatic changeability than the annuals. Seven life form categories were found; therophytes (46.46%) showed to be the most common life form. In addition, there were four main phytogeographical groups: Mono-regional, Bi-regional, Pluri-regional, and Worldwide. The Mono-regional and Bi-regional categories had the highest participation, with 38.5% and 37.4%, respectively. Thirty-six species (18.2%) were found to be native to the Saharo-Arabian region. The Saharo-Arabian region was combined with eight more regions, including Saharo-Arabian/Sudano-Zambesian (12.6%), Irano-Turanian/Saharo-Arabian (9.1%), Mediterranean/Saharo-Arabian (5.6%), Irano-Turanian/Mediterranean/Saharo-Arabian (4.5%), Irano-Turanian/Saharo-Arabian/Sudano-Zambesian (2%), Euro-Siberian/Irano-Turanian/Mediterranean/Saharo-Arabian and Saharo-Arabian/Sudanian (1% each), Mediterranean/Saharo-Arabian/Sudano-Zambesian, and Irano-Turanian/Mediterranean/Saharo-Arabian/Saharo-Zambesian (0.5% each). The current study demonstrated the highest species richness compared to earlier research on various locations in Tabuk Province. In future work, the species and endemic richness along elevation gradients should be studied in Jabal Al-Ward. As well as the IUCN status of each taxon, the DNA barcoding of endangered species will be of great significance if applied in the surveyed area. Full article
(This article belongs to the Special Issue Recent Progress in Plant Taxonomy and Floristic Studies)
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5 pages, 1084 KiB  
Proceeding Paper
Climate Trends and Average Increase in Aspen Forests’ Carbon Stock in Siberia According to Forest Inventory Data
by Andrey A. Vais, Valentina V. Popova, Alina A. Andronova, Olga A. Gerasimova, Viktor N. Nemich and Pavel V. Mikhaylov
Environ. Sci. Proc. 2022, 22(1), 8; https://doi.org/10.3390/IECF2022-13079 - 21 Oct 2022
Viewed by 1183
Abstract
Aspen trees (Populus tremula L., 1753) are native to the boreal region of Siberia. These species’ fast growth and ability to regrow from root suckers mean carbon farms can be created using aspen trees for efficient atmospheric carbon sequestration. This paper presents [...] Read more.
Aspen trees (Populus tremula L., 1753) are native to the boreal region of Siberia. These species’ fast growth and ability to regrow from root suckers mean carbon farms can be created using aspen trees for efficient atmospheric carbon sequestration. This paper presents the findings of research focusing on the dynamics of aspen forests’ growth and conditions in a changing climate according to forest inventories conducted in 1972, 1982, 2002 and partially 2021. The research was carried out in aspen stands growing in the Central Siberian subtaiga forest-steppe ecoregion. From 1982 to 2002, there was a steady trend towards increasing growing season temperature sum. At the same time, the amount of precipitation in the same season and period did not exceed the median value. With an increase in the temperature sum in 1982–2002 from 1800 °C to 2100 °C, the average forest carbon stock increased from 0.56 to 1.48 tonnes of carbon per hectare per year. This statement is true for pure aspen forests aged 10 to 30 years. A drastic decrease in the carbon sequestration potential was observed in aspen stands from the age of 40. After 55 years, the average increase in aspen forests’ carbon stock leveled off, and the differences became insignificant. Along with age-related increasing biomass growth rates in aspen forests, natural and pathological dieback led to reductions in resilience and wood loss. Aspen is characterized by rapid early growth rates, which allows aspen forests’ sequestration potential to be used to achieve effective carbon conservation. Full article
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14 pages, 1675 KiB  
Article
Checklist and Distribution of Calanoida (Crustacea: Copepoda) in Kazakhstan (Central Asia)
by Elena Krupa and Moldir Aubakirova
Water 2021, 13(15), 2015; https://doi.org/10.3390/w13152015 - 23 Jul 2021
Cited by 5 | Viewed by 3003
Abstract
This work aims to analyze the zoogeographic distribution of Calanoida in Kazakhstan. Kazakhstan belongs to the Palaearctic region, and its territory is ascribed to the European–Siberian and Nagorno–Asian biogeographical subregions. The European–Siberian subregion includes the Volga–Ural, Irtysh, and Turkestan–Aral provinces. The Balkhash province [...] Read more.
This work aims to analyze the zoogeographic distribution of Calanoida in Kazakhstan. Kazakhstan belongs to the Palaearctic region, and its territory is ascribed to the European–Siberian and Nagorno–Asian biogeographical subregions. The European–Siberian subregion includes the Volga–Ural, Irtysh, and Turkestan–Aral provinces. The Balkhash province belongs to the Nagorno–Asian subregion. Studies of the Calanoida fauna were carried out between 1997 and 2019. For this purpose, 7250 zooplankton samples were taken in 130 different water bodies. Findings of 26 species of Calanoida have been documented. The richest in species composition (20) is the Calanoida fauna of the Irtysh province. Ten Calanoida species have been recorded in the Volga–Ural province, 8 in the Turkestan–Aral province, 7 in the Balkhash province, and 5 in the Ponto–Caspian region. The distribution of the species richness of the order is determined by a complex of climatic factors, including the density of the hydrographic network, a variety of hydrochemical conditions, and accidental acclimatization of species. Far Eastern species (Sinodiaptomus sarsi, Neutrodiaptomus incongruens, Neodiaptomus schmackeri) entered the inland water bodies of Kazakhstan, most likely through the introduction of non-native fish species. The Black Sea species Acartia tonsa and Calanipeda aquaedulcis were introduced into the Caspian Sea with ballast waters. Three autochthonous species (Limnocalanus macrurus, Eurytemora grimmi, Eurytemora minor), formerly inhabiting the Caspian Sea, can now be considered extinct. Acanthodiaptomus denticornis, Arctodiaptomus (R.) salinus, Phyllodiaptomus blanci, and Eudiaptomus graciloides are widespread in the region. Endemic species (Gigantodiaptomus irtyshensis, Arctodiaptomus naurzumensis) and species are new for Kazakhstan (Diaptomus (Chaetodiaptomus) mirus, Eudiaptomus transylvanicus, Arctodiaptomus dentifer, A. (Rh.) ulomskyi were found in small waterbodies; they are known only from single occurrence sites as well as Eurytemora caspica. The last one was described from the northern part of the Caspian Sea, in the coastal zone. Further research into small water bodies that are poorly studied may expand our knowledge of the diversity of Calanoida in Kazakhstan. Calanoida fauna of Kazakhstan was closest to the fauna of countries with a continental climate and most strongly differed from countries with subtropical and Mediterranean types of climates. Full article
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12 pages, 1405 KiB  
Article
Sex-Specific Wolbachia Infection Patterns in Populations of Polygraphus proximus Blandford (Coleoptera; Curculionidae: Scolytinae)
by Roman Bykov, Ivan Kerchev, Marya Demenkova, Artem Ryabinin and Yury Ilinsky
Insects 2020, 11(8), 547; https://doi.org/10.3390/insects11080547 - 18 Aug 2020
Cited by 13 | Viewed by 4290
Abstract
Wolbachia symbionts are maternally inherited bacteria that are widely distributed among Arthropoda hosts. Wolbachia influence their host biology in diverse ways. They may induce reproductive abnormalities, protect hosts against pathogens and parasites, or benefit hosts through metabolic provisioning. The progeny of an infected [...] Read more.
Wolbachia symbionts are maternally inherited bacteria that are widely distributed among Arthropoda hosts. Wolbachia influence their host biology in diverse ways. They may induce reproductive abnormalities, protect hosts against pathogens and parasites, or benefit hosts through metabolic provisioning. The progeny of an infected female are ordinarily infected with Wolbachia; however, Wolbachia have no future in male host progeny because they cannot transmit the symbiont to the next generation. Here, we analyze native and invasive populations of the four-eyed fir bark beetle (Polygraphus proximus) for Wolbachia prevalence and symbiont genetic diversity. This species is a dangerous pest of Siberian fir (Abies sibirica) forests. The native range of P. proximus includes the territories of the Russian Far East, Japan, Korea, and Northeast China, whereas its invasive range includes West Siberia, with further expansion westward. Surprisingly, we revealed a difference in the patterns of Wolbachia prevalence for males and females. Infection rate and Wolbachia titers were higher in females than in males. ST-533, the only haplotype of Wolbachia supergroup B, was associated with a minimum of three out of the five described mitochondrial haplotypes. Full article
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13 pages, 2212 KiB  
Article
Detection of Genomic Regions Associated with Resistance to Stem Rust in Russian Spring Wheat Varieties and Breeding Germplasm
by Irina N. Leonova, Ekaterina S. Skolotneva, Elena A. Orlova, Olga A. Orlovskaya and Elena A. Salina
Int. J. Mol. Sci. 2020, 21(13), 4706; https://doi.org/10.3390/ijms21134706 - 1 Jul 2020
Cited by 17 | Viewed by 3681
Abstract
Stem rust caused by Puccinia graminis f. sp. tritici Eriks. is a dangerous disease of common wheat worldwide. Development and cultivation of the varieties with genetic resistance is one of the most effective and environmentally important ways for protection of wheat against fungal [...] Read more.
Stem rust caused by Puccinia graminis f. sp. tritici Eriks. is a dangerous disease of common wheat worldwide. Development and cultivation of the varieties with genetic resistance is one of the most effective and environmentally important ways for protection of wheat against fungal pathogens. Field phytopathological screening and genome-wide association study (GWAS) were used for assessment of the genetic diversity of a collection of spring wheat genotypes on stem rust resistance loci. The collection consisting of Russian varieties of spring wheat and introgression lines with alien genetic materials was evaluated over three seasons (2016, 2017 and 2018) for resistance to the native population of stem rust specific to the West Siberian region of Russia. The results indicate that most varieties displayed from moderate to high levels of susceptibility to P. graminis; 16% of genotypes had resistance or immune response. In total, 13,006 single-nucleotide polymorphism (SNP) markers obtained from the Infinium 15K array were used to perform genome-wide association analysis. GWAS detected 35 significant marker-trait associations (MTAs) with SNPs located on chromosomes 1A, 2A, 2B, 3B, 5A, 5B, 6A, 7A and 7B. The most significant associations were found on chromosomes 7A and 6A where known resistance genes Sr25 and Sr6Ai = 2 originated from Thinopyrum ssp. are located. Common wheat lines containing introgressed fragments from Triticum timopheevii and Triticum kiharae were found to carry Sr36 gene on 2B chromosome. It has been suggested that the quantitative trait loci (QTL) mapped to the chromosome 5BL may be new loci inherited from the T. timopheevii. It can be inferred that a number of Russian wheat varieties may contain the Sr17 gene, which does not currently provide effective protection against pathogen. This is the first report describing the results of analysis of the genetic factors conferring resistance of Russian spring wheat varieties to stem rust. Full article
(This article belongs to the Special Issue Wheat Breeding through Genetic and Physical Mapping)
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14 pages, 1597 KiB  
Article
Assessing and Broadening Genetic Diversity of Elymus sibiricus Germplasm for the Improvement of Seed Shattering
by Zongyu Zhang, Junchao Zhang, Xuhong Zhao, Wengang Xie and Yanrong Wang
Molecules 2016, 21(7), 869; https://doi.org/10.3390/molecules21070869 - 1 Jul 2016
Cited by 12 | Viewed by 5718
Abstract
Siberian wild rye (Elymus sibiricus L.) is an important native grass in the Qinghai-Tibet Plateau of China. It is difficult to grow for commercial seed production, since seed shattering causes yield losses during harvest. Assessing the genetic diversity and relationships among germplasm [...] Read more.
Siberian wild rye (Elymus sibiricus L.) is an important native grass in the Qinghai-Tibet Plateau of China. It is difficult to grow for commercial seed production, since seed shattering causes yield losses during harvest. Assessing the genetic diversity and relationships among germplasm from its primary distribution area contributes to evaluating the potential for its utilization as a gene pool to improve the desired agronomic traits. In the study, 40 EST-SSR primers were used to assess the genetic diversity and population structure of 36 E. sibiricus accessions with variation of seed shattering. A total of 380 bands were generated, with an average of 9.5 bands per primer. The polymorphic information content (PIC) ranged from 0.23 to 0.50. The percentage of polymorphic bands (P) for the species was 87.11%, suggesting a high degree of genetic diversity. Based on population structure analysis, four groups were formed, similar to results of principal coordinate analysis (PCoA). The molecular variance analysis (AMOVA) revealed the majority of genetic variation occurred within geographical regions (83.40%). Two genotypes from Y1005 and ZhN06 were used to generate seven F1 hybrids. The molecular and morphological diversity analysis of F1 population revealed rich genetic variation and high level of seed shattering variation in F1 population, resulting in significant improvement of the genetic base and desired agronomic traits. Full article
(This article belongs to the Section Molecular Diversity)
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