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Keywords = ICUC

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15 pages, 2284 KB  
Article
DPA4 Suppresses Adventitious Root Formation via Transcriptional Regulation of CUC2 and ULT1, Decreasing Auxin Biosynthesis in Arabidopsis Leaf Explants
by Yucai Zheng, Qian Xing, Xuemei Liu and Ralf Müller-Xing
Int. J. Mol. Sci. 2025, 26(23), 11336; https://doi.org/10.3390/ijms262311336 - 24 Nov 2025
Viewed by 363
Abstract
Plants have the capacity to form adventitious roots (ARs) from detached aerial organs, a process known as de novo root regeneration (DNRR). In Arabidopsis, wounding signals rapidly induce in leaf explants the expression of genes encoding enzymes of auxin biosynthesis, resulting in elevated [...] Read more.
Plants have the capacity to form adventitious roots (ARs) from detached aerial organs, a process known as de novo root regeneration (DNRR). In Arabidopsis, wounding signals rapidly induce in leaf explants the expression of genes encoding enzymes of auxin biosynthesis, resulting in elevated auxin levels and facilitating AR formation. Here, we report that DEVELOPMENT-RELATED POLYCOMB TARGET IN THE APEX 4 (DPA4/NGAL3), a well-known regulator in seed size and leaf margin development, and a repressor of CUP-SHAPED COTYLEDON 2 (CUC2), inhibits AR formation in detached leaves. Leaf explants of dpa4-2 and cuc2-1D mutants displayed both elevated CUC2 mRNA levels and increased rooting rates. We observed reduced expression of ULTRAPETALA1 (ULT1), a negative regulator of DNRR, while the auxin biosynthesis genes ASA1, YUC4, and YUC9 were upregulated in both mutants. Through pharmacological inhibition of YUCCA-mediated auxin biogenesis, we obtained evidence that the enhanced AR formation in both mutants is at least partially a result of increased auxin production. Genetic analysis of dpa4-2 cuc2-1D double mutants indicates that similar mechanisms promote DNRR in both mutants. In summary, our study suggests that DPA4 suppresses AR formation likely by repression of CUC2 and activation of ULT1, which, in turn, suppresses endogenous auxin biogenesis and DNRR. Full article
(This article belongs to the Section Molecular Plant Sciences)
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5 pages, 231 KB  
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Homogeneity in Surgical Series: Image Reporting to Improve Evidence
by Pietro Regazzoni, Simon Lambert, Jesse B. Jupiter, Norbert Südkamp, Wen-Chih Liu and Alberto A. Fernández Dell’Oca
J. Clin. Med. 2023, 12(4), 1583; https://doi.org/10.3390/jcm12041583 - 16 Feb 2023
Cited by 5 | Viewed by 1551
Abstract
Good clinical practice guidelines are based on randomized controlled trials or clinical series; however, technical performance bias among surgical trials is under-assessed. The heterogeneity of technical performance within different treatment groups diminishes the level of evidence. Surgeon variability with different levels of experience—technical [...] Read more.
Good clinical practice guidelines are based on randomized controlled trials or clinical series; however, technical performance bias among surgical trials is under-assessed. The heterogeneity of technical performance within different treatment groups diminishes the level of evidence. Surgeon variability with different levels of experience—technical performance levels even after certification—influences surgical outcomes, especially in complex procedures. Technical performance quality correlates with the outcomes and costs and should be measured by image or video-photographic documentation of the surgeon’s view field during the procedures. Such consecutive, completely documented, unedited observational data—in the form of intra-operative images and a complete set of eventual radiological images—improve the surgical series’ homogeneity. Thereby, they might reflect reality and contribute towards making necessary changes for evidence-based surgery. Full article
(This article belongs to the Special Issue Advances in Trauma and Orthopedic Surgery)
3 pages, 187 KB  
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Complete Intra-Operative Image Data Including 3D X-rays: A New Format for Surgical Papers Needed?
by Pietro Regazzoni, Wen-Chih Liu, Jesse B. Jupiter and Alberto A. Fernandez dell’Oca
J. Clin. Med. 2022, 11(23), 7039; https://doi.org/10.3390/jcm11237039 - 28 Nov 2022
Cited by 5 | Viewed by 1982
Abstract
Intra-operative 3D X-rays have been confirmed to decrease revision rates and improve optimal screw placement in complex fractures of the distal radius. Compared with traditional surgical publications, another advantage of whole intraoperative clinical imaging can be presented in electronic databases, e.g., the ICUC [...] Read more.
Intra-operative 3D X-rays have been confirmed to decrease revision rates and improve optimal screw placement in complex fractures of the distal radius. Compared with traditional surgical publications, another advantage of whole intraoperative clinical imaging can be presented in electronic databases, e.g., the ICUC working group, through a link without size limitation. The detail of complete intra-operative image dataset includes essential technical details which can be analyzed secondarily for costs and complications, considering the technical performance bias. Furthermore, the new format complies with reading/learning preferences of young surgeons and allows secondary work-up by artificial intelligence. Intra-operative 3D X-ray is a new approach for better surgical outcomes, economic benefit, and educational purposes. Full article
(This article belongs to the Special Issue Advance in Orthopedic Trauma Surgery)
13 pages, 2180 KB  
Article
Quality Control of Bacterial Extracellular Vesicles with Total Protein Content Assay, Nanoparticles Tracking Analysis, and Capillary Electrophoresis
by Aleksandra Steć, Joanna Jońca, Krzysztof Waleron, Małgorzata Waleron, Agata Płoska, Leszek Kalinowski, Bartosz Wielgomas and Szymon Dziomba
Int. J. Mol. Sci. 2022, 23(8), 4347; https://doi.org/10.3390/ijms23084347 - 14 Apr 2022
Cited by 20 | Viewed by 5410
Abstract
Extracellular vesicles (EVs) were isolated from Pectobacterium zantedeschiae culturing media using direct ultracentrifugation (UC), iodixanol cushion ultracentrifugation (ICUC), and iodixanol density gradient ultracentrifugation (IDGUC) techniques. The isolates were characterized with total protein content assay (bicinchoninic acid assay, BCA), nanoparticles tracking analysis (NTA), and [...] Read more.
Extracellular vesicles (EVs) were isolated from Pectobacterium zantedeschiae culturing media using direct ultracentrifugation (UC), iodixanol cushion ultracentrifugation (ICUC), and iodixanol density gradient ultracentrifugation (IDGUC) techniques. The isolates were characterized with total protein content assay (bicinchoninic acid assay, BCA), nanoparticles tracking analysis (NTA), and capillary electrophoresis (CE). A satisfactory correlation (R2 > 0.94) between quantitative results obtained with BCA, NTA and CE was achieved only for isolates obtained with the IDGUC. The correlation between protein content and CE was proved to be related to the isolates’ purity. The NTA was found unable to provide reliable information on EVs quantity in samples isolated with UC and ICUC, due to the co-isolated particulate impurities. Moreover, the work reports polysaccharides, used as culturing media components, as a potential source of bias of quantitation with total protein content assay and NTA. The study demonstrates the advantageous selectivity of CE in quality control of EVs and its ability to differentiate subpopulations of EVs of Pectobacterium. Full article
(This article belongs to the Special Issue Extracellular Vesicles in Microbes, Pathogens and Infectious Diseases)
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