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Keywords = Sebastiscus marmoratus

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20 pages, 9275 KiB  
Article
Community Dynamics of Fish Larvae in Coastal Zhejiang: Seasonal Variations in Spatiotemporal Distribution and Environmental Driving Factors
by Peng Zhao, Rijin Jiang, Qiqun Li, Rui Yin, Yuelian He, Qingxi Han and Guangjie Fang
Fishes 2025, 10(1), 24; https://doi.org/10.3390/fishes10010024 - 8 Jan 2025
Viewed by 1084
Abstract
The coastal waters of Zhejiang feature a complex aquatic environment and abundant biological resources, creating an ideal habitat for various fish species. However, the systematic monitoring of fish larvae in these offshore waters is limited. This study collected 24,232 fish larvae using large [...] Read more.
The coastal waters of Zhejiang feature a complex aquatic environment and abundant biological resources, creating an ideal habitat for various fish species. However, the systematic monitoring of fish larvae in these offshore waters is limited. This study collected 24,232 fish larvae using large plankton nets during April and November 2022, as well as February and July 2023, and identified 93 species, primarily warm-temperate and warm-water species, with a peak occurrence in summer. The dominant species include Larimichthys croceus, Sebastiscus marmoratus, Lateolabrax japonicus, and Odontamblyopus lacepedii, among others, and these species exhibit frequent seasonal changes. Fish larvae are typically found to be aggregated along estuaries and bays in spring, autumn, and summer, while in winter, they tend to shift towards areas near the boundaries of motor trawler fisheries areas. Our cluster analysis revealed spatial heterogeneity in the community structure, driven by an abundance of dominant and important species. Our Mantel tests and canonical correspondence analysis (CCA) identified seawater temperature and salinity as core drivers of the aggregation and distribution of fish larvae, interacting with factors such as the chlorophyll-a concentration, water turbidity, water depth, and dissolved oxygen. This research provides a scientific basis for the dynamic monitoring of spawning grounds and effective management of fishery resources in Zhejiang’s coastal waters. Full article
(This article belongs to the Special Issue Trophic Ecology of Freshwater and Marine Fish Species)
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13 pages, 2637 KiB  
Article
Effects of Transport Stress (Duration and Density) on the Physiological Conditions of Marbled Rockfish (Sebastiscus marmoratus, Cuvier 1829) Juveniles and Water Quality
by Jiahao Wang, Kaida Xu, Xinyi Chen, Haoxue Wang and Zhe Li
Fishes 2024, 9(12), 474; https://doi.org/10.3390/fishes9120474 - 22 Nov 2024
Cited by 1 | Viewed by 1357
Abstract
Live transportation is a critical component of fish farming and hatchery release. To optimize hatchery-release techniques and improve the survival rate of marbled rockfish (Sebastiscus marmoratus, Cuvier 1829) juveniles, the effects of varying transport durations (2, 4, 6, and 8 h) [...] Read more.
Live transportation is a critical component of fish farming and hatchery release. To optimize hatchery-release techniques and improve the survival rate of marbled rockfish (Sebastiscus marmoratus, Cuvier 1829) juveniles, the effects of varying transport durations (2, 4, 6, and 8 h) and densities (60, 90, 120, and 150 kg m−3) on the physiological indicators of the fish and water quality were investigated under controlled laboratory conditions. We found that as transport duration and density increased, water quality significantly deteriorated, with ammonia nitrogen levels rising and dissolved oxygen content and pH levels decreasing. Physiological indicators including levels of lactate, cortisol, and malondialdehyde and activities of superoxide dismutase, alkaline phosphatase, and glutamate oxaloacetate transaminase notably increased, indicating that the fish experienced heightened stress during transport. Additionally, the mortality rate of juveniles increased significantly with increasing density and transport duration. The high mortality rate might be associated with sustained elevated cortisol levels and liver damage. Our results are helpful for determining the optimal transport conditions for S. marmoratus juveniles and also provide valuable insights for improving transport techniques for other aquatic animal species. Full article
(This article belongs to the Special Issue Biodiversity and Spatial Distribution of Fishes, Second Edition)
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11 pages, 2122 KiB  
Article
Species Composition of Fish Larvae and Juveniles in the Nanji Islands, China
by Xiaodong Wang, Dubin Zhao, Qiang Liu, Tianyu Lu, Junsheng Zhong, Wandong Chen, Shangwei Xie and Shun Chen
Fishes 2024, 9(11), 421; https://doi.org/10.3390/fishes9110421 - 22 Oct 2024
Cited by 1 | Viewed by 999
Abstract
To describe the species composition of fish larvae and juveniles in the Nanji Islands, monthly collection was conducted at 12 stations around the Nanji Islands from March 2023 to February 2024 by using horizontal tow at the surface layer. The fish larvae and [...] Read more.
To describe the species composition of fish larvae and juveniles in the Nanji Islands, monthly collection was conducted at 12 stations around the Nanji Islands from March 2023 to February 2024 by using horizontal tow at the surface layer. The fish larvae and juveniles were collected by a larva net (1.3 m mouth diameter, 0.5 mm mesh aperture). A total of 6446 fish larvae and juveniles were collected, belonging to 59 species and 54 genera in 11 families. Most of them were preflexion larvae (93.31%). Gobiidae, with eight species, was the most diverse family. Based on the index of relative importance (IRI) result, the dominant species was Sebastiscus marmoratus (Cuvier, 1829), accounting for 84.52% of the total number of samples collected. The common species were Stolephorus commersonii Lacepède, 1803; Omobranchus elegans (Steindachner, 1876); Nibea albiflora (Richardson, 1846); Parablennius yatabei (Jordan & Snyder, 1900); Lateolabrax maculatus (McClelland, 1844); and Odontamblyopus lacepediiand (Temminck & Schlegel, 1845). Other species were all rare species. The highest species number was in September (18 species), and the highest density was in December. Only one fish larva was collected in April. Pielou’s evenness index was highest in November, while Margalef’s richness index and Shannon–Wiener diversity were highest in September. The result of cluster analysis showed that the 11 months (except April) could be divided into four groups. The species number, density, and three diversity indexes showed no significant correlation with temperature and salinity. Full article
(This article belongs to the Special Issue Biodiversity and Spatial Distribution of Fishes)
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12 pages, 1389 KiB  
Article
Use of Environmental DNA to Evaluate the Spatial Distribution of False Kelpfish (Sebastiscus marmoratus) in Nearshore Areas of Gouqi Island
by Rijin Jiang, Huibo Hao, Rui Yin, Peng Zhao, Feng Chen, Yongdong Zhou and Xuejun Chai
Fishes 2024, 9(10), 418; https://doi.org/10.3390/fishes9100418 - 19 Oct 2024
Viewed by 1039
Abstract
This study aims to explore the spatial distribution of false kelpfish (Sebastiscus marmoratus) in the mussel farming area, artificial reef areas of Gouqi Island (Shengsi, China), and natural areas using eDNA detection methods. Surface and bottom water samples were collected at [...] Read more.
This study aims to explore the spatial distribution of false kelpfish (Sebastiscus marmoratus) in the mussel farming area, artificial reef areas of Gouqi Island (Shengsi, China), and natural areas using eDNA detection methods. Surface and bottom water samples were collected at 12 stations in November 2022 and April 2023, totaling 52 samples. We used species-specific primers and probes for quantitative PCR (qPCR) detection of Sebastiscus marmoratus eDNA. The eDNA concentrations differed seasonally (p < 0.05) and did not differ (p > 0.05) among the three sampling areas and two water layers. The greatest eDNA concentrations occurred in the surface layer during the spring. Higher concentrations of Sebastiscus marmoratus eDNA were also found in the mussel aquaculture area. Temperature exhibited a significant positive correlation with Sebastiscus marmoratus eDNA concentration (p < 0.05). Additionally, we developed linear equations predicting the relationship between environmental factors and environmental factors, providing a reference for future fishery resource surveys. Full article
(This article belongs to the Special Issue Biodiversity and Spatial Distribution of Fishes)
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17 pages, 2994 KiB  
Article
Disparities in Body Color Adaptability and Ambient Light Color Preference between Wild and Hatchery-Reared Marbled Rockfish (Sebastiscus marmoratus)
by Yulu Qi, Chenhui Liu, Guozi Yuan, Haoyu Guo, Joacim Näslund, Yucheng Wang, Jiangfeng Ru, Yingying Ou, Xuejun Chai and Xiumei Zhang
Animals 2024, 14(11), 1701; https://doi.org/10.3390/ani14111701 - 5 Jun 2024
Cited by 3 | Viewed by 1433
Abstract
Hatchery rearing significantly influences the phenotypic development of fish, with potential adverse effects for the post-release performance of hatchery-reared individuals in natural environments, especially when targeted for stock enhancement. To assess the suitability of releasing hatchery-reared fish, a comprehensive understanding of the phenotypic [...] Read more.
Hatchery rearing significantly influences the phenotypic development of fish, with potential adverse effects for the post-release performance of hatchery-reared individuals in natural environments, especially when targeted for stock enhancement. To assess the suitability of releasing hatchery-reared fish, a comprehensive understanding of the phenotypic effects of captive rearing, through comparisons with their wild conspecifics, is essential. In this study, we investigated the divergence in body coloration between wild and hatchery-reared marbled rockfish Sebastiscus marmoratus. We examined the selection preferences for different light colors and assessed the impact of different ambient light colors on the morphological color-changing ability of juvenile marbled rockfish. Our findings revealed significant differences in body color between wild and hatchery-reared marbled rockfish. The hue and saturation values of wild marbled rockfish were significantly higher than those of their hatchery-reared counterparts, indicative of deeper and more vibrant body coloration in the wild population. Following a ten-day rearing period under various light color environments, the color of wild marbled rockfish remained relatively unchanged. In contrast, hatchery-reared marbled rockfish tended to change their color, albeit not reaching wild-like coloration. Light color preference tests demonstrated that wild juvenile marbled rockfish exhibited a preference for a red-light environment, while hatchery-reared individuals showed a similar but weaker response. Both wild and hatchery-reared marbled rockfish displayed notable negative phototaxis in the presence of yellow and blue ambient light. These results highlight the impact of hatchery rearing conditions on the body color and morphological color-changing ability, and provide insight into light color selection preferences of marbled rockfish. To mitigate the divergence in phenotypic development and produce more wild-like fish for stocking purposes, modifications to the hatchery environment, such as the regulation of ambient light color, should be considered. Full article
(This article belongs to the Section Aquatic Animals)
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13 pages, 5609 KiB  
Article
Does the Artificial Enhancement and Release Activity Affect the Genetic Diversity of Marbled Rockfish Sebastiscus marmoratus in Zhoushan Waters?
by Senping Jiang, Xinyi Chen, Pengfei Li, Haoxue Wang, Jiji Li, Kaida Xu and Yingying Ye
Fishes 2024, 9(5), 161; https://doi.org/10.3390/fishes9050161 - 28 Apr 2024
Viewed by 1435
Abstract
Artificial enhancement and release activity is an important method in the restoration of fishery resources. In order to understand the possible genetic effect of hatchery-released populations on wild populations during the artificial enhancement and release activities of Sebastiscus marmoratus in Zhoushan waters, we [...] Read more.
Artificial enhancement and release activity is an important method in the restoration of fishery resources. In order to understand the possible genetic effect of hatchery-released populations on wild populations during the artificial enhancement and release activities of Sebastiscus marmoratus in Zhoushan waters, we utilized mitochondrial DNA control region sequences to examine the genetic diversity in four S. marmoratus populations, including one farmed population, one released population and two wild populations. A total of 68 haplotypes from 123 individuals were detected, including 3 shared haplotypes. Haplotype diversity ranged from 0.944 to 0.980, with a mean of 0.966. The nucleotide diversity ranged from 0.020 to 0.025, with a mean of 0.022. Analysis of Molecular Variance (AMOVA) indicated that the primary genetic variation occurs within populations and the index of genetic differentiation between populations (FST) among the four populations showed no differentiation. The results indicate that the current artificial enhancement and release has not impacted the S. marmoratus population in Zhoushan waters. Continued long-term monitoring is essential to protect the high-quality germplasm resources of S. marmoratus. Full article
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15 pages, 4904 KiB  
Article
Hsp70 Gene Family in Sebastiscus marmoratus: The Genome-Wide Identification and Transcriptome Analysis under Thermal Stress
by Xiaolu Han, Shihuai Jin, Chenyan Shou and Zhiqiang Han
Genes 2023, 14(9), 1779; https://doi.org/10.3390/genes14091779 - 9 Sep 2023
Cited by 10 | Viewed by 2090
Abstract
Heat shock protein 70 kDa (Hsp70) is a highly conserved heat stress protein that is important in biotic processes and responses to abiotic stress. Hsp70 genes may be important in Sebastiscus marmoratus, for it is a kind of nearshore reef fish, and habitat [...] Read more.
Heat shock protein 70 kDa (Hsp70) is a highly conserved heat stress protein that is important in biotic processes and responses to abiotic stress. Hsp70 genes may be important in Sebastiscus marmoratus, for it is a kind of nearshore reef fish, and habitat temperature change is more drastic during development. However, genome-wide identification and expression analysis in the Hsp70 gene family of S. marmoratus are still lacking. Here, a total of 15 Hsp70 genes in the genome of S. marmoratus are identified, and their expression patterns were investigated using transcriptomic data from thermal stress experiments. The expansion and gene duplication events of Hsp70 genes from the Hspa4, Hspa8, and Hspa12a subfamilies in S. marmoratus are revealed by phylogenetic analysis. qRT-PCR expression patterns demonstrated that seven Hsp70 genes were significantly up-regulated and none were significantly down-regulated after heat treatment. Only the hsp70 gene was significantly up-regulated after cold treatment. The selection test further showed a purifying selection on the duplicated gene pairs, suggesting that these genes underwent subfunctionalization. Our results add novel insight to aquaculture and biological research on S. marmoratus, providing important information on how Hsp70 genes are regulated in Scorpaeniformes under thermal stress. Full article
(This article belongs to the Special Issue Genetic Improvement of Aquatic Species)
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17 pages, 3327 KiB  
Article
Transcriptome Analysis of Marbled Rockfish Sebastiscus marmoratus under Salinity Stress
by Zhiqi He, Chenyan Shou and Zhiqiang Han
Animals 2023, 13(3), 400; https://doi.org/10.3390/ani13030400 - 24 Jan 2023
Cited by 6 | Viewed by 2621
Abstract
The marbled rockfish, Sebastiscus marmoratus, belongs to the euryhaline fish and is an oviparous scleractinian fish. There are few studies on the adaptation mechanism, functional genes, and related pathways of S. marmoratus and salinity. The results showed that a total of 72.1 [...] Read more.
The marbled rockfish, Sebastiscus marmoratus, belongs to the euryhaline fish and is an oviparous scleractinian fish. There are few studies on the adaptation mechanism, functional genes, and related pathways of S. marmoratus and salinity. The results showed that a total of 72.1 GB of clean reads were obtained and all clean reads annotated a total of 25,278 Unigenes, of which 2,160 were novel genes. Compared to 20‰, 479 and 520 differential genes were obtained for 35‰ and 10‰, respectively. Gene ontology (GO) enrichment analysis revealed significant enrichment in protein binding, ion binding, ATP binding, and catalytic activity. Kyoto Encyclopedia of Genes and Genomes (KEGG) showed that differentially expressed genes significantly expressed under salinity stress were mainly involved in the pathways of the cytochrome P450 metabolism of xenobiotics, tryptophan metabolism, cellular senescence, and calcium signaling pathways. Among them, pik3r6b, cPLA2γ-like, and WSB1 were differentially expressed in all three groups, and they were associated with apoptosis, inflammation, DNA damage, immune regulation, and other physiological processes. Six differentially expressed genes were randomly selected for qRT-PCR validation, and the results showed that the transcriptomic data were of high confidence. Full article
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10 pages, 2150 KiB  
Article
Differences in Light Attenuation Patterns of Sargassum horneri Beds and Their Influences on Sebastiscus marmoratus Juveniles: A Case Study of Gouqi Island, Ma’an Archipelago, China
by Min Xu, Yi Zhang, Linlin Yang, Yunlin Zhang, Qi Zhao, Takayoshi Otaki, Jun Li and Teruhisa Komatsu
Water 2022, 14(21), 3531; https://doi.org/10.3390/w14213531 - 3 Nov 2022
Cited by 1 | Viewed by 1574
Abstract
Sargassum beds ensure sustainable environmental, social, and economic benefits in the coastal areas around the world. They can provide shelter ground to different species of fish juveniles. To investigate these, we conducted field surveys in a peaking growth period of Sargassum horneri from [...] Read more.
Sargassum beds ensure sustainable environmental, social, and economic benefits in the coastal areas around the world. They can provide shelter ground to different species of fish juveniles. To investigate these, we conducted field surveys in a peaking growth period of Sargassum horneri from May to June 2010 to evaluate them on Gouqi Island, Ma’an archipelago, China. The study indicated that the light attenuation rate inside the S. horneri beds was higher than that in the surrounding areas. The light attenuation rate was highest in Ganxie, the second highest in Huangshidong, and the lowest in Houtouwan. We found that the average length of Sebastiscus marmoratus corresponded to the average height of S. horneri. This study improves our understanding of the function of sheltering grounds provided by Sargassum beds. Additionally, this study is relevant to the development of the regulations and directives to ensure the sustainable exploitations and protection of wild seaweeds and the accompanying organisms resources. Full article
(This article belongs to the Section Biodiversity and Functionality of Aquatic Ecosystems)
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17 pages, 3838 KiB  
Article
Genome-Wide Identification, Characterization and Expression Analysis of Toll-like Receptors in Marbled Rockfish (Sebastiscus marmoratus)
by Yuan Zhang, Xiaoyan Wang, Fei Han and Tianxiang Gao
Int. J. Mol. Sci. 2022, 23(19), 11357; https://doi.org/10.3390/ijms231911357 - 26 Sep 2022
Cited by 2 | Viewed by 2058
Abstract
Toll-like receptor (TLR) is a cluster of type I transmembrane proteins that plays a role in innate immunity. Based on the marbled rockfish (Sebastiscus marmoratus) genome database, this study used bioinformatics methods to identify and analyze its TLR gene family members. [...] Read more.
Toll-like receptor (TLR) is a cluster of type I transmembrane proteins that plays a role in innate immunity. Based on the marbled rockfish (Sebastiscus marmoratus) genome database, this study used bioinformatics methods to identify and analyze its TLR gene family members. The results showed that there were 11 TLR gene family members in Sebastiscus marmoratus (SmaTLR), which could be divided into five different subfamilies. The number of amino acids encoded by the Smatlr genes ranged from 637 to 1206. The physicochemical properties of the encoded proteins of different members were also computed. The results of protein structure prediction, phylogenetic relation, and motif analysis showed that the structure and function of the SmaTLRs were relatively conserved. Quantitative Real-Time PCR (qRT-PCR) analysis revealed the expression patterns of SmaTLRs in the gill, liver, spleen, head kidney, kidney, and intestine. SmaTLRs were widely detected in the tested tissues, and they tended to be expressed higher in immune-related tissues. After polyriboinosinic polyribocytidylic acid (poly(I:C)) challenge, SmaTLR14, SmaTLR3, SmaTLR5S, SmaTLR7, and SmaTLR22 were significantly upregulated in the spleen or liver. The results of this study will help to understand the status of TLR gene family members of marbled rockfish and provide a basis for further study of the functional analysis of this gene family. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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11 pages, 3447 KiB  
Article
Comprehensive Draft Genome Analyses of Three Rockfishes (Scorpaeniformes, Sebastiscus) via Genome Survey Sequencing
by Chenghao Jia, Tianyan Yang, Takashi Yanagimoto and Tianxiang Gao
Curr. Issues Mol. Biol. 2021, 43(3), 2048-2058; https://doi.org/10.3390/cimb43030141 - 18 Nov 2021
Cited by 6 | Viewed by 3309
Abstract
Sebastiscus species, marine rockfishes, are of essential economic value. However, the genomic data of this genus is lacking and incomplete. Here, whole genome sequencing of all species of Sebastiscus was conducted to provide fundamental genomic information. The genome sizes were estimated to be [...] Read more.
Sebastiscus species, marine rockfishes, are of essential economic value. However, the genomic data of this genus is lacking and incomplete. Here, whole genome sequencing of all species of Sebastiscus was conducted to provide fundamental genomic information. The genome sizes were estimated to be 802.49 Mb (S. albofasciatus), 786.79 Mb (S. tertius), and 776.00 Mb (S. marmoratus) by using k-mer analyses. The draft genome sequences were initially assembled, and genome-wide microsatellite motifs were identified. The heterozygosity, repeat ratios, and numbers of microsatellite motifs all suggested possibly that S. tertius is more closely related to S. albofasciatus than S. marmoratus at the genetic level. Moreover, the complete mitochondrial genome sequences were assembled from the whole genome data and the phylogenetic analyses genetically supported the validation of Sebastiscus species. This study provides an important genome resource for further studies of Sebastiscus species. Full article
(This article belongs to the Section Bioinformatics and Systems Biology)
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