A Multi-Scale Model for the Spread of HIV in a Population Considering the Immune Status of People
Abstract
:1. Introduction
2. Materials and Methods
2.1. Population Model: Sexual Contact Network
- 1.
- Infection dynamics by the virus in the immunological scale.
- 2.
- Defines the virus propagation in the population scale, considering aspects from the immunological scale.
2.2. Model for HIV Infection in the Immunological Scale
3. Results
3.1. Local Stability Analysis of the Immunological Model
3.2. Simulation of the Immunological Model
3.3. Coupling Algorithm of the Immunological and Population Scales
- 1.
- The network was constructed by beginning with the random values [38,39,40] shown in the following, which seeks for each individual i, for , from the network to have a different immune system. Additionally, for the values of the other parameters used in the system of differential equations that describe the immunological scale, those described in Table 2 were used.
- (a)
- Initial number of healthy CD4 T cells in the i-th person per mm: .
- (b)
- Initial number of inactive CD8 T cells in the i-th person per mm: .
- (c)
- Values of infected CD4 T cells, active CD8 T cells, infectious and non-infectious viral particles will be null, given that it is considered that the th person is still not infected by the virus, that is, .
- (d)
- Production rate of healthy cells of the i-th person: .
- (e)
- Infection probability of the healthy cells of the i-th person: .
- (f)
- Production rate of viral particles of the i-th person: .
Then, a vertex from the network is chosen randomly as the first infected and is assigned a random viral load between 1 and 1000 vir/mm[41]. With the aforementioned, the network is created, obtaining the initial state at . - 2.
- From the corresponding initial condition, we solve the system of differential equations of the immunological system (7) for each vertex i during one unit of time, saving the numerical solutions , , , , and ; therefore, we have the immunological status of each individual in the population during that unit of time. Additionally, the final value of each of the numerical solutions will be used as the initial condition in the following iteration. Furthermore, we saved the number of susceptible subjects, carriers with ART and carriers without ART at the end of the iteration.
- 3.
- Based on the numerical solutions, the following decisions were made:
- (a)
- If the i-th person is an HIV carrier and presents a number of healthy CD4 T cells below 350 cell/mm, a random probability of accessing to ART is assigned, if it is >, it is established to use ART, so that a random value is assigned for and between .
- (b)
- If the i-th person is an HIV carrier already using ART, a random probability of therapy abandonment is assigned, if it is <, it is established that the individual leaves ART, that is .
This is why in the simulations that will be presented ahead in different iterations, the state of the vertices will vary from carriers with therapy to carriers without therapy, and vice versa. - 4.
- The transmission process considers different factors. If the i-th person is an HIV carrier, the decision is made randomly whether to have a sexual encounter with only one of their susceptible “neighbors” (another susceptible vertex sharing an edge). If the random decision was affirmative, the infected person is partnered with one of their susceptible sex partners, then, the probability of transmitting the infection from the infected person i to the susceptible person j is given by (taken from [16]), where represents the average degree (associated with the potential number of sex partners) and is the infection probability through sexual contact; the probability is taken from [40] and is shown in Table 3 according to the values of vir/mm.Finally, if person j becomes infected, an initial viral load is assigned with 10% of the load owned by the person i who caused the infection.
- 5.
- At the end of each iteration, the prevalence was calculated, as the rate between the number of HIV carriers with or without therapy and the total number of people from the network, that is,
3.4. Simulation of the Coupled Model
4. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
Abbreviations
HIV | Human Immunodeficiency Virus |
AIDS | Acquired immune deficiency syndrome |
ART | Antiretroviral therapy |
RTI | Reverse transcriptase inhibitors |
PI | Protease Inhibitors |
LAE | locally asymptotically stable |
Sym | Symbol |
Appendix A. Demonstration of Propositions and Basic Reproduction Number
- 1.
- There are two positive solutions, that is, two endemic equilibriums if and satisfy the conditions to obtain (see (8)); that is:
- 2.
- There are no positive solutions, that is, there is no endemic equilibrium if and fulfill:
- 3.
- There is a single endemic equilibrium point if and fulfill:
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Sym. | Description | Value |
---|---|---|
k | Average number of sex partners | 2, 4 and 10 |
Distribution of sex partners | 3.4 | |
Number of susceptible young people, carriers with ART, and carriers without ART | 25 and 1000 | |
Discrete simulation time in weeks | 200 | |
Number of iterations on the network | Varies | |
Number of young people susceptible of acquiring the virus | Varies | |
Number of young people carriers of the virus with ART | Varies | |
Number of young people carriers of the virus without ART | Varies |
Sym. | Description | Value | Ref. |
---|---|---|---|
Production rate of healthy CD4 T cells | 10 mm d | [32,33] | |
CD4 T cells infection probability | 2.5 × 10 mm d | [33] | |
Death rate of the uninfected CD4 T cells | 1 × 10 d | [32] | |
Death rate of infected CD4 T cells | 0.26 d | [32,33] | |
N | Production rate of viral particles | 500 d | [32] |
c | Rate of virus elimination | 2.4 d | [33] |
Activation probability of CD8 T cells | 2 × 10 mm d | - | |
Replication probability of the active CD8 T cells | 5 × 10 mm d | [33] | |
Death rate of CD8 T cells | 0.1 mm d | [32,33] | |
Probability of the active CD8 T cells eliminating the infected CD4 T cells | 2 × 10 mm d | [33] | |
Production rate of inactive CD8 T cells | 5 mm d | [33] | |
Effectiveness of RTI | - | - | |
Effectiveness of PI | - | - | |
Initial value of the healthy CD4 T cells | 1000 mm | [33] | |
Initial value of infected CD4 T cells | 0 mm | [33] | |
Initial value of inactive CD8 T cells | 0 mm | [33] | |
Initial value of active CD8 T cells | 1 mm | [33] | |
Initial infectious viral load | 1 × 10 mm | [33] | |
Initial non-infectious viral load | - | - |
Type of Risk | Viral Load Range | Infection Probability |
---|---|---|
Low risk | ||
Medium risk | ||
High risk |
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Vásquez-Quintero, S.d.A.; Toro-Zapata, H.D.; Prieto-Medellín, D.A. A Multi-Scale Model for the Spread of HIV in a Population Considering the Immune Status of People. Processes 2021, 9, 1924. https://doi.org/10.3390/pr9111924
Vásquez-Quintero SdA, Toro-Zapata HD, Prieto-Medellín DA. A Multi-Scale Model for the Spread of HIV in a Population Considering the Immune Status of People. Processes. 2021; 9(11):1924. https://doi.org/10.3390/pr9111924
Chicago/Turabian StyleVásquez-Quintero, Sol de Amor, Hernán Darío Toro-Zapata, and Dennis Alexánder Prieto-Medellín. 2021. "A Multi-Scale Model for the Spread of HIV in a Population Considering the Immune Status of People" Processes 9, no. 11: 1924. https://doi.org/10.3390/pr9111924
APA StyleVásquez-Quintero, S. d. A., Toro-Zapata, H. D., & Prieto-Medellín, D. A. (2021). A Multi-Scale Model for the Spread of HIV in a Population Considering the Immune Status of People. Processes, 9(11), 1924. https://doi.org/10.3390/pr9111924