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Keywords = Cutaneotrichosporon oleaginosus

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19 pages, 3161 KB  
Article
Pressure-Dependent Microbial Oil Production with Cutaneotrichosporon oleaginosus Converting Lignocellulosic Hydrolysate
by Fabian Herrmann, Nila Kazemian, Emelie Petzel and Dirk Weuster-Botz
Processes 2026, 14(2), 228; https://doi.org/10.3390/pr14020228 - 8 Jan 2026
Viewed by 379
Abstract
Microbial lipid production from renewable carbon sources, particularly lignocellulosic hydrolysates, is a promising alternative to plant-derived oils and fats for food applications, as it can minimize the land use by utilizing agricultural wastes and byproducts from food production. In this context, a standard [...] Read more.
Microbial lipid production from renewable carbon sources, particularly lignocellulosic hydrolysates, is a promising alternative to plant-derived oils and fats for food applications, as it can minimize the land use by utilizing agricultural wastes and byproducts from food production. In this context, a standard approach to prevent oxygen limitation at reduced air gassing rates during long-term aerobic microbial processes is to operate bioreactors at increased pressure for elevating the gas solubility in the fermentation broth. This study investigates the effect of absolute pressures of up to 2.5 bar on the conversion of the carbon sources (glucose, xylose, and acetate), growth, and lipid biosynthesis by Cutaneotrichosporon oleaginosus converting a synthetic nutrient-rich lignocellulosic hydrolysate at low air gassing rates of 0.1 vessel volume per minute (vvm). Increasing pressure delayed xylose uptake, reduced acetic acid consumption, and reduced biomass formation. Lipid accumulation decreased with increasing pressure, except for fermentations at 1.5 bar, which achieved a maximum lipid content of 83.6% (±1.6, w/w) (weight per weight in %). At an absolute pressure of 1.5 bar, a lipid yield from glucose, xylose, and acetic acid of 38% (w/w) was reached after 6 days of fermentation. The pressure sensitivity of C. oleaginosus may pose challenges on an industrial scale due to the dynamic changes in pressure when the yeast cells pass through the bioreactor. Increasing liquid heights in full-scale bioreactors will result in increased hydrostatic pressures at the bottom, substantially reducing lipid yields, e.g., to only 23% (w/w) at 2.0–2.5 bar, as shown in this study. However, further scale-up studies with dynamic pressure regimes (1–2.5 bar) may help to evaluate scale-up feasibility. Full article
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16 pages, 1414 KB  
Communication
Steering Fatty Acid Composition of Yeast Microbial Oil via Genetic Modification and Bioprocess Adjustment
by Zeynep Efsun Duman-Özdamar, Edoardo Saccenti, Rosan van der Glas, Vitor A. P. Martins dos Santos, Jeroen Hugenholtz and Maria Suarez-Diez
Fermentation 2026, 12(1), 8; https://doi.org/10.3390/fermentation12010008 - 21 Dec 2025
Viewed by 699
Abstract
The increasing demand for palm oil has drastic effects on the ecosystem, as its production is not sustainable. To that end, developing a sustainable alternative to fatty acids and oils is urgent and of utmost interest. Oils produced by oleaginous yeasts present a [...] Read more.
The increasing demand for palm oil has drastic effects on the ecosystem, as its production is not sustainable. To that end, developing a sustainable alternative to fatty acids and oils is urgent and of utmost interest. Oils produced by oleaginous yeasts present a promising solution, particularly because the fatty acid profile of the oil produced by these yeasts is comparable to that of plant-based oils and fats. The fatty acid composition of the oil determines its physiological properties, thereby determining its potential applications. Accordingly, the production of microbial oil with an optimal composition profile for a specific application is of great importance. In this study, we evaluated the variation that occurred in fatty acid composition due to different cultivation parameters (temperature, C/N ratio, carbon, and nitrogen sources) and applied genetic modifications to improve the lipid accumulation of Cutaneotrichosporon oleaginosus and Yarrowia lipolytica. We showed that specific fatty acid profiles associated with a particular application can be obtained by carefully selecting the microorganism and cultivation conditions. Full article
(This article belongs to the Special Issue Microbial Cell Factories for the Production of Functional Compounds)
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21 pages, 3446 KB  
Article
Optimizing the Enzymatic Hydrolysis of Microchloropsis salina Biomass for Single-Cell Oil Production
by Felix Melcher, Max Schneider, Michael Paper, Marion Ringel, Daniel Garbe and Thomas Brück
Biomass 2025, 5(3), 56; https://doi.org/10.3390/biomass5030056 - 17 Sep 2025
Viewed by 1308
Abstract
There is an increasing industrial demand for sustainable resources for lipid-based biofuels and platform chemical production. A promising, CO2-efficient resource is autotrophically cultivated microalgae, either for direct single-cell oil (SCO) production or as a biomass substrate for fermentative SCO production via [...] Read more.
There is an increasing industrial demand for sustainable resources for lipid-based biofuels and platform chemical production. A promising, CO2-efficient resource is autotrophically cultivated microalgae, either for direct single-cell oil (SCO) production or as a biomass substrate for fermentative SCO production via organisms like yeasts. Regarding the latter, chemical biomass hydrolysis typically results in high sugar yield and high salt concentrations due to the required neutralization prior to fermentation. In contrast, enzymatic hydrolysis is often lacking in mass efficiency. In this study, the enzymatic hydrolysis of both nutrient-replete and lipid-rich autotrophic Microchloropsis salina biomass was optimized, testing different pre-treatments and enzyme activities. Hereby, the protease treatment to weaken the cell wall integrity and the dosing of the Cellic CTec3 was identified to have the highest effect on hydrolysis efficiency. Sugar yields of 63% (nutrient-replete) and almost 100% (lipid-rich) could be achieved. The process was successfully scaled-up in mini bioreactors at a 250 mL scale. The resulting hydrolysate of the lipid-rich biomass was tested as a substrate of the oleaginous yeast Cutaneotrichosporon oleaginosus in a consumption-based acetic acid fed-batch setup. It outperformed both the model substrate and the glucose control, demonstrating the high potential of the hydrolysate as feedstock for yeast oil production. The presented sequential and circular SCO-producing value chain highlights the potential for mass- and space–time-efficient biofuel production, combining the autotrophic cultivation of oleaginous algae with decoupled yeast oil fermentation for the first time. Full article
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25 pages, 2216 KB  
Review
Sustainable Lipid Production with Cutaneotrichosporon oleaginosus: Insights into Metabolism, Feedstock Valorization and Bioprocess Development
by Marion Ringel, Michael Paper, Marieke Willing, Max Schneider, Felix Melcher, Nikolaus I. Stellner and Thomas Brück
Microorganisms 2025, 13(9), 1988; https://doi.org/10.3390/microorganisms13091988 - 26 Aug 2025
Cited by 4 | Viewed by 2131
Abstract
The production of microbial lipids through single-cell oil (SCO) technologies has gained increasing attention as a sustainable alternative source of lipids for industrial applications. This development is driven by the limitations of plant-based oils, particularly their competition with food production and demand for [...] Read more.
The production of microbial lipids through single-cell oil (SCO) technologies has gained increasing attention as a sustainable alternative source of lipids for industrial applications. This development is driven by the limitations of plant-based oils, particularly their competition with food production and demand for arable land. Cutaneotrichosporon oleaginosus has been recognized as one of the most promising oleaginous microorganisms for efficient SCO production. To improve sustainability and economic viability, it is vital to understand the underlying metabolic mechanism of SCO production as well as needs and limitations in bioprocess engineering for the efficient utilization of carbon sources derived from diverse agricultural and industrial side streams. This review focuses on recent studies exploring the potential of SCO production through C. oleaginosus in a bioprocess context through the application of low-cost agro-industrial by-products as alternative carbon sources aiming to supply lipid raw materials for various industrial applications. C. oleaginosus can grow on different agro-industrial waste-derived substrates, including lignocellulosic biomass hydrolysates, biodiesel production process side streams, chitin-based by-products, cheese whey permeates, fungal biomass hydrolysates and algal biomass hydrolysates. These substrates contain various carbon sources, such as glucose, galactose, mannose, xylose, lactose, N-acetyl-glucosamine and glycerol, facilitating efficient SCO production. Additionally, the specific composition of SCO sourced from C. oleaginosus, including the presence of functional compounds like squalene and prevalent long-chain unsaturated fatty acids in its fatty acid profile, make it an ideal option to be used as a raw material in cosmetics, biofuel and food products. This comprehensive overview aims to shed light on the potential of C. oleaginosus in leveraging carbon source alternatives for sustainable SCO production for multifaceted, industrial applications of SCO. Full article
(This article belongs to the Special Issue Advances in Microbial Cell Factories, 3rd Edition)
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19 pages, 3023 KB  
Article
Two Cascade Reactions with Oleate Hydratases for the Sustainable Biosynthesis of Fatty Acid-Derived Fine Chemicals
by Sophia A. Prem, Martina Haack, Felix Melcher, Marion Ringel, Daniel Garbe and Thomas Brück
Catalysts 2023, 13(9), 1236; https://doi.org/10.3390/catal13091236 - 25 Aug 2023
Cited by 5 | Viewed by 2723
Abstract
Oleate hydratases (OHs) are of significant industrial interest for the sustainable generation of valuable fine chemicals. When combined with other enzymes in multi-step cascades, the direct formation of fatty acid congeners can be accomplished with minimal processing steps. In this study, two cascade [...] Read more.
Oleate hydratases (OHs) are of significant industrial interest for the sustainable generation of valuable fine chemicals. When combined with other enzymes in multi-step cascades, the direct formation of fatty acid congeners can be accomplished with minimal processing steps. In this study, two cascade reactions are presented, which can be applied in one-pot approaches. The first cascade was placed “upstream” of an OH derived from Rhodococcus erythropolis (OhyRe), where a lipase from Candida rugosa was applied to hydrolyze triglycerides into free fatty acids, a crucial step for OH conversion. Further, we tested the lipase–OhyRe cascade with various types of renewable triglycerides of plant and microbial origin. In this context, the most efficient conversion was observed for microbial oil from Cutaneotrichosporon oleaginosus leading the way toward its industrial application. In contrast, the second cascade was placed “downstream” of OhyRe, where a novel secondary alcohol dehydrogenase (secADH) was applied to oxidize the hydroxylated fatty acid into a fatty acid ketone. Optimal reaction parameters for the cascade with the secADH were established, which allows this to be applied to high-throughput screens. Moreover, we describe a light-dependent route, thereby extending the catalytic efficiency of the OH enzyme system. Full article
(This article belongs to the Section Biocatalysis)
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19 pages, 2131 KB  
Article
Bioconversion of a Lignocellulosic Hydrolysate to Single Cell Oil for Biofuel Production in a Cost-Efficient Fermentation Process
by Zora S. Rerop, Nikolaus I. Stellner, Petra Graban, Martina Haack, Norbert Mehlmer, Mahmoud Masri and Thomas B. Brück
Fermentation 2023, 9(2), 189; https://doi.org/10.3390/fermentation9020189 - 18 Feb 2023
Cited by 15 | Viewed by 4420
Abstract
Cutaneotrichosporon oleaginosus is a highly efficient single cell oil producer, which in addition to hexoses and pentoses can metabolize organic acids. In this study, fed-batch cultivation with consumption-based acetic acid feeding was further developed to integrate the transformation of an industrial paper mill [...] Read more.
Cutaneotrichosporon oleaginosus is a highly efficient single cell oil producer, which in addition to hexoses and pentoses can metabolize organic acids. In this study, fed-batch cultivation with consumption-based acetic acid feeding was further developed to integrate the transformation of an industrial paper mill lignocellulosic hydrolysate (LCH) into yeast oil. Employing pentose-rich LCH as a carbon source instead of glucose significantly improved both biomass formation and lipid titer, reaching 55.73 ± 5.20 g/L and 42.1 ± 1.7 g/L (75.5% lipid per biomass), respectively. This hybrid approach of using acetic acid and LCH in one process was further optimized to increase the share of bioavailable carbon from LCH using a combination of consumption-based and continuous feeding. Finally, the techno-economic analysis revealed a 26% cost reduction when using LCH instead of commercial glucose. In summary, we developed a process leading to a holistic approach to valorizing a pentose-rich industrial waste by converting it into oleochemicals. Full article
(This article belongs to the Special Issue Yeast, Biofuels, and Value-Added Products)
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15 pages, 7368 KB  
Article
High-Cell-Density Yeast Oil Production with Diluted Substrates Imitating Microalgae Hydrolysate Using a Membrane Bioreactor
by Ayşe Koruyucu, Karlis Blums, Tillmann Peest, Laura Schmack-Rauscher, Thomas Brück and Dirk Weuster-Botz
Energies 2023, 16(4), 1757; https://doi.org/10.3390/en16041757 - 10 Feb 2023
Cited by 8 | Viewed by 3562
Abstract
Microbial oil production from industrial waste streams and biogenic resources, such as biomass hydrolysates, is emerging as a sustainable alternative to use of fossil and vegetable oils. However, the carbon sources of these substrates are typically diluted, leading to low product concentrations and, [...] Read more.
Microbial oil production from industrial waste streams and biogenic resources, such as biomass hydrolysates, is emerging as a sustainable alternative to use of fossil and vegetable oils. However, the carbon sources of these substrates are typically diluted, leading to low product concentrations and, therefore, high fermentation and downstream processing costs. In this study, high-cell-density yeast oil production with a defined medium, which imitated the sugar composition of a diluted substrate, a typical microalgal biomass hydrolysate, is carried out on a 50 L scale using a membrane bioreactor (MBR) consisting of a microfiltration unit suited for industrial application. The process was run on a semi-continuous mode to reduce operational costs. Oleaginous yeast Cutaneotrichosporon oleaginosus was used as a biocatalyst and lipid production was induced by phosphate deficiency in the medium with a C/P ratio of 3515 g g−1. In this way, high cellular lipid contents of up to 76.5% (w/w) of dry cell mass, an average lipid yield of 32% (w/w), and a lipid space–time yield (STY) of up to 8.88 g L−1 d−1 were achieved with final high cell densities of up to 116 g L−1 dry biomass. Furthermore, use of a defined medium and elemental analysis of the yeast cells and yeast oil enabled drawing an accurate carbon mass balance of the production system. Carbon conversion efficiencies—fraction of total carbon supplied in the form of sugars converted into lipids at the end of the process—of up to 61.5% were achieved from diluted substrates using the MBR with total cell retention. Considering these results, it is concluded that utilization of an MBR on a semi-continuous mode would be very reasonable for yeast oil production, enabling high productivities with diluted sugar substrates. Full article
(This article belongs to the Special Issue Biopower Technologies)
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12 pages, 2837 KB  
Article
Heterologous Expression of CFL1 Confers Flocculating Ability to Cutaneotrichosporon oleaginosus Lipid-Rich Cells
by Silvia Donzella and Concetta Compagno
J. Fungi 2022, 8(12), 1293; https://doi.org/10.3390/jof8121293 - 11 Dec 2022
Cited by 1 | Viewed by 2369
Abstract
Lipid extraction from microbial and microalgae biomass requires the separation of oil-rich cells from the production media. This downstream procedure represents a major bottleneck in biodiesel production, increasing the cost of the final product. Flocculation is a rapid and cheap system for removing [...] Read more.
Lipid extraction from microbial and microalgae biomass requires the separation of oil-rich cells from the production media. This downstream procedure represents a major bottleneck in biodiesel production, increasing the cost of the final product. Flocculation is a rapid and cheap system for removing solid particles from a suspension. This natural characteristic is displayed by some microorganisms due to the presence of lectin-like proteins (called flocculins/adhesins) in the cell wall. In this work, we showed, for the first time, that the heterologous expression of the adhesin Cfl1p endows the oleaginous species Cutaneotrichosporon oleaginosus with the capacity of cell flocculation. We used Helm’s test to demonstrate that the acquisition of this trait allows for reducing the time required for the separation of lipid-rich cells from liquid culture by centrifugation without altering the productivity. This improves the lipid production process remarkably by providing a more efficient downstream. Full article
(This article belongs to the Special Issue New Perspectives for Oleaginous Fungi)
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16 pages, 2837 KB  
Article
Recycling Food Waste and Saving Water: Optimization of the Fermentation Processes from Cheese Whey Permeate to Yeast Oil
by Silvia Donzella, Andrea Fumagalli, Stefania Arioli, Luisa Pellegrino, Paolo D’Incecco, Francesco Molinari, Giovanna Speranza, Daniela Ubiali, Marina S. Robescu and Concetta Compagno
Fermentation 2022, 8(7), 341; https://doi.org/10.3390/fermentation8070341 - 19 Jul 2022
Cited by 28 | Viewed by 5835
Abstract
With the aim of developing bioprocesses for waste valorization and a reduced water footprint, we optimized a two-step fermentation process that employs the oleaginous yeast Cutaneotrichosporon oleaginosus for the production of oil from liquid cheese whey permeate. For the first step, the addition [...] Read more.
With the aim of developing bioprocesses for waste valorization and a reduced water footprint, we optimized a two-step fermentation process that employs the oleaginous yeast Cutaneotrichosporon oleaginosus for the production of oil from liquid cheese whey permeate. For the first step, the addition of urea as a cost-effective nitrogen source allowed an increase in yeast biomass production. In the second step, a syrup from candied fruit processing, another food waste supplied as carbon feeding, triggered lipid accumulation. Consequently, yeast lipids were produced at a final concentration and productivity of 38 g/L and 0.57 g/L/h respectively, which are among the highest reported values. Through this strategy, based on the valorization of liquid food wastes (WP and mango syrup) and by recovering not only nutritional compounds but also the water necessary for yeast growth and lipid production, we addressed one of the main goals of the circular economy. In addition, we set up an accurate and fast-flow cytometer method to quantify the lipid content, avoiding the extraction step and the use of solvents. This can represent an analytical improvement to screening lipids in different yeast strains and to monitoring the process at the single-cell level. Full article
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26 pages, 645 KB  
Review
Cutaneotrichosporon oleaginosus: A Versatile Whole-Cell Biocatalyst for the Production of Single-Cell Oil from Agro-Industrial Wastes
by Nicola Di Fidio, Filippo Minonne, Claudia Antonetti and Anna Maria Raspolli Galletti
Catalysts 2021, 11(11), 1291; https://doi.org/10.3390/catal11111291 - 27 Oct 2021
Cited by 36 | Viewed by 9291
Abstract
Cutaneotrichosporon oleaginosus is an oleaginous yeast with several favourable qualities: It is fast growing, accumulates high amounts of lipids and has a very broad substrate spectrum. Its resistance to hydrolysis by-products makes it a promising biocatalyst for custom tailored microbial oils. C. oleaginosus [...] Read more.
Cutaneotrichosporon oleaginosus is an oleaginous yeast with several favourable qualities: It is fast growing, accumulates high amounts of lipids and has a very broad substrate spectrum. Its resistance to hydrolysis by-products makes it a promising biocatalyst for custom tailored microbial oils. C. oleaginosus can accumulate up to 60 wt.% of its biomass as lipids. This species is able to grow by using several compounds as a substrate, such as acetic acid, biodiesel-derived glycerol, N-acetylglucosamine, lignocellulosic hydrolysates, wastepaper and other agro-industrial wastes. This review is focused on state-of-the-art innovative and sustainable biorefinery schemes involving this promising yeast and second- and third-generation biomasses. Moreover, this review offers a comprehensive and updated summary of process strategies, biomass pretreatments and fermentation conditions for enhancing lipid production by C. oleaginosus as a whole-cell biocatalyst. Finally, an overview of the main industrial applications of single-cell oil is reported together with future perspectives. Full article
(This article belongs to the Special Issue Biocatalysis and Bioconversion Utilizing Sustainable Feedstock)
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