Data-Mining Techniques: A New Approach to Identifying the Links among Hybrid Strains of Pleurotus with Culture Media
Abstract
:1. Introduction
2. Materials and Methods
2.1. Mushroom Strains
2.2. Chemical Dedikaryotization
2.3. Identification of Neohaplonts’ Compatibility Types and Production of Reconstituted Strains
2.4. Preparation of Mixtures of Culture Media
2.5. Determination of Mycelial Area
2.6. Mathemical Model
2.7. Biomass Production
2.8. Exopolysaccharides Production
2.9. Statistical Analysis
2.9.1. K-Medoids Clustering
- Select a comparison function between objects. For example, if we are dealing with qualitative variables, we usually use the Euclidean distance;
- 2.
- Calculate the Global Matrix of similarity or difference, that is, the distance matrix;
- 3.
- Select the K-farthest patterns as initial attractors;
- 4.
- Calculate and store the similarity or difference between each pattern and each of the K-attractor objects;
- 5.
- Partition the space into groups, assigning each pattern to the closest attractor group;
- 6.
- Calculate, for each defined group, its medoid;
- 7.
- Consider the newly calculated medoids as new attractor patterns;
- 8.
- Return to step (4);
- 9.
- Terminate when the set of medoids is identical to that of the previous iteration.
2.9.2. PCA Biplot
2.9.3. Association Rules
3. Results and Discussion
3.1. Clustering K-Medoids Algorithm for Mycelial and Cultural Characteristics of the Hybrid Strains of Pleurotus
3.2. PCA Biplot Algorithm for Mycelial and Cultural Characteristics of the Hybrid Strains of Pleurotus
3.3. Association Rules Algorithm for Mycelial and Cultural Characteristics of Hybrid Strains of Pleurotus
4. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Culture Media | Cluster 1 | Cluster 2 | Cluster 3 | Cluster 4 |
---|---|---|---|---|
M1 + L1 | 33 | 17 | ||
M2 + L2 | 16 | 34 |
Culture Media | Cluster 1 | Cluster 2 | Cluster 3 | Cluster 4 |
---|---|---|---|---|
M1 + L1 | 13 | 6 | 14 | 17 |
M2 + L2 | 14 | 12 | 16 | 8 |
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Guevara-Viejó, F.; Valenzuela-Cobos, J.D.; Vicente-Galindo, P.; Galindo-Villardón, P. Data-Mining Techniques: A New Approach to Identifying the Links among Hybrid Strains of Pleurotus with Culture Media. J. Fungi 2021, 7, 882. https://doi.org/10.3390/jof7100882
Guevara-Viejó F, Valenzuela-Cobos JD, Vicente-Galindo P, Galindo-Villardón P. Data-Mining Techniques: A New Approach to Identifying the Links among Hybrid Strains of Pleurotus with Culture Media. Journal of Fungi. 2021; 7(10):882. https://doi.org/10.3390/jof7100882
Chicago/Turabian StyleGuevara-Viejó, Fabricio, Juan Diego Valenzuela-Cobos, Purificación Vicente-Galindo, and Purificación Galindo-Villardón. 2021. "Data-Mining Techniques: A New Approach to Identifying the Links among Hybrid Strains of Pleurotus with Culture Media" Journal of Fungi 7, no. 10: 882. https://doi.org/10.3390/jof7100882