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Keywords = Beijing B0/W148

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21 pages, 3343 KB  
Article
Insight into Population Structure and Drug Resistance of Pediatric Tuberculosis Strains from China and Russia Gained through Whole-Genome Sequencing
by Svetlana Zhdanova, Wei-Wei Jiao, Viacheslav Sinkov, Polina Khromova, Natalia Solovieva, Alexander Mushkin, Igor Mokrousov, Olesya Belopolskaya, Aleksey Masharsky, Anna Vyazovaya, Lubov Rychkova, Lubov Kolesnikova, Viacheslav Zhuravlev, A-Dong Shen and Oleg Ogarkov
Int. J. Mol. Sci. 2023, 24(12), 10302; https://doi.org/10.3390/ijms241210302 - 18 Jun 2023
Cited by 1 | Viewed by 2199
Abstract
This study aimed to determine phenotypic and genotypic drug resistance patterns of Mycobacterium tuberculosis strains from children with tuberculosis (TB) in China and Russia, two high-burden countries for multi/extensively-drug resistant (MDR/XDR) TB. Whole-genome sequencing data of M. tuberculosis isolates from China (n [...] Read more.
This study aimed to determine phenotypic and genotypic drug resistance patterns of Mycobacterium tuberculosis strains from children with tuberculosis (TB) in China and Russia, two high-burden countries for multi/extensively-drug resistant (MDR/XDR) TB. Whole-genome sequencing data of M. tuberculosis isolates from China (n = 137) and Russia (n = 60) were analyzed for phylogenetic markers and drug-resistance mutations, followed by comparison with phenotypic susceptibility data. The Beijing genotype was detected in 126 Chinese and 50 Russian isolates. The Euro-American lineage was detected in 10 Russian and 11 Chinese isolates. In the Russian collection, the Beijing genotype and Beijing B0/W148-cluster were dominated by MDR strains (68% and 94%, respectively). Ninety percent of B0/W148 strains were phenotypically pre-XDR. In the Chinese collection, neither of the Beijing sublineages was associated with MDR/pre-XDR status. MDR was mostly caused by low fitness cost mutations (rpoB S450L, katG S315T, rpsL K43R). Chinese rifampicin-resistant strains demonstrated a higher diversity of resistance mutations than Russian isolates (p = 0.003). The rifampicin and isoniazid resistance compensatory mutations were detected in some MDR strains, but they were not widespread. The molecular mechanisms of M. tuberculosis adaptation to anti-TB treatment are not unique to the pediatric strains, but they reflect the general situation with TB in Russia and China. Full article
(This article belongs to the Special Issue Cellular and Molecular Mechanisms in Mycobacterial Infection 2.0)
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10 pages, 6142 KB  
Communication
A 237 GHz Traveling Wave Tube for Cloud Radar
by Ying Li, Pan Pan, Bowen Song, Lin Zhang and Jinjun Feng
Electronics 2023, 12(10), 2153; https://doi.org/10.3390/electronics12102153 - 9 May 2023
Cited by 1 | Viewed by 2294
Abstract
In this article, the first 237 GHz traveling wave tube (TWT) is presented as a high-power amplifier for the terahertz (THz) cloud radar. As is common with previous G-band traveling wave tubes developed at Beijing Vacuum Electronics Research Institute, the 237 GHz traveling [...] Read more.
In this article, the first 237 GHz traveling wave tube (TWT) is presented as a high-power amplifier for the terahertz (THz) cloud radar. As is common with previous G-band traveling wave tubes developed at Beijing Vacuum Electronics Research Institute, the 237 GHz traveling wave tube employs a 20 kV, 50 mA pencil electron beam focused using periodic permanent magnets (PPMs) to achieve compactness. A folded waveguide (FWG) slow-wave structure (SWS) with modified circular bends is optimized to provide high impedance and eliminate sideband oscillations. Limited by insufficient drive power, this device is not saturated. The measured maximum output power and gain are 8.9 W and 35.7 dB, and the 3 dB gain bandwidth achieves 4 GHz. Full article
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14 pages, 1157 KB  
Article
Genetic Diversity and Primary Drug Resistance of Mycobacterium tuberculosis Beijing Genotype Strains in Northwestern Russia
by Anna Vyazovaya, Alena Gerasimova, Regina Mudarisova, Daria Terentieva, Natalia Solovieva, Viacheslav Zhuravlev and Igor Mokrousov
Microorganisms 2023, 11(2), 255; https://doi.org/10.3390/microorganisms11020255 - 19 Jan 2023
Cited by 16 | Viewed by 2371
Abstract
The Beijing genotype is the main family of Mycobacterium tuberculosis in Russia. We analyzed its diversity and drug resistance in provinces across Northwestern Russia to identify the epidemiologically relevant Beijing strains. The study collection included 497 isolates from newly-diagnosed tuberculosis (TB) patients. Bacterial [...] Read more.
The Beijing genotype is the main family of Mycobacterium tuberculosis in Russia. We analyzed its diversity and drug resistance in provinces across Northwestern Russia to identify the epidemiologically relevant Beijing strains. The study collection included 497 isolates from newly-diagnosed tuberculosis (TB) patients. Bacterial isolates were subjected to drug-susceptibility testing and genotyping. The Beijing genotype was detected in 57.5% (286/497); 50% of the Beijing strains were multidrug-resistant (MDR). Central Asian/Russian and B0/W148 groups included 176 and 77 isolates, respectively. MDR was more frequent among B0/W148 strains compared to Central Asian/Russian strains (85.7% vs. 40.3%, p < 0.0001). Typing of 24 minisatellite loci of Beijing strains revealed 82 profiles; 230 isolates were in 23 clusters. The largest Central Asian/Russian types were 94-32 (n = 75), 1065-32 (n = 17), and 95-32 (n = 12). B0/W148 types were 100-32 (n = 59) and 4737-32 (n = 5). MDR was more frequent in types 1065-32 (88.2%), 100-32 (83.1%), and 4737-32 (100%). In contrast, type 9391-32 (n = 9) included only drug-susceptible strains. To conclude, M. tuberculosis Beijing genotype is dominant in Northwestern Russia, and an active transmission of overwhelmingly MDR B0/W148 types explains the reported increase of MDR-TB. The presence of MDR-associated minor variants (type 1071-32/ancient Beijing and Central Asia Outbreak strain) in some of the studied provinces also requires attention. Full article
(This article belongs to the Special Issue Diversity of Mycobacterium tuberculosis)
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15 pages, 1849 KB  
Article
Spatio-Temporal Evolution Characteristics and Spatial Differences in Urban Tourism Network Attention in China: Based on the Baidu Index
by Guanghai Zhang and Hongying Yuan
Sustainability 2022, 14(20), 13252; https://doi.org/10.3390/su142013252 - 14 Oct 2022
Cited by 16 | Viewed by 2795
Abstract
There is a long-term equilibrium relationship between urban tourism network attention (UTNA) and the volume of tourism. Understanding the spatio-temporal patterns of UTNA before and after the COVID-19 pandemic has important implications for destination management. On the basis of the Baidu index, this [...] Read more.
There is a long-term equilibrium relationship between urban tourism network attention (UTNA) and the volume of tourism. Understanding the spatio-temporal patterns of UTNA before and after the COVID-19 pandemic has important implications for destination management. On the basis of the Baidu index, this study collected the tourism network attention of 337 prefecture-level cities in China from 2018 to 2021 through data mining and analyzed the spatio-temporal evolution characteristics and regional differences in UTNA in China by using the seasonal concentration index, the Zipf model and the Dagum Gini coefficient. The results show that, firstly, the UTNA decreased significantly during the study period, with significant seasonal variability and spatial unevenness; April, July, August and October comprise the high season, while January, February, November and December comprise the low season. Secondly, in terms of regional heterogeneity, the seasonal differences in UTNA are generally greater in the northeast regions than in the central, and western regions, and are the smallest in the eastern regions. Thirdly, the UTNA shows a strong rank-scale characteristic, indicating that Beijing, Chongqing, Shanghai, Guangzhou, Xi’an, and others that are rich in tourism resources are the main high-value cities, and “core-edge” characteristics gradually formed around these municipalities and capital cities. Lastly, of the four regions, the northeast regions had the largest intraregional and inter-regional differences. From the perspective of the contribution to regional difference sources Gnb > Gt > Gw, inter-regional disparities are the main reasons for the overall differences. Accordingly, policy suggestions are proposed to further promote the sustainable development of tourism destinations. Full article
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18 pages, 4679 KB  
Article
MDR and Pre-XDR Clinical Mycobacterium tuberculosis Beijing Strains: Assessment of Virulence and Host Cytokine Response in Mice Infectious Model
by Mikhail V. Fursov, Egor A. Shitikov, Denis A. Lagutkin, Anastasiia D. Fursova, Elena A. Ganina, Tatiana I. Kombarova, Natalia S. Grishenko, Tatiana I. Rudnitskaya, Dmitry A. Bespiatykh, Nadezhda V. Kolupaeva, Viktoria V. Firstova, Lubov V. Domotenko, Anna E. Panova, Anatoliy S. Vinokurov, Vladimir A. Gushchin, Artem P. Tkachuk, Irina A. Vasilyeva, Vasiliy D. Potapov and Ivan A. Dyatlov
Microorganisms 2021, 9(8), 1792; https://doi.org/10.3390/microorganisms9081792 - 23 Aug 2021
Cited by 7 | Viewed by 3916
Abstract
Mycobacterium tuberculosis Beijing genotype associated with drug resistance is a growing public health problem worldwide. The aim of this study was the assessment of virulence for C57BL/6 mice after infection by clinical M. tuberculosis strains 267/47 and 120/26, which belong to the modern [...] Read more.
Mycobacterium tuberculosis Beijing genotype associated with drug resistance is a growing public health problem worldwide. The aim of this study was the assessment of virulence for C57BL/6 mice after infection by clinical M. tuberculosis strains 267/47 and 120/26, which belong to the modern sublineages B0/W148 and Central Asia outbreak of the Beijing genotype, respectively. The sublineages were identified by the analysis of the strains’ whole-genomes. The strains 267/47 and 120/26 were characterized as agents of pre-extensively drug-resistant (pre-XDR) and multidrug-resistant (MDR) tuberculosis, respectively. Both clinical strains were slow-growing in 7H9 broth compared to the M. tuberculosis H37Rv strain. The survival rates of C57BL/6 mice infected by 267/47, 120/26, and H37Rv on the 150th day postinfection were 10%, 40%, and 70%, respectively. Mycobacterial load in the lungs, spleen, and liver was higher and histopathological changes were more expressed for mice infected by the 267/47 strain compared to those infected by the 120/26 and H37Rv strains. The cytokine response in the lungs of C57BL/6 mice after infection with the 267/47, 120/26, and H37Rv strains was different. Notably, proinflammatory cytokine genes Il-1α, Il-6, Il-7, and Il-17, as well as anti-inflammatory genes Il-6 and Il-13, were downregulated after an infection caused by the 267/47 strain compared to those after infection with the H37Rv strain. Full article
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12 pages, 584 KB  
Article
Genomic Variations in Drug Resistant Mycobacterium tuberculosis Strains Collected from Patients with Different Localization of Infection
by Ekaterina Chernyaeva, Mikhail Rotkevich, Ksenia Krasheninnikova, Alla Lapidus, Dmitrii E. Polev, Natalia Solovieva, Viacheslav Zhuravlev, Piotr Yablonsky and Stephen J. O’Brien
Antibiotics 2021, 10(1), 27; https://doi.org/10.3390/antibiotics10010027 - 31 Dec 2020
Cited by 6 | Viewed by 3315
Abstract
Mycobacterium tuberculosis is a highly studied pathogen due to public health importance. Despite this, problems like early drug resistance, diagnostics and treatment success prediction are still not fully resolved. Here, we analyze the incidence of point mutations widely used for drug resistance detection [...] Read more.
Mycobacterium tuberculosis is a highly studied pathogen due to public health importance. Despite this, problems like early drug resistance, diagnostics and treatment success prediction are still not fully resolved. Here, we analyze the incidence of point mutations widely used for drug resistance detection in laboratory practice and conduct comparative analysis of whole-genome sequence (WGS) for clinical M. tuberculosis strains collected from patients with pulmonary tuberculosis (PTB) and extra-pulmonary tuberculosis (XPTB) localization. A total of 72 pulmonary and 73 extrapulmonary microbiologically characterized M. tuberculosis isolates were collected from patients from 2007 to 2014 in Russia. Genomic DNA was used for WGS and obtained data allowed identifying major mutations known to be associated with drug resistance to first-line and second-line antituberculous drugs. In some cases previously described mutations were not identified. Using genome-based phylogenetic analysis we identified M. tuberculosis substrains associated with distinctions in the occurrence in PTB vs. XPTB cases. Phylogenetic analyses did reveal M. tuberculosis genetic substrains associated with TB localization. XPTB was associated with Beijing sublineages Central Asia (Beijing CAO), Central Asia Clade A (Beijing A) and 4.8 groups, while PTB localization was associated with group LAM (4.3). Further, the XPTB strain in some cases showed elevated drug resistance patterns relative to PTB isolates. HIV was significantly associated with the development of XPTB in the Beijing B0/W148 group and among unclustered Beijing isolates. Full article
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12 pages, 1173 KB  
Article
Metabolic Changes of Mycobacterium tuberculosis during the Anti-Tuberculosis Therapy
by Julia Bespyatykh, Egor Shitikov, Dmitry Bespiatykh, Andrei Guliaev, Ksenia Klimina, Vladimir Veselovsky, Georgij Arapidi, Marine Dogonadze, Viacheslav Zhuravlev, Elena Ilina and Vadim Govorun
Pathogens 2020, 9(2), 131; https://doi.org/10.3390/pathogens9020131 - 18 Feb 2020
Cited by 15 | Viewed by 5085
Abstract
Tuberculosis, caused by Mycobacterium tuberculosis complex bacteria, remains one of the most pressing health problems. Despite the general trend towards reduction of the disease incidence rate, the situation remains extremely tense due to the distribution of the resistant forms. Most often, these strains [...] Read more.
Tuberculosis, caused by Mycobacterium tuberculosis complex bacteria, remains one of the most pressing health problems. Despite the general trend towards reduction of the disease incidence rate, the situation remains extremely tense due to the distribution of the resistant forms. Most often, these strains emerge through the intra-host microevolution of the pathogen during treatment failure. In the present study, the focus was on three serial clinical isolates of Mycobacterium tuberculosis Beijing B0/W148 cluster from one patient with pulmonary tuberculosis, to evaluate their changes in metabolism during anti-tuberculosis therapy. Using whole genome sequencing (WGS), 9 polymorphisms were determined, which occurred in a stepwise or transient manner during treatment and were linked to the resistance (GyrA D94A; inhA t-8a) or virulence. The effect of the inhA t-8a mutation was confirmed on both proteomic and transcriptomic levels. Additionally, the amount of RpsL protein, which is a target of anti-tuberculosis drugs, was reduced. At the systemic level, profound changes in metabolism, linked to the evolution of the pathogen in the host and the effects of therapy, were documented. An overabundance of the FAS-II system proteins (HtdX, HtdY) and expression changes in the virulence factors have been observed at the RNA and protein levels. Full article
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