Rare Splice Variants in Long Non-Coding RNAs
Abstract
:1. Introduction
2. Results
3. Concluding Remarks
4. Materials and Methods
Acknowledgments
Author Contributions
Conflicts of Interest
Abbreviations
lncRNA | long non-coding RNA |
lincRNA | long intergenic non-coding RNA |
rRNA | ribosomal RNA |
RPKM | reads per kilobase per million mapped reads |
BL | Burkitt lymphoma |
FL | follicular lymphoma |
DLBCL | diffuse large B cell lymphoma |
References
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Genes | Transcripts | Exons | (Avg.) | Introns | (Avg.) | |
---|---|---|---|---|---|---|
Ensembl 60 | 1443 | 1703 | 4921 | 2.89 | 3218 | 1.88 |
Cabili 2011 | 8263 | 14,353 | 33,045 | 2.30 | 18,607 | 1.30 |
NONCODE 2016 | 160,376 | 233,696 | 536,111 | 2.29 | 305,771 | 1.31 |
GENCODE v7 | 9580 | 14,984 | 42,060 | 2.81 | 28,998 | 1.94 |
GENCODE v24 | 15,941 | 28,031 | 68,457 | 2.44 | 45,016 | 1.61 |
Genes | Transcripts | Exons | (Avg.) | Introns | (Avg.) | |
---|---|---|---|---|---|---|
v7 | 3296 | 4563 | 12,584 | 2.76 | 8394 | 1.84 |
v19 | 5257 | 7487 | 18,774 | 2.51 | 12,010 | 1.60 |
v24 | 4961 | 7318 | 18,685 | 2.55 | 12,202 | 1.67 |
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Sen, R.; Doose, G.; Stadler, P.F. Rare Splice Variants in Long Non-Coding RNAs. Non-Coding RNA 2017, 3, 23. https://doi.org/10.3390/ncrna3030023
Sen R, Doose G, Stadler PF. Rare Splice Variants in Long Non-Coding RNAs. Non-Coding RNA. 2017; 3(3):23. https://doi.org/10.3390/ncrna3030023
Chicago/Turabian StyleSen, Rituparno, Gero Doose, and Peter F. Stadler. 2017. "Rare Splice Variants in Long Non-Coding RNAs" Non-Coding RNA 3, no. 3: 23. https://doi.org/10.3390/ncrna3030023