Smart Logistics Model for Supply Chain Management via Brain-Inspired Geometric Deep Networks
Abstract
1. Introduction
- (i)
- It provides a parallel brain-inspired deep network consisting of convolutional, LSTM and GraphSAGE layers for constructing patterns to highlight differences in categories.
- (ii)
- The suggested brain-inspired approach uses graph embedding of the supply chain database. The hidden connections between feature vectors are used for logistics prediction. These connections are inspired by the functional connectivity between different brain regions. The contribution emphasizes the biomimetic aspect of the proposed methodology.
- (iii)
- The proposed brain-inspired network architecture predicts the logistics delay and provides fundamental assistance for risk management.
- (iv)
- It provides a novel structure for logistics parameter prediction, including logistics shipment, logistics traffic status, logistics shipment status, and logistics delays, according to five benchmark datasets.
- (v)
- It presents an intelligent model for restocking strategy forecasting considering healthcare logistics supply chain datasets.
- (vi)
- It creates a smart multi-task logistics supply chain model with efficient performance in various logistics scenarios regarding five significant supply chain databases.
- (vii)
- The important biomimetic aspect of our approach considers sequential optimization utilizing the particle swarm optimizer and the Adam approach.
- (viii)
- The biomimetic aspects of this study are considering brain-inspired deep networks, brain connectivity-based graph input for the proposed geometric network, training deep learning-based smart networks for supply chain logistics management, and healthcare applications regarding Pharmaceutical Supply Chain and Hospital Supply Chain datasets.
2. Related Works
3. Materials and Methods
3.1. Database Setting
3.2. Graph Convolution
3.3. The GraphSAGE Formulation
| Algorithm 1: The pseudo-code for GraphSAGE. |
3.4. The Graph Attention
4. Methodology
4.1. Pre-Processing Stage
- Target feature specifications: We have thoroughly explained the details of this step in the Materials and Methods section (Section 3.1).
- The text-to-numeric conversions: Converting text-like features in datasets to integers is the initial step of the pre-processing stage. Cleaning the features via the selection of features is another important step. The clean array of features is applied to the graph embedding phase. Setting a balance between sample numbers of different categories during training and classification is another step in the pre-processing stage. The target for training the proposed H-GSN is considered the zero-one conversion of the on-time delivery status and late delivery into zero and one, respectively. Also, the digit conversion of the shipment type has been considered for the DataCo database. For the Shipping database, the target is the logistics shipment modes, the logistics warehouse number, and the binary digit conversion of logistics on-time reaching. The targets regarding the Smart Logistics dataset are logistic IDs, digit conversion of two important logistics parameters, including logistics traffic status and shipment status. The automatic prediction of logistics restocking strategy is the target feature of the two benchmark healthcare datasets.
- Sorting and reorganizing the dataset according to the target labels: This is an important procedure during data preparation for deep learning. The data has been sorted to balance class-specific datasets. For the Mode of Shipment, the dataset has been reorganized and sorted according to the numerical labels. A for loop has been considered in the Python ver 3.13.00 code to reorganize the dataset according to the target label and prevent imbalanced train and test splits regarding each category.
- The standard scaling of the feature vectors: Utilization of min-max scaling and the standard scaling has shown better performance of the prediction strategies considering the standard scaling procedure. It is a necessary part for optimal training of our proposed method. Windowing for constructing a graph of neighboring nodes is another step of the pre-processing stage.
- The data splitting for cross-validation, train and test splits, has been formed using the scikit-learn package and importing the function of the K-fold strategy.
4.2. Graph Construction
4.3. Proposed H-GSN Architecture
4.4. Training and Evaluation of the Proposed H-GSN
| Algorithm 2: Pseudo-code for the proposed H-GSN. |
| Proposed Hybrid GraphSAGE Network (H-GSN) Input: (1) Data vectors X, (2) A threshold level, (3) Window size for adjacency matrix, (4) Number of layers for parallel parts of the hybrid network, (5) Labeled train and test samples Xtrain and Xtest, Output: Class Labels for Xtest Initialize the parameters. Training corresponding to the 10-fold cross-validation: 1: Determine the correlation co-efficient of the of X in Xtrain. 2: Calculate the adjacency matrix W using the sigmoid function for the result of step 1. 3: Extract the output of the GraphSAGE layers. 6: Calculate the output of the dropout layer. 7: Calculate the output of the parallel convolutional and LSTM layers. 8: Multi-taskoptimization of the weights of the hybrid layers using optimal loss function. 9: Update the weights of the layers regarding the total’s hybrid cost function: 10: Attain the predictions for the graph illustrations in accordance with Xtest using the trained H-GSN. Stop specifications: A maximum number of trials or acceptable accuracy. |
5. Results and Discussion

6. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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| Reference | Method | Contribution | Advantages | Disadvantages |
|---|---|---|---|---|
| Akbari-Aghghale et al. [44] | Closed-loop poultry supply chain | Poultry supply chain based on a meta-heuristic approach | Multi-task approach, minimizing the supply chain cost | - |
| Jang et al. [31] 2024 | Stochastic programming | Hydrogen supply chain | Execute the sample average approximation | Computational burden is not efficient |
| Niu et al. [23] 2024 | New design for the supply chain network | Including location choices for manufacturing plants | Efficient distribution | Accuracy is not efficient |
| Zulqarnain et al. [34] 2024 | Fuzzy approach | Utilizing aggregation | Efficient management | Accuracy not improved |
| Sesar et al. [21] 2023 | Anomaly at unfolding | Execute unfolding | Waste management | Sensitivity not improved |
| Tsolaki et al. [45] 2023 | Machine Learning methodologies | Assessing transportation parameters | Reducing arrival time | Accuracy not improved |
| Deng et al. [46] 2023 | Robust optimization approach | Identifying challenges | Handling transport services | F1-score not improved |
| Matenga et al. [33] 2022 | Industrial development operations | Executing customer management process | Efficient management | Computational burden not improved |
| Anwer et al. [35] 2022 | Quantitative approach | Considering deficiencies in transportation | Analyzing the primary data | No improvement in minimizing the complexity |
| Fartaj et al. [47] 2020 | Disturbance factors in logistics | Computing the interrelationship in supply chain logistics | Efficient management | No improvement in error reduction |
| Feature Number | Feature | Format | Feature Number | Feature | Format |
|---|---|---|---|---|---|
| 1 | Type | Debit-0, Transfer-1, Payment-2, Cash-3 | 7 | Longitude of location | Numeral |
| 2 | Real days of shipping | Digit | 8 | Discount | Numeral |
| 3 | Planned days of shipment | Digit | 9 | Discount rate | Numeral |
| 4 | Gain for customer order | Numeral | 10 | Total or-der | Numeral |
| 5 | Sales for consumer | Numeral | 11 | Rate of order profit | Numeral |
| 6 | Latitude of location | Numeral | 12 | Order state | 8 different text |
| Feature Number | Target Feature | Explanation | Number of Data Samples for Each Target Category |
|---|---|---|---|
| 1 | Delivery status | 1-On-time, 2-Late delivery | 18,000 |
| 2 | Shipping mode | 1-Standard Class, 2-First Class, 3-Second Class, 4- Same Day | 9000 |
| Shipping | Feature | Explanation | Shipping | Feature | Explanation |
|---|---|---|---|---|---|
| 1 | Customer care calls | Digit | 5 | Product importance | 3 types of word (low, medium, high) |
| 2 | Customer rating | Digit | 6 | Gender | 2 types of word (F,M) |
| 3 | Cost of the product | Numeral | 7 | Discount offered | Numeral |
| 4 | Prior purchases | Digit | 8 | Weight in grams | Numeral |
| Shipping | Target Feature | Explanation | Number of Data Samples for Each Target Category |
|---|---|---|---|
| 1 | Warehouse | 5 categories (A, B, C, D, F) | 1056 |
| 2 | Mode of Shipment | 3 categories (Flight, Ship, Road) | 1760 |
| 3 | Reached On-Time | 2 categories (Late, On-Time) | 2640 |
| Smart Logistics | Feature | Explanation | Smart Logistics | Feature | Explanation |
|---|---|---|---|---|---|
| 1 | Latitude | Numeral | 6 | Humidity | Numeral |
| 2 | Longitude | Numeral | 7 | Traffic Status | 3 categories (Detour, Heavy, Clear) |
| 3 | Inventory_Level | Numeral | 8 | Waiting Time | Numeral |
| 4 | Shipment_Status | 3 categories (Delayed, In Transit, Delivered) | 9 | User Transaction Amount | Numeral |
| 5 | Temperature | Numeral | 10 | User Purchase Frequency | Digit |
| Smart Logistic | Target Feature | Explanation | Number of Data Samples for Each Target Category |
|---|---|---|---|
| 1 | Truck_ID | 10 categories | 100 |
| 2 | Shipment Status | 3 categories (Delayed, In Transit, Delivered) | 300 |
| 3 | Traffic Status | 3 categories (Detour, Heavy, Clear) | 300 |
| 4 | Logistics Delay | 2 categories (Late, On-Time) | 500 |
| Hospital Supply Chain Dataset | Feature | Explanation | Feature Type |
|---|---|---|---|
| 1 | Current Stock | Numeral | Input |
| 2 | Min Required | Numeral | Input |
| 3 | Max Capacity | Numeral | Input |
| 4 | Unit Cost | Numeral | Input |
| 5 | Average Usage Per Day | Numeral | Input |
| 6 | Vendor ID | 3 Categories (V001, V002, V003) | Input |
| 7 | Item Type | 5 Categories (Ventilator, Surgical Machine, IV Drip, X-ray Machine, Gloves) | Input |
| 8 | Restock Lead Time | 3 Categories | Target |
| Pharmaceutical Supply Chain Dataset | Feature | Explanation | Feature Type |
|---|---|---|---|
| 1 | Drug Name | 4 Categories (Metformin, Lisinopril, Insulin, Atrovastatin) | Input |
| 2 | Demand Forecast | Numeral | Input |
| 3 | Optimal Stock Level | Numeral | Input |
| 4 | Restocking Strategy | 3 Categories (Weekly, Monthly, Quarterly) | Target |
| Dataset | Layer | Layer Name | Activation Function | Dimension of Weight Array | Dimension of Bias | Number of Parameters |
|---|---|---|---|---|---|---|
| Shipping for Shipment Mode | 1 | GraphSAGE | Relu | [1, 8, 8] | [8] | 72 |
| 3 | Batch normalization | - | [8] | [8] | 16 | |
| 4 | GraphSAGE | Relu | [1, 8, 5] | [5] | 45 | |
| 6 | Batch normalization | - | [5] | [5] | 10 | |
| 7 | GraphSAGE | Relu | [1, 5, 3] | [3] | 18 | |
| 8 | Batch normalization | - | [3] | [3] | 6 | |
| 9 | GraphSAGE | Relu | [1, 3, 3] | [3] | 12 | |
| 10 | Batch normalization | - | [3] | [3] | 6 | |
| Smart Logistics for Logistics ID | 1 | GraphSAGE | Relu | [1, 10, 10] | [10] | 110 |
| 2 | Batch normalization | - | [10] | [10] | 20 | |
| 3 | GraphSAGE | Relu | [1, 10, 10] | [10] | 110 | |
| 4 | Batch normalization | - | [10] | [10] | 20 | |
| 5 | GraphSAGE | Relu | [1, 10, 10] | [20] | 110 | |
| 6 | Batch normalization | - | [10] | [10] | 20 | |
| 7 | GraphSAGE | Relu | [1, 10, 10] | [10] | 110 | |
| 8 | Batch normalization | - | [10] | [10] | 10 | |
| 9 | GraphSAGE | Relu | [1, 10, 10] | [10] | 110 | |
| 10 | Batch normalization | - | [10] | [10] | 20 |
| Data | Layer | Layer Name | Number of Layers |
|---|---|---|---|
| Shipping (Logistic ID) | 1 | LSTM | 5 |
| 2 | Linear | 1 | |
| Smart Logistics (Shipment Mode) | 1 | LSTM | 5 |
| 2 | Linear | 1 |
| Data | Layer | Layer Name | Activation Function | Output Dimension | Stride Shape | Size of Window | Number of Kernels | Number of Weights |
|---|---|---|---|---|---|---|---|---|
| Shipping (Logistic ID) | 1 | Convolution 1-D | LeakyReLU (alpha = 0.1) | (10, 10, 5) | 1 × 1 | 1 × 5 | 10 | 510 |
| 2 | Convolution 1-D | LeakyReLU (alpha = 0.1) | (10, 10, 5) | 1 × 1 | 1 × 5 | 10 | 502 | |
| Smart Logistics (Shipment Mode) | 1 | Convolution 1-D | LeakyReLU (alpha = 0.1) | (8, 8, 5) | 1 × 1 | 1 × 5 | 8 | 328 |
| 2 | Convolution 1-D | LeakyReLU (alpha = 0.1) | (3, 8, 5) | 1 × 1 | 1 × 5 | 3 | 123 |
| Parameters | Search Space | Optimum Value |
|---|---|---|
| Optimizer of GraphSAGE | Adam, SGD | Adam |
| Cost function of GraphSAGE | MSE, Cross-Entropy | Cross-Entropy |
| Number of Sage layers | 2, 3, 4 | 4 |
| Learning rate of GraphSAGE | 0.1, 0.01, 0.001 | 0.001 |
| Window size | 10, 20, 30 | 20 |
| Optimizer of convolution and LSTM | Adam, SGD | Adam |
| Learning rate of convolution and LSTM | 0.01, 0.001, 0.0001, 0.00001 | 0.0001 |
| Logistics Delay Categories of the DataCo Dataset | H-GSN | GSN | H-GatN | GatN | Shipping Mode Categories of the DataCo Dataset | H-GSN | GSN | H-GatN | GatN |
|---|---|---|---|---|---|---|---|---|---|
| Overall accuracy | 99.9 ± 0.5 | 92.56 ± 1.1 | 94.98 ± 0.6 | 90.45 ± 1.03 | Overall accuracy | 98.7 ± 0.2 | 91.82 ± 2.26 | 92.15 ± 1.98 | 88.65 ± 2.58 |
| Precision | 99.9 ± 0.5 | 92.5 ± 1.3 | 94.9 ± 0.7 | 90.74 ± 1.22 | Precision | 98.7 ± 0.3 | 91.8 ± 2.3 | 91.1 ± 1.5 | 86.6 ± 2.6 |
| F1-score | 98.9 ± 0.3 | 92.5 ± 0.9 | 94.9 ± 0.5 | 90.42 ± 1.35 | F1-score | 98.7 ± 0.4 | 91.8 ± 2.4 | 92.1 ± 1.4 | 86.6 ± 2.7 |
| Recall | 99.9 ± 0.4 | 92.5 ± 0.9 | 94.9 ± 0.4 | 90.08 ± 1.26 | Recall | 98.7 ± 0.2 | 91.8 ± 2.3 | 91.1 ± 1.5 | 86.6 ± 2.3 |
| Logistics Reached Time of Shipping Database | H-GSN | H-GatN | Logistics Mode of Shipment of Shipping Database | H-GSN | H-GatN | Logistics Warehouse location of Shipping Database | H-GSN | H-GatN |
|---|---|---|---|---|---|---|---|---|
| Overall accuracy | 99.4 ± 0.1 | 96.54 ± 0.55 | Overall accuracy | 96.13 ± 0.21 | 85.46 ± 2.34 | Overall accuracy | 100 ± 0 | 97.28 ± 0.84 |
| Precision | 99.4 ± 0.7 | 96.18 ± 1.01 | Precision | 96.1 ± 0.32 | 85.4 ± 2.8 | Precision | 100 ± 0 | 97.2 ± 0.7 |
| F1-score | 99.4 ± 0.9 | 96.03 ± 1.05 | F1-score | 96.1 ± 0.87 | 85.4 ± 2.7 | F1-score | 100 ± 0 | 97.2 ± 0.6 |
| Recall | 99.4 ± 0.5 | 96.19 ± 1.42 | Recall | 96.1 ± 0.65 | 85.4 ± 2.3 | Recall | 100 ± 0 | 97.2 ± 0.7 |
| Smart Logistics (Logistics ID) | H-GSN | H-GatN | Smart Logistics (Shipment Status) | H-GSN | H-GatN | Smart Logistics (Logistics Delay) | H-GSN | H-GatN |
|---|---|---|---|---|---|---|---|---|
| Overall accuracy | 97.8 ± 0.12 | 88.46 ± 1.31 | Overall accuracy | 100 ± 0 | 90.4 ± 2.8 | Overall accuracy | 96.35 ± 0.12 | 80.2 ± 1.4 |
| Precision | 97.8 ± 0.18 | 87.18 ± 1.02 | Precision | 100 ± 0 | 89.3 ± 1.9 | Precision | 96.38 ± 0.23 | 80.2 ± 1.1 |
| F1-score | 97.8 ± 0.21 | 87.03 ± 1.42 | F1-score | 100 ± 0 | 89.2 ± 2.5 | F1-score | 96.32 ± 0.47 | 80.2 ± 1.3 |
| Recall | 97.8 ± 0.34 | 87.19 ± 0.98 | Recall | 100 ± 0 | 89.26 ± 2.35 | Recall | 96.35 ± 0.79 | 80.2 ± 0.98 |
| Method | Logistic ID Smart Logistics Database | Shipment Status Smart Logistics Database | Logistic Delay Smart Logistics | Traffic Status Smart Logistics Database |
|---|---|---|---|---|
| H-GSN | 97.9 | 100 | 96.35 | 100 |
| GIN-based graph network [58] | 94.7 | 94.7 | 93.95 | 94.21 |
| Non-graph LSTM [53] | 94.5 | 94.5 | 93.51 | 94.23 |
| Chebyshev convolutional-based method [39] | 94.98 | 95.24 | 95.64 | 95.12 |
| Transformer network [59] | 91.4 | 91.4 | 92.1 | 92.1 |
| Random Forest [54] | 90.50 | 90.10 | 87.56 | 89.34 |
| GNN-based [55] | 81.23 | 92.36 | 90.43 | 91.82 |
| BiLSTM + SVM | 79.94 | 80.23 | 78.35 | 80.45 |
| KNN [56] | 63.44 | 78.23 | 62.64 | 76.43 |
| Logistic regression | 66.67 | 68.32 | 63.54 | 68.21 |
| XGBoost [57] | 62.42 | 74.06 | 61.13 | 73.15 |
| Method | Pharmaceutical Supply Chain | Hospital Supply Chain |
|---|---|---|
| H-GSN | 96.5 | 96.6 |
| GIN-based graph network [58] | 94.7 | 94.6 |
| Non-graph LSTM [53] | 94.3 | 94.3 |
| Chebyshev convolutional-based method [39] | 94.98 | 94.52 |
| Transformer network [59] | 91.3 | 91.2 |
| Random Forest [54] | 90.50 | 89.30 |
| GNN-based [55] | 81.23 | 80.40 |
| BiLSTM + SVM | 80.54 | 80.32 |
| KNN [56] | 63.44 | 62.37 |
| Logistic regression | 66.67 | 65.37 |
| XGBoost [57] | 62.42 | 60.89 |
| SupplyGraph (With Pre-Defined Edges in Dataset) | H-GSN | H-GatN | GSN | GatN |
|---|---|---|---|---|
| Product category in nodes (5 product codes) | 100 | 95.32 | 86.71 | 84.18 |
| Product category relation in edges (4 product codes) | 98.8 | 89.43 | 83.88 | 83.23 |
| Manufacturing plant relation in edges (25 logistics category corresponding to plant codes) | 96.2 | 85.32 | 84.66 | 82.92 |
| Layer Type | Activation Function | Output Shape | Kernel Dimension | Stride Size | Padding | Number of Filters |
|---|---|---|---|---|---|---|
| Fully Connected | (5,50,8) | |||||
| Reshape layer | (5,50,8) | |||||
| 1st 2-D Transposed Conv | Leaky Relu (coeff = 0.1) | (5,50,8) | 1*4 | 1*1 | yes/same | 8 |
| 2nd 2-D Transposed Conv | Leaky Relu (coeff = 0.1) | (10,100,8) | 1*4 | 2*2 | yes/same | 8 |
| Layer Type | Activation Function | Output Shape | Kernel Dimension | Stride Size | Padding | Number of Kernels |
|---|---|---|---|---|---|---|
| 1st 2-D Conv | Leaky Relu (coeff = 0.1) | (1,5,50,4) | 1*4 | 2*2 | yes/same | 4 |
| Dropout layer (0.3) | (1,5,50,4) | |||||
| 2nd 2-D Conv | Leaky Relu (coeff = 0.1) | (1,5,50,4) | 1*4 | 1*1 | yes/same | 4 |
| Dropout layer (0.3) | (1,5,50,4) | |||||
| Flatten | (1,1000) | |||||
| Dense Layer | (1,500) | |||||
| Dense Layer | (1,1) |
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Share and Cite
Khaleghi, M.; Pashootanizadeh, F.; Khaleghi, N.; Sheykhivand, S.; Danishvar, S.; Ghezavati, V. Smart Logistics Model for Supply Chain Management via Brain-Inspired Geometric Deep Networks. Biomimetics 2026, 11, 440. https://doi.org/10.3390/biomimetics11060440
Khaleghi M, Pashootanizadeh F, Khaleghi N, Sheykhivand S, Danishvar S, Ghezavati V. Smart Logistics Model for Supply Chain Management via Brain-Inspired Geometric Deep Networks. Biomimetics. 2026; 11(6):440. https://doi.org/10.3390/biomimetics11060440
Chicago/Turabian StyleKhaleghi, Mehdi, Farshad Pashootanizadeh, Nastaran Khaleghi, Sobhan Sheykhivand, Sebelan Danishvar, and VahidReza Ghezavati. 2026. "Smart Logistics Model for Supply Chain Management via Brain-Inspired Geometric Deep Networks" Biomimetics 11, no. 6: 440. https://doi.org/10.3390/biomimetics11060440
APA StyleKhaleghi, M., Pashootanizadeh, F., Khaleghi, N., Sheykhivand, S., Danishvar, S., & Ghezavati, V. (2026). Smart Logistics Model for Supply Chain Management via Brain-Inspired Geometric Deep Networks. Biomimetics, 11(6), 440. https://doi.org/10.3390/biomimetics11060440

