Search Results (7)

Lactarius hatsudake Tanaka is a mycorrhizal edible mushroom with an appealing taste and rich nutrition. It is also a significant food and has medicinal value. In this study, the plantation of L. hatsudake during the harvest period was taken as the research object, and this article explores which bacteria in the soil contribute to the production and growth of L. hatsudake. The soil of the control (CK) and the soil of the mushroom-producing area [including the soil of the base of the mushroom (JT) and the mycorrhizal root soil (JG)] was collected in the plantation. The three sites’ bacterial community structure and soil diversity were analyzed using high-throughput sequencing technology, and a molecular ecological network was built. Soil bacteria in the L. hatsudake plantation had 28 tribes, 74 classes, 161 orders, 264 families, 498 genera, and 546 species. The dominant phyla were Proteobacteria and Acidobacteria, and the dominant genera were Burkholderia_Caballeronia_Paraburkholderia, Acidothermus, Bradyrhizobium, Candidatus_Xiphinematobacter, and Granulicella. The α-diversity of soil bacteria in JT was significantly lower than that in JG and CK, and the β-diversity in JT samples was significantly different from that in JG and CK samples. The size and complexity of the constructed network were smaller in JT samples than in JG and CK samples, and the stability was higher in JT samples than in JG and CK samples. The positive correlation between species in JT samples was dominant. The potential mycorrhizal helper bacteria (MHB) species of L. hatsudake was determined using correlation and differential group analysis. The results support future research on mycorrhizal synthesis, plantation management, and the function of microorganisms in the soil rhizosphere of L. hatsudake. Full article

This study focused on examining the early stages of tea cultivation (1, 3, and 5 years) in mountainous tea plantations. It specifically aimed to investigate the changes in soil micro-ecology at different locations (inter-row, terrace surfaces, and terrace walls). It was revealed that as tea tree cultivation progressed over the years, bacterial diversity and co-occurrence networks annually decreased in different locations. The results of soil physicochemical index analysis showed that the soil’s available nutrients and the activities of cellulase and protease increased. Furthermore, the amplitude of variation of these indexes in the inter-row soil was significantly higher than that on the terrace surfaces and the terrace walls (p < 0.05). Alterations occurred in the soil microbial community structure, with an enrichment of bacterial genera such as Sinomonas, Granulicella, and Sphingomonas, as well as fungal genera such as Trichoderma, Penicillium, and Talaromyces; an increase in the proportion of plant pathogenic fungi (Cladosporium, Fusarium, and Curvularia) was observed in the inter-row soil. The results of soil microbial function prediction showed that nitrification and nitrogen fixation decreased, but denitrification increased (p < 0.05). In conclusion, cultivating tea trees in mountainous terraced plantations significantly impacted the soil microbial community, accelerated the metabolism of soil organic matter, disrupted soil nitrogen cycling functions, and increased the presence of plant pathogenic fungal pathogens. Moreover, the changes in the structure and functions of the soil microbial community demonstrate a spatial distance effect across different terrace locations. Full article

Pruning is an agronomic practice that contributes to tea tree yield during cultivation, but little is known about how pruning improves yield through shifting bacterial communities in rhizosphere soil. Therefore, Meizhan tea (Camellia sinensis) was used as the research object to analyze the effect of unpruning and pruning on the growth and rhizosphere soil physicochemical indexes of the tea tree, and sequencing technology was used to obtain the diversity of soil bacterial communities. The results showed that leaf area, hundred bud weight and yield of pruned tea trees increased by 1.32, 1.40, and 1.84 times, respectively, and pH and available N, available P, and available K contents increased by 1.10, 1.07, 1.30, and 1.07 times, respectively, compared with unpruned treatment, while total N, total P, and total K contents decreased by 1.20, 1.37, and 1.13 times, respectively. Analysis of the bacterial community structure showed that the key differential bacteria between pruned and unpruned tea trees were Candidatus Solibacter, Acidibacter, Rhizomicrobium, Bryobacter, Solanum torvum, Mizugakiibacter, Nitrospira, Sphingomonas, and Granulicella. Among them, the bacterial abundance of Candidatus Solibacter, Bryobacter, and Nitrospira showed an upward trend and the rest showed a downward trend after pruned treatment. Interaction network analysis showed that the correlation between the total key genera of microorganisms and organic matter, total N, total K, and total P content in rhizosphere soil did not reach a significant level, whereas the correlation with soil available N, available K, available P, pH, and tea tree growth indexes were all positively and significantly correlated. It can be seen that pruning changed the structure of the rhizosphere soil microbial community of tea trees, promoted soil nutrient transformation, increased the content of soil available nutrients, and promoted the growth of tea tree. Full article

Granulicella tundricola hydroxynitrile lyase (GtHNL) catalyses the synthesis of chiral (R)-cyanohydrins and (R)-β-nitro alcohols. The triple variant GtHNL-A40H/V42T/Q110H (GtHNL-3V) was immobilised on Celite R-633 and used in monophasic MTBE saturated with 100 mM KPi buffer pH 7 for the synthesis of (R)-2-nitro-1-phenylethanol (NPE) in batch and continuous flow systems. Nitromethane was used as a nucleophile. A total of 82% of (R)-NPE and excellent enantioselectivity (>99%) were achieved in the batch system after 24 h of reaction time. GtHNL-3V on Celite R-633 was successfully recycled five times. During more recycling steps a significant decrease in yield was observed while the enantioselectivity remained excellent over eight cycles. The use of a flow system enabled the continuous synthesis of (R)-NPE. A total of 15% formation of (R)-NPE was reached using a flow rate of 0.1 mL min⁻¹; unfortunately, the enzyme was not stable, and the yield decreased to 4% after 4 h on stream. A similar yield was observed during 15 h at a rate of 0.01 mL min⁻¹. Surprisingly the use of a continuous flow system did not facilitate the process intensification. In fact, the batch system displayed a space-time-yield (STY/mg_enzyme) of 0.10 g L⁻¹ h⁻¹ mg_enzyme⁻¹ whereas the flow system displayed 0.02 and 0.003 g L⁻¹ h⁻¹ mg_enzyme⁻¹ at 0.1 and 0.01 mL min⁻¹, respectively. In general, the addition of 1 M nitromethane potentially changed the polarity of the reaction mixture affecting the stability of Celite-GtHNL-3V. The nature of the batch system maintained the reaction conditions better than the flow system. The higher yield and productivity observed for the batch system show that it is a superior system for the synthesis of (R)-NPE compared with the flow approach. Full article

The east and southeast rim of Harz mountains (Germany) are marked by a high density of former copper mining places dating back from the late 20th century to the middle age. A set of 18 soil samples from pre- and early industrial mining places and one sample from an industrial mine dump have been selected for investigation by 16S rRNA and compared with six samples from non-mining areas. Although most of the soil samples from the old mines show pH values around 7, RNA profiling reflects many operational taxonomical units (OTUs) belonging to acidophilic genera. For some of these OTUs, similarities were found with their abundances in the comparative samples, while others show significant differences. In addition to pH-dependent bacteria, thermophilic, psychrophilic, and halophilic types were observed. Among these OTUs, several DNA sequences are related to bacteria which are reported to show the ability to metabolize special substrates. Some OTUs absent in comparative samples from limestone substrates, among them Thaumarchaeota were present in the soil group from ancient mines with pH > 7. In contrast, acidophilic types have been found in a sample from a copper slag deposit, e.g., the polymer degrading bacterium Granulicella and Acidicaldus, which is thermophilic, too. Soil samples of the group of pre-industrial mines supplied some less abundant, interesting OTUs as the polymer-degrading Povalibacter and the halophilic Lewinella and Halobacteriovorax. A particularly high number of bacteria (OTUs) which had not been detected in other samples were found at an industrial copper mine dump, among them many halophilic and psychrophilic types. In summary, the results show that soil samples from the ancient copper mining places contain soil bacterial communities that could be a promising source in the search for microorganisms with valuable metabolic capabilities. Full article

The phylum Acidobacteria is widely distributed in soils, but few representatives have been cultured. In general, Acidobacteria are oligotrophs and exhibit slow growth under laboratory conditions. We sequenced the genome of Granulicella sp. WH15, a strain obtained from decaying wood, and determined the bacterial transcriptome and proteome under growth in poor medium with a low or high concentration of sugar. We detected the presence of 217 carbohydrate-associated enzymes in the genome of strain WH15. Integrated analysis of the transcriptomic and proteomic profiles showed that high sugar triggered a stress response. As part of this response, transcripts related to cell wall stress, such as sigma factor σW and toxin–antitoxin (TA) systems, were upregulated, as were several proteins involved in detoxification and repair, including MdtA and OprM. KEGG metabolic pathway analysis indicated the repression of carbon metabolism (especially the pentose phosphate pathway) and the reduction of protein synthesis, carbohydrate metabolism, and cell division, suggesting the arrest of cell activity and growth. In summary, the stress response of Granulicella sp. WH15 induced by the presence of a high sugar concentration in the medium resulted in the intensification of secretion functions to eliminate toxic compounds and the reallocation of resources to cell maintenance instead of growth. Full article

Despite that diclofenac has been embodied to the European watch list of priority substances of concern, studies on diclofenac biodegradation are limited and the diversity of diclofenac-degrading microbiota remains unknown. In this work, an immobilized cell biofilter was constructed and operated to evaluate its effectiveness to depurate high strength diclofenac wastewater and to identify the diclofenac-degrading community accommodated in activated sludge by employing high-throughput sequencing techniques. After a two-month adaptation period, biofilter removal efficiencies reached values as high as 97.63 ± 0.62%, whereas utilization of diclofenac in the immobilized cell biofilter led to a drastic pH decrease. Based on Illumina sequencing, the major bacterial taxa identified in the immobilized cell biofilter were members of the species Granulicella pectinivorans and Rhodanobacter terrae, followed by members of the species Castellaniella denitrificans, Parvibaculum lavamentivorans, Bordetella petrii, Bryocella elongata and Rhodopseudomonas palustris. The ability of such taxa to utilize a wide range of carbon sources and to effectively adapt under acidic conditions seemed to be the main parameters, which favored their prevalence in the immobilized cell biofilter. In addition, Wickerhamiella was the predominant fungal taxon in the immobilized cell biofilter, which appears to be actively involved in diclofenac degradation in activated sludge systems. Full article