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Authors = Amanda J. Wilson

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2 pages, 132 KiB  
Correction
Correction: Lloyd et al. Chemical Diversity of UK-Grown Tea Explored Using Metabolomics and Machine Learning. Metabolites 2025, 15, 52
by Amanda J. Lloyd, Alina Warren-Walker, Jasen Finch, Jo Harper, Kathryn Bennet, Alison Watson, Laura Lyons, Pilar Martinez Martin, Thomas Wilson and Manfred Beckmann
Metabolites 2025, 15(8), 538; https://doi.org/10.3390/metabo15080538 - 8 Aug 2025
Viewed by 127
Abstract
There was a provenance issue with the seed varieties in the original publication [...] Full article
16 pages, 968 KiB  
Article
Green Tea with Rhubarb Root Reduces Plasma Lipids While Preserving Gut Microbial Stability in a Healthy Human Cohort
by Amanda J. Lloyd, MJ Pilar Martinez-Martin, Alina Warren-Walker, Matthew D. Hitchings, Odin M. Moron-Garcia, Alison Watson, Bernardo Villarreal-Ramos, Laura Lyons, Thomas Wilson, Gordon Allison and Manfred Beckmann
Metabolites 2025, 15(2), 139; https://doi.org/10.3390/metabo15020139 - 19 Feb 2025
Viewed by 1308
Abstract
Background/Objectives: Cardiovascular diseases remain a leading cause of mortality and morbidity, and dyslipidaemia is one of the major risk factors. The widespread use of herbs and medicinal plants in traditional medicine has garnered increasing recognition as a valuable resource for increasing wellness [...] Read more.
Background/Objectives: Cardiovascular diseases remain a leading cause of mortality and morbidity, and dyslipidaemia is one of the major risk factors. The widespread use of herbs and medicinal plants in traditional medicine has garnered increasing recognition as a valuable resource for increasing wellness and reducing the onset of disease. Several epidemiologic and clinical studies have shown that altering blood lipid profiles and maintaining gut homeostasis may protect against cardiovascular diseases. Methods: A randomised, active-controlled parallel human clinical trial (n = 52) with three herbal tea infusions (green (Camellia sinensis) tea with rhubarb root, green tea with senna, and active control green tea) daily for 21 days in a free-living healthy adult cohort was conducted to assess the potential for health benefits in terms of plasma lipids and gut health. Paired plasma samples were analysed using Afinion lipid panels (total cholesterol, LDL (low-density lipoprotein) cholesterol, HDL (high-density lipoprotein) cholesterol, triglycerides, and non-HDL cholesterol) and paired stool samples were analysed using 16S rRNA amplicon sequencing to determine bacterial diversity within the gut microbiome. Results: Among participants providing fasting blood samples before and after the intervention (n = 47), consumption of herbal rhubarb root tea and green tea significantly lowered total cholesterol, LDL-cholesterol, and non-HDL cholesterol (p < 0.05) in plasma after 21 days of daily consumption when compared with concentrations before the intervention. No significant change was observed in the senna tea group. In participants providing stool samples (n = 48), no significant differences in overall microbial composition were observed between pre- and post-intervention, even at the genus level. While no significant changes in overall microbial composition were observed, specific bacterial genera, such as Dorea spp., showed correlations with LDL cholesterol concentrations, suggesting potential microbiota-mediated effects of tea consumption. Diet and BMI was maintained in each of the three groups before and after the trial. Conclusions: It was found that drinking a cup of rhubarb root herbal or green tea infusion for 21 days produced beneficial effects on lipid profiles and maintained gut eubiosis without observable adverse effects in a healthy human cohort. More studies are needed to fully understand the effects of rhubarb root and green tea in fatty acid metabolism and gut microbial composition. Full article
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16 pages, 5136 KiB  
Article
Chemical Diversity of UK-Grown Tea Explored Using Metabolomics and Machine Learning
by Amanda J. Lloyd, Alina Warren-Walker, Jasen Finch, Jo Harper, Kathryn Bennet, Alison Watson, Laura Lyons, Pilar Martinez Martin, Thomas Wilson and Manfred Beckmann
Metabolites 2025, 15(1), 52; https://doi.org/10.3390/metabo15010052 - 15 Jan 2025
Cited by 4 | Viewed by 1316 | Correction
Abstract
Background/Objectives: Dartmoor Estate Tea plantation in Devon, UK, is renowned for its unique microclimate and varied soil conditions, which contribute to the distinctive flavours and chemical profiles of tea. The chemical diversity of fresh leaf samples from various garden locations was explored within [...] Read more.
Background/Objectives: Dartmoor Estate Tea plantation in Devon, UK, is renowned for its unique microclimate and varied soil conditions, which contribute to the distinctive flavours and chemical profiles of tea. The chemical diversity of fresh leaf samples from various garden locations was explored within the plantation. Methods: Fresh leaf, which differed by location, cultivar, time of day, and variety, was analysed using Flow Infusion Electrospray Ionisation Mass Spectrometry (FIE-MS). Results: Random forest classification revealed no significant differences between Georgian N2 cultivar garden locations. However, a significant degree of variability was observed within four tri-clonal variants (Tocklai Variety) with TV9 exhibiting greater similarity to the Georgian N2 cultivar compared to TV8 and TV11, while TV11 was found to be most like TV1. The intraclass variability in leaf composition was similar between the varieties. We explored the metabolic changes over the day in one variant (Camellia assamica Masters), yielding a model with a significant R2 value of 0.617 (p < 0.01, 3000 permutations). Starch and sucrose metabolism was found to be significant where the abundance of these chemical features increased throughout the day and then began to decrease at night. Conclusions: This research highlights the complex interplay of cultivars, geographical location, and temporal factors on the chemical composition of tea. It provides insightful data on the metabolic pathways influencing tea cultivation and production and underscores the importance of these variables in determining the final chemical profile and organoleptic characteristics of tea products. Full article
(This article belongs to the Section Plant Metabolism)
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27 pages, 5879 KiB  
Article
The Influenza B Virus Victoria and Yamagata Lineages Display Distinct Cell Tropism and Infection-Induced Host Gene Expression in Human Nasal Epithelial Cell Cultures
by Jo L. Wilson, Elgin Akin, Ruifeng Zhou, Anne Jedlicka, Amanda Dziedzic, Hsuan Liu, Katherine Z. J. Fenstermacher, Richard E. Rothman and Andrew Pekosz
Viruses 2023, 15(9), 1956; https://doi.org/10.3390/v15091956 - 20 Sep 2023
Cited by 5 | Viewed by 4436
Abstract
Understanding Influenza B virus infections is of critical importance in our efforts to control severe influenza and influenza-related diseases. Until 2020, two genetic lineages of influenza B virus—Yamagata and Victoria—circulated in the population. These lineages are antigenically distinct, but the differences in virus [...] Read more.
Understanding Influenza B virus infections is of critical importance in our efforts to control severe influenza and influenza-related diseases. Until 2020, two genetic lineages of influenza B virus—Yamagata and Victoria—circulated in the population. These lineages are antigenically distinct, but the differences in virus replication or the induction of host cell responses after infection have not been carefully studied. Recent IBV clinical isolates of both lineages were obtained from influenza surveillance efforts of the Johns Hopkins Center of Excellence in Influenza Research and Response and characterized in vitro. B/Victoria and B/Yamagata clinical isolates were recognized less efficiently by serum from influenza-vaccinated individuals in comparison to the vaccine strains. B/Victoria lineages formed smaller plaques on MDCK cells compared to B/Yamagata, but infectious virus production in primary human nasal epithelial cell (hNEC) cultures showed no differences. While ciliated epithelial cells were the dominant cell type infected by both lineages, B/Victoria lineages had a slight preference for MUC5AC-positive cells, and B/Yamagata lineages infected more basal cells. Finally, while both lineages induced a strong interferon response 48 h after infection of hNEC cultures, the B/Victoria lineages showed a much stronger induction of interferon-related signaling pathways compared to B/Yamagata. This demonstrates that the two influenza B virus lineages differ not only in their antigenic structure but also in their ability to induce host innate immune responses. Full article
(This article belongs to the Section Human Virology and Viral Diseases)
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19 pages, 1076 KiB  
Article
Cognitive and Cultural Factors That Affect General Vaccination and COVID-19 Vaccination Attitudes
by Alla Keselman, Catherine Arnott Smith, Amanda J. Wilson, Gondy Leroy and David R. Kaufman
Vaccines 2023, 11(1), 94; https://doi.org/10.3390/vaccines11010094 - 30 Dec 2022
Cited by 14 | Viewed by 8353
Abstract
The development of COVID-19 vaccines is a major scientific accomplishment that has armed communities worldwide with powerful epidemic control tools. Yet, COVID-19 vaccination efforts in the US have been marred by persistent vaccine hesitancy. We used survey methodology to explore the impact of [...] Read more.
The development of COVID-19 vaccines is a major scientific accomplishment that has armed communities worldwide with powerful epidemic control tools. Yet, COVID-19 vaccination efforts in the US have been marred by persistent vaccine hesitancy. We used survey methodology to explore the impact of different cognitive and cultural factors on the public’s general vaccination attitudes, attitudes towards COVID-19 vaccines, and COVID-19 vaccination status. The factors include information literacy, science literacy, attitudes towards science, interpersonal trust, public health trust, political ideology, and religiosity. The analysis suggests that attitudes towards vaccination are influenced by a multitude of factors that operate in a complex manner. General vaccination attitude was most affected by attitudes towards science and public health trust and to a lesser degree by information literacy, science literacy, and religiosity. Attitudes towards COVID-19 vaccines were most affected by public health trust and to a lesser extent by general trust, ideology and attitudes towards science. Vaccination status was most influenced by public health trust. Possible mediating effects of correlated variables in the model need to be further explored. The study underscores the importance of understanding the relationship between public health trust, literacies, and sociocultural factors. Full article
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6 pages, 230 KiB  
Communication
Interannual Winter Site Fidelity for Yellow and Black Rails
by Christopher J. Butler, Tabitha W. Olsen, Bailey Kephart, Jennifer K. Wilson and Amanda A. Haverland
Diversity 2022, 14(5), 357; https://doi.org/10.3390/d14050357 - 1 May 2022
Cited by 4 | Viewed by 2642
Abstract
Yellow Rail (Coturnicops noveboracensis) is a species of conservation concern, while the Eastern Black Rail (Laterallus jamaicensis jamaicensis) has recently been listed as Threatened. Both species winter primarily in coastal areas from Texas through North Carolina. Between-year winter site [...] Read more.
Yellow Rail (Coturnicops noveboracensis) is a species of conservation concern, while the Eastern Black Rail (Laterallus jamaicensis jamaicensis) has recently been listed as Threatened. Both species winter primarily in coastal areas from Texas through North Carolina. Between-year winter site fidelities of these species have not previously been reported, so we analyzed the recapture histories of Yellow Rails banded in southeastern Oklahoma (from 2008 to 2018) and coastal Texas (from 2006 to 2018), as well as Black Rails banded in Texas from 2006 to 2018. We banded 111 Yellow Rails in Oklahoma and 421 Yellow Rails in Texas during this time, as well as 94 Black Rails in Texas. Although Yellow Rails were routinely recaptured within season, only five individuals were recaptured between years. All recaptured birds were in Texas. Black Rails likewise exhibited low interannual site fidelity, with no interannual recaptures. The apparent low interannual site fidelity of Yellow Rails (1.1% in Texas, 0% in Oklahoma) and Black Rails (0%) is similar to that reported for other grassland species wintering in grasslands in this area (e.g., LeConte’s Sparrow (Ammodramus leconteii), Henslow’s Sparrow (A. henslowii), and Sedge Wren (Cistothorus stellaris)), and we speculate that low site fidelity could potentially be advantageous for species that use early successional habitats. Full article
(This article belongs to the Special Issue Wildlife Population Ecology and Spatial Ecology under Global Change)
20 pages, 2247 KiB  
Article
An Extensive Metabolomics Workflow to Discover Cardiotoxin-Induced Molecular Perturbations in Microtissues
by Tara J. Bowen, Andrew R. Hall, Gavin R. Lloyd, Ralf J. M. Weber, Amanda Wilson, Amy Pointon and Mark R. Viant
Metabolites 2021, 11(9), 644; https://doi.org/10.3390/metabo11090644 - 21 Sep 2021
Cited by 6 | Viewed by 3483
Abstract
Discovering modes of action and predictive biomarkers of drug-induced structural cardiotoxicity offers the potential to improve cardiac safety assessment of lead compounds and enhance preclinical to clinical translation during drug development. Cardiac microtissues are a promising, physiologically relevant, in vitro model, each composed [...] Read more.
Discovering modes of action and predictive biomarkers of drug-induced structural cardiotoxicity offers the potential to improve cardiac safety assessment of lead compounds and enhance preclinical to clinical translation during drug development. Cardiac microtissues are a promising, physiologically relevant, in vitro model, each composed of ca. 500 cells. While untargeted metabolomics is capable of generating hypotheses on toxicological modes of action and discovering metabolic biomarkers, applying this technology to low-biomass microtissues in suspension is experimentally challenging. Thus, we first evaluated a filtration-based approach for harvesting microtissues and assessed the sensitivity and reproducibility of nanoelectrospray direct infusion mass spectrometry (nESI-DIMS) measurements of intracellular extracts, revealing samples consisting of 28 pooled microtissues, harvested by filtration, are suitable for profiling the intracellular metabolome and lipidome. Subsequently, an extensive workflow combining nESI-DIMS untargeted metabolomics and lipidomics of intracellular extracts with ultra-high performance liquid chromatography-mass spectrometry (UHPLC-MS/MS) analysis of spent culture medium, to profile the metabolic footprint and quantify drug exposure concentrations, was implemented. Using the synthetic drug and model cardiotoxin sunitinib, time-resolved metabolic and lipid perturbations in cardiac microtissues were investigated, providing valuable data for generating hypotheses on toxicological modes of action and identifying putative biomarkers such as disruption of purine metabolism and perturbation of polyunsaturated fatty acid levels. Full article
(This article belongs to the Special Issue Toxicometabolomics)
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12 pages, 248 KiB  
Article
Effect of Training Phase on Physical and Physiological Parameters of Male Powerlifters
by Daniel A. Hackett, Guy C. Wilson, Lachlan Mitchell, Marjan Mosalman Haghighi, Jillian L. Clarke, Yorgi Mavros, Helen O’Connor, Amanda D. Hagstrom, Gary J. Slater, Justin Keogh and Chris McLellan
Sports 2020, 8(8), 106; https://doi.org/10.3390/sports8080106 - 30 Jul 2020
Cited by 4 | Viewed by 6240
Abstract
Longitudinal research on training and dietary practices of natural powerlifters is limited. This study investigated the effect of phases of training on physical and physiological parameters in male natural powerlifters. Nine participants completed testing at two time points: (i) preparatory phase (~3 months [...] Read more.
Longitudinal research on training and dietary practices of natural powerlifters is limited. This study investigated the effect of phases of training on physical and physiological parameters in male natural powerlifters. Nine participants completed testing at two time points: (i) preparatory phase (~3 months prior to a major competition) and (ii) competition phase (1–2 weeks from a major competition). No significant changes between training phases were found for muscle strength and power. A trend for significance was found for decreased muscle endurance of the lower body (−24.4%, p = 0.08). A significant increase in leg lean mass was found at the competition phase (2.3%, p = 0.04), although no changes for other body composition measures were observed. No change was observed for any health marker except a trend for increased urinary creatinine clearance at the competition phase (12.5%, p = 0.08). A significant reduction in training volume for the lower body (−75.0%, p = 0.04) and a trend for a decrease in total energy intake (−17.0%, p = 0.06) was observed during the competition phase. Despite modifications in training and dietary practices, it appears that muscle performance, body composition, and health status remain relatively stable between training phases in male natural powerlifters. Full article
16 pages, 917 KiB  
Article
Global Aquaculture Performance Index (GAPI): The First Global Environmental Assessment of Marine Fish Farming
by John P. Volpe, Jennifer L.M. Gee, Valerie A. Ethier, Martina Beck, Amanda J. Wilson and Jenna M.S. Stoner
Sustainability 2013, 5(9), 3976-3991; https://doi.org/10.3390/su5093976 - 17 Sep 2013
Cited by 24 | Viewed by 9521
Abstract
“Sustainable” is among the most sought after of all seafood product adjectives. Ironically it is also one of the most poorly defined and understood. The Global Aquaculture Performance Index (GAPI) is the first tool to assess environmental performance of global marine aquaculture production, [...] Read more.
“Sustainable” is among the most sought after of all seafood product adjectives. Ironically it is also one of the most poorly defined and understood. The Global Aquaculture Performance Index (GAPI) is the first tool to assess environmental performance of global marine aquaculture production, permitting direct comparison of disparate species, production methods and jurisdictions. Clear patterns emerge from this analysis; significant variation of environmental performance is driven by the species being farmed, significant room for improvement exists across the entire sector, the worst performing players are also the fastest growing, particularly within Asia, and perhaps most importantly, this work highlights the potential trap awaiting policy makers who focus too narrowly on farm production efficiency alone as a solution to diminishing seafood availability. Full article
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