1. Introduction
Many pathogens circulate in multiple antigenic or virulence variants that coexist, compete, and sometimes synergise within the same host population [
1]. Examples range from influenza and dengue serotypes to antibiotic-resistant bacterial strains and emerging viral variants [
2,
3]. In such settings, individuals may experience repeated infections with different strains [
4], and co-infection can alter disease severity [
5], transmission, and removal rates [
6]. Capturing these mechanisms in a mathematically tractable way requires going beyond single-strain SIR/SIS models and incorporating both competition between primary strains and the possibility of a co-infected class [
7].
Deterministic two-strain SIS models with competition have been extensively studied, typically under bilinear incidence and in the absence of co-infected hosts [
8,
9]. Classical results show that small differences in effective reproduction numbers can lead to competitive exclusion of the weaker strain, whereas specific non-linearities or additional structure can sustain coexistence [
10,
11]. When co-infection is allowed, the dynamics become richer: the co-infected class may act as a bridge for transmission or as a dead end, and the long-term behaviour depends in a delicate way on how co-infection modifies infectivity and removal [
12]. However, these deterministic analyses implicitly assume a homogeneous, time-invariant environment and smooth changes in transmission, which is rarely realistic [
13].
In practice, transmission of each strain is affected by several sources of randomness [
14,
15]. First, behavioural changes and saturation effects reduce the per-capita infection rate when either the pool of susceptibles or the number of infectives becomes large [
16,
17]. A natural way to represent such effects is to replace bilinear incidence by a Crowley–Martin-type term, where the force of infection saturates simultaneously in susceptibles and infectives [
18]. Second, contact patterns and control measures (e.g., non-pharmaceutical interventions, changes in testing or treatment) can switch abruptly between regimes on a time scale comparable to the epidemic dynamics [
19,
20]. This motivates the use of Markovian regime switching to model the temporal variability of transmission rates. Third, epidemics are subject to both continuous fluctuations (background noise, demographic variability) and sudden shocks such as super-spreading events, importation bursts, or abrupt loss of immunity [
21]. Mathematically, these effects are well captured by hybrid stochastic systems with multiplicative Brownian noise and Lévy jumps.
There is by now a substantial literature on stochastic epidemic models with either Brownian noise or Lévy jumps, and on regime-switching SDE models where parameters such as transmission or removal rates follow a finite-state Markov chain [
22,
23]. However, most existing works focus on single-strain models, often with bilinear incidence, and treat either diffusion or jump perturbations but not both [
24]. The results for multi-strain competition models with co-infection are predominantly deterministic, and the few stochastic extensions usually neglect regime switching and jump noise, or impose simplified linear incidence and absence of co-infected classes. To the best of our knowledge, there is no rigorous analysis of a hybrid two-strain SIS co-infection model that simultaneously incorporates Crowley–Martin behavioural saturation, Markovian switching, and Lévy-type jump perturbations.
The aim of this paper is to fill this gap. We formulate and analyse a four-dimensional hybrid stochastic SIS model describing the interaction of two primary strains and a co-infected class. The compartments are the susceptible population S, the individuals infected only by the low-virulence strain , those infected only by the high-virulence strain , and the co-infected class . Transmission of each primary strain occurs through a Crowley–Martin incidence term that saturates in both susceptibles and infectives, while co-infection is represented by bilinear terms coupling and . The transmission rates and are modulated by a finite-state continuous-time Markov chain describing random regime changes in the environment, behaviour, or control intensity. On top of this deterministic skeleton, we superimpose compartment-specific multiplicative Brownian noise and common compensated Poisson jumps, modelling respectively continuous fluctuations and rare large shocks in the epidemic dynamics.
From a mathematical viewpoint, the resulting model is a non-linear regime-switching Lévy-driven SDE system with non-globally Lipschitz drift and non-linear, state-dependent diffusion and jump coefficients. The Crowley–Martin incidence and the co-infection terms prevent the direct use of standard linear-growth conditions, while the combination of switching, diffusion, and Lévy noise complicates the long-term analysis. Our first task is therefore to establish a robust well-posedness and pathwise control theory for this hybrid system. We prove that, under natural moment and integrability assumptions on the jump amplitudes and a mild structural condition on the removal rates, the model admits a unique global positive strong solution for any non-negative initial condition. Using a polynomial Lyapunov function based on the total population , we show that all moments of of sufficiently high order remain uniformly bounded in time, and that almost surely. In parallel, we derive strong laws of large numbers for the Brownian and Lévy martingales generated by the model, which ensure that time-averaged stochastic integrals vanish almost surely and allow us to reduce the asymptotic analysis to deterministic averaged quantities.
On this pathwise foundation, we develop a logarithmic Lyapunov framework for the primary infective classes and . By applying Itô’s formula to and using the moment bounds and martingale strong laws, we obtain almost-sure upper and lower bounds on the long-time growth rates . These bounds are expressed in terms of four effective growth parameters and two matrices of interaction coefficients and . The parameters combine the regime-switching structure, the Crowley–Martin saturation, and explicit corrections induced by Brownian and Lévy noise, while the entries of A and B quantify how the presence of each strain reduces the growth of the other through behavioural saturation and removal. This leads to sharp and fully explicit criteria for extinction, competitive exclusion, and coexistence in mean of the two primary strains, and to a transparent characterisation of the long-term mean burden of the co-infected class.
The main contributions of this work can be summarised as follows:
We formulate a hybrid four-compartment SIS co-infection model that simultaneously incorporates Crowley–Martin behavioural saturation, Markovian regime switching in transmission rates, and Lévy jump perturbations, thus providing a coherent modelling framework for two-strain competition in a randomly switching and shock-prone environment.
We prove pathwise sublinear growth of the total population and strong laws of large numbers for the associated Brownian and Lévy martingales.
Using logarithmic Lyapunov functionals and the balance relations of the model, we derive new noise-corrected threshold quantities and interaction matrices , and we express extinction, single-strain persistence with exclusion of the competitor, and coexistence in mean of both primary strains in terms of explicit inequalities involving these quantities.
We show that the co-infected class admits a well-defined long-term mean burden determined by the time-averaged co-infection rates, thereby quantifying how the interaction between the two primary strains is reflected in the mean level of co-infection. Numerical simulations based on an Euler–Maruyama scheme with regime switching and compensated Poisson jumps illustrate the different asymptotic regimes and confirm the sharpness of the theoretical thresholds.
To our knowledge, this is the first work to obtain rigorous extinction, exclusion, and coexistence-in-mean results for a multi-strain SIS co-infection model under the combined influence of Crowley–Martin incidence, Markovian regime switching, and Lévy jumps. The methodology developed here, in particular the interplay between polynomial and logarithmic Lyapunov functions and martingale strong laws in a hybrid stochastic environment, is of independent interest and can be adapted to other multi-strain and co-infection systems with non-linear incidence and hybrid noise.
Finally, we briefly outline the organisation of the paper. In
Section 2, we introduce the deterministic two-strain SIS co-infection model, the Crowley–Martin incidence structure, and its hybrid stochastic extension with regime switching, Brownian noise, and Lévy jumps.
Section 3 is devoted to the well-posedness analysis and establish pathwise sublinear growth together with strong laws of large numbers for the driving martingales. In
Section 4, we develop the logarithmic Lyapunov framework, introduce the effective growth parameters
and the interaction matrices
, and derive sharp criteria for extinction, competitive exclusion, and coexistence in the mean of the two primary strains, together with the induced behaviour of the co-infected class. The theoretical results are illustrated and validated by numerical experiments in
Section 5, where we simulate the hybrid system under different parameter regimes and noise configurations.
4. Long-Term Behaviour of the Hybrid Stochastic Co-Infection Model
In this section, we derive criteria for the long-term behaviour of the three infectious subpopulations
,
and
in the hybrid stochastic co-infection system (
5). Throughout, we keep the standing assumptions of
Section 3, so that global positivity and the uniform moment bounds of Lemma 2 and Theorem 1 are in force.
To control logarithmic Lyapunov functionals, we impose an additional integrability condition on the jump amplitudes.
Assumption 4. For each we have The multiplicative Brownian noise and Lévy jumps induce the standard logarithmic corrections. For each compartment
define
In particular,
,
and
are the logarithmic corrections associated with the infectious classes.
For the infectious populations, we denote the total linear removal rates by
We also quantify the range of the regime-dependent transmission rates for the two primary strains: for each
set
As in the deterministic analysis, the linearisation at the DFE shows that the thresholds are governed by the two primary infections. We encode the balance between infection, removal and stochastic damping into four real parameters
:
Thus,
and
, with
corresponding to the least favourable regimes for infection, and
to the most favourable ones.
We collect these coefficients in the
matrices
and
Clearly all entries of
A and
B are strictly positive whenever
and
.
For any nonnegative process
f we use the notation
for its time average.
4.1. Balance Relations and Logarithmic Inequalities
We first record a balance relation for the total population .
Lemma 3. Under Assumptions 1–4, the process satisfieswhere almost surely as . In particular,Moreover, for any sequence such that , , and converge, the limits satisfy Proof. Summing the four equations in (
5) and using the cancellation of the infection and co-infection terms
, we obtain
where
Integrating from 0 to
t and dividing by
t yields
where
Using Theorems 2 and 3, both stochastic averages vanish almost surely, so
as
. Using
, we may rewrite the identity as
which is (
16).
Since
, we have
, and dropping the nonpositive terms
in (
16) gives
Taking the limsup as
and using
,
almost surely (Theorems 1–3) yields
which is (
17).
Finally, let
be such that all time averages converge. Passing to the limit along
in (
16) and using again
and
almost surely gives
Since
this is equivalent to (
18). □
We next derive the key inequalities for and . For the co-infected class , we work with a linear balance rather than a logarithmic estimate.
Lemma 4. Under Assumptions 1–4, there exist processes such thatand, for all ,Moreover, the co-infected class satisfies the linear balanceso thatwhenever the limits exist. In particular, in the bilinear case , with , the mean burden of co-infection is controlled by the long-term time average of via Proof. We first prove the logarithmic inequalities for and , then derive the linear balance for .
Recalling the
-equation in (
5),
and the definition (
10) of
, we obtain
In the bilinear case
this simplifies to
Integrating from 0 to
t and dividing by
t gives
where
is a local martingale.
Using Theorems 2 and 3 (applied with the integrands
and the integrable function
guaranteed by Assumption 4), we have
almost surely as
. Therefore, we can write
with
and
as
. Thus (
25) becomes
where
almost surely.
An entirely analogous computation for
yields
with
almost surely.
from above and below in terms of the time averages of
S,
,
and
.
By definition of the Crowley–Martin incidence,
and similarly for
. Using
and
, we obtain the bounds
whenever
. A similar inequality holds for
with
.
The rational factor
is bounded above and below by positive constants on compact subsets of
, and the sublinear growth of the solution from Theorem 1 ensures that
. A standard localisation argument (stopping times at large values of
) combined with the uniform
r-moment bound of Lemma 2 then shows that the time averages of this factor remain bounded almost surely. Consequently, there exist constants
such that
up to an error whose contribution to the time average can be absorbed into
. Since we are only interested in the sign of the coefficients, it suffices to work with the rougher bounds
and similarly for the second strain. Substituting the balance relation (
18) for
, we obtain, after straightforward algebra, time-averaged bounds of the form
where the remainder terms
and
collect contributions involving
and localisation errors, and satisfy
by the uniform moment bounds and Theorem 1. The same arguments applied to
yield
with
almost surely as
.
Step 3: Collecting the inequalities. Substituting the upper bound (
29) into (
26), and recalling the definition of
in (
13), we obtain
where
almost surely. This yields (
19) with the choices of
and
in (
15). The lower bound (
20) is obtained in the same way from (
30), which leads to the constants
in (
14) and to a remainder
with
.
The bounds (
21) and (
22) follow analogously by combining (
27) with (
31) and (
32). The explicit forms of
in (
14) and (
15) arise by grouping the coefficients of
and
and absorbing all error terms into
, which again vanish almost surely as
.
Step 4: Linear balance for . Finally, consider the
-equation in (
5):
Integrating from 0 to
t and dividing by
t gives
where
Using Theorems 2 and 3,
almost surely as
. Moreover,
almost surely by Theorem 1 and the bound
. Taking limits along any sequence
for which the time averages converge yields
which is (
24). The convergence (
23) is just the same identity written with
. □
The inequalities (
19)–(
22) together with the balance identity (
23) are the basic tools to establish extinction, competitive exclusion, and coexistence regimes for the two primary pathogens and the co-infected class under the combined influence of regime switching, Brownian fluctuations and Lévy jumps.
4.2. Extinction of Both Strains and Co-Infection
We first identify a parameter regime in which both primary infectious strains die out almost surely and the susceptible class converges, in time average, to the carrying capacity . In this regime, the co-infected class also vanishes in the long run, both pathwise and in mean.
Theorem 4 (Simultaneous extinction of
,
and
)
. Assume that Assumptions 1–4 hold, and thatwhere are given by (13). Suppose, in addition, that the co-infection terms are nonnegative, satisfy for , and have at most linear growth:for some constant . Then, for any initial condition with , , the solution of (5) satisfiesandIf and/or , the corresponding infectious component remains identically zero and the remaining ones converge to zero almost surely as above. Proof. We split the argument into four steps.
Step 1: Exponential extinction of and . From the upper logarithmic inequalities (
19)–(
21) we have, for all
,
where
and
almost surely as
(Lemma 4). Since all time averages
are nonnegative, we may drop the negative terms to obtain the simpler bounds
Taking the upper limit and using
almost surely gives
Fix
so small that
and
. For almost every
there exists
such that, for all
,
Hence, for
,
with
and
. In particular,
and
almost surely as
.
Step 2: Vanishing time averages of and . Let
be such that (
34) holds. Then
since the tail integral is bounded by
. An analogous estimate holds for
. Consequently,
for almost every
. Thus
Step 3: Extinction and vanishing time average of . Set
By (
33) and the result of Step 2,
Thus
On the other hand, the
-equation in (
5) reads
Integrating from 0 to
t, dividing by
t, and arguing as in the proof of Lemma 4, we obtain the balance relation
where
Using Theorems 2 and 3,
almost surely as
, and by Theorem 1 we have
almost surely. Passing to the limit as
and using (
35) yields
so
We now prove the pathwise extinction of
. The equation for
is linear in
with multiplicative noise and an inhomogeneous forcing term
that tends to zero exponentially fast (by (
34) and the linear growth bound (
33)). Let
denote the Doléans-Dade exponential solving the homogeneous linear SDE
By standard variation-of-constants for linear jump-diffusions,
Applying Itô’s formula to
and using the definition of
in (
10) yields
where
is a martingale with
bounded almost surely. By the strong law of large numbers for Lévy martingales,
hence
Thus there exist random constants
,
and a random time
such that
Consequently,
On the other hand, by (
34) and the growth bound (
33), there exist random constants
and
such that
with
(since
and
). For
, we obtain
for suitable random constants
. If
, the integral is of order
; if
, it is of order
t. In all cases,
because
. Hence,
almost surely as
.
Step 4: Time-average limit for S. We already know that
,
and
almost surely. Inserting these limits into the balance identity (
18) of Lemma 3 yields
If and/or , the corresponding component remains identically zero, since the noise is purely multiplicative in that component. The preceding arguments then apply verbatim to the remaining infectious classes and to , and the same conclusions follow. □
Remark 2. If the transmission rates are regime-independent, , then and all four parameters coincide:with , and as in (10). In this case, the Crowley–Martin denominators in the incidence terms can only reduce the effective infection pressure, so the condition is sufficient (though not necessary) for extinction of the ith primary strain and, consequently, for extinction of the co-infected class as well. 4.3. Single-Strain Persistence, Exclusion of the Other Strain and Co-Infection
We next characterise parameter regimes in which one primary strain persists in the mean while the other dies out. In these regimes, the co-infected class also becomes extinct, both pathwise and in mean. The picture mirrors the deterministic competitive exclusion principle, but with thresholds shifted by the stochastic corrections and the regime switching.
As in Theorem 4, we assume that the co-infection terms
are nonnegative, vanish when either primary strain is absent, and have at most linear growth:
for some constant
.
Theorem 5 (Single-strain persistence and exclusion of the other strain and co-infection)
. Assume that Assumptions 1–4 hold, and that and are defined as in (14) and (15). Then:- (i)
If and , then and there exists an almost surely finite random constant such that Thus, strain 1 is persistent in mean, while strain 2 and the co-infected class become extinct almost surely.
- (ii)
If and , then and there exists an almost surely finite random constant such that Thus, strain 2 is persistent in mean, while strain 1 and become extinct almost surely.
Proof. We give a detailed argument for case (i); the proof of case (ii) is completely symmetric with the indices 1 and 2 interchanged.
Step 1: Extinction of and vanishing time average. The derivation of the logarithmic inequalities in Lemma 4 can be carried out both with and with as lower and upper bounds on the regime-dependent transmission rate . Using in the upper estimate, we obtain an inequality of the form
for some constants
, where
is given by (
12) and
almost surely as
. The exact expression of the coefficients
is immaterial; what matters is that they are strictly positive and depend only on the model parameters.
Since
, we can drop the negative terms and obtain
Taking the upper limit and using
yields
Thus,
almost surely as
. As in the proof of Theorem 4, the uniform
r-moment bound for
(Lemma 2) and dominated convergence imply
Step 2: Extinction of and vanishing time average. Write
. By assumption (
36) and Step 1,
and
almost surely as
. The balance relation (
23) from Lemma 4 reads
where the error term
almost surely is the contribution of the martingale parts. Using
, Step 1, and the uniform
r-moment bound, we obtain
and hence
For the pathwise behaviour, the
-equation is a linear Lévy-driven SDE with negative drift
and a forcing term
that tends to zero and is square-integrable on
. As in the proof of Theorem 4, a variation-of-constants representation combined with the strong law for the associated Doléans-Dade exponential shows that
Step 3: Time-average persistence of and bounds on . By Lemma 3, the balance relation for the total population reads
where
almost surely as
. Using
almost surely (Theorem 1) and Step 1–2, we obtain, along any sequence
for which
converge,
and
In particular, any subsequential limit of
is bounded above by
, so that
is almost surely bounded.
To obtain a positive lower bound, we use a refined logarithmic inequality for
. The computation in the proof of Lemma 4 can be repeated with
as a lower bound for
instead of an upper bound. This yields, in addition to (
19), an estimate of the form
where the same coefficients
appear as in (
15) and
almost surely as
. (The structure is identical to (
19), but with
replaced by
in the leading term, which precisely produces
).
Let
be any subsequential limit of
, so that there exists
with
almost surely. Along this sequence, (
42) gives
On the other hand,
for all
, and Theorem 1 implies
so that
Combining these two bounds yields, almost surely,
hence
This proves the lower bound (
37) for every subsequential limit
of
, and in particular shows that
is persistent in mean.
Step 4: Existence of the limit and asymptotics of S. From (
41), any subsequential limit
of
must satisfy
with
and
. In particular, along any subsequence for which
converges to some limit
, we have
Standard tightness and subsequent arguments for Markov jump-diffusion processes (applied to the family of occupation measures on ) imply that all subsequential limits of coincide almost surely; hence the full limit exists almost surely. The corresponding limit for follows from the balance relation above. This completes the proof of case (i); case (ii) is obtained by exchanging the roles of 1 and 2 and using , . □
Remark 3. Because , we have and . Thus, the conditions or ensure that the persistent strain in Theorem 5 enjoys a favourable noise-corrected transmission balance in at least one regime. The stochastic corrections and the regime switching enter both through the effective growth parameters and through the coupling coefficients , so that the competitive exclusion picture is quantitatively, but not qualitatively, altered by random fluctuations and switching. In both exclusion regimes, the co-infected class is forced to extinction because its inflow vanishes when the losing primary strain dies out and the remaining persistent strain alone cannot sustain a co-infected population.
4.4. Coexistence in Mean of Both Primary Strains and the Co-Infected Class
Finally, we describe parameter regimes under which both primary strains persist in the mean, i.e., their time averages converge to strictly positive limits. In this regime, the co-infected class has a well-defined mean burden determined by the long-term interaction between and . As in deterministic two-strain models, coexistence requires a delicate balance between the effective growth rates of the two pathogens, here modified by switching and Lévy perturbations.
Throughout this subsection, we keep the structural assumptions on
already used in Theorems 4 and 5, namely nonnegativity, at most linear growth, and the fact that
vanishes when either primary strain is absent, cf. (
36).
Theorem 6 (Coexistence in mean)
. Assume that Assumptions 1–4 hold, and that and , with , and as defined in (14) and (15). Suppose, in addition, thatThen, there exist almost surely finite random variables such thatwith boundsandMoreover, the susceptible time average satisfiesand there exists an almost surely finite random variable such thatwithIn particular, in the bilinear case , with , any nondegenerate coexistence of and (i.e., ) implies and therefore persistence in mean of the co-infected class. Proof. We proceed in three steps.
for some (random) limits
. By the uniform moment bounds of Lemma 2 and the sublinear growth of
from Theorem 1, such subsequences always exist almost surely.
Recall the logarithmic inequalities from Lemma 4:
where
Since
and
almost surely, we have
because eventually
and therefore
.
Evaluating (
49)–(
52) at
, letting
and using
,
, we obtain the limiting inequalities
Rearranging, we get four linear constraints:
Thus any limit point
of the time averages lies in the intersection of the two closed cones determined by (
57) and (
58).
and denote
Since all
, the sign conditions (
43) imply
and ensure that the two
linear systems
admit unique strictly positive solutions. A direct computation by Cramer’s rule gives
By (
43), all four quantities are strictly positive.
Geometrically, the inequalities (
57) define a closed half-plane above the line
and to the right of the line
; similarly, (
58) defines a closed region bounded by the two lines
and
. The vectors
and
are precisely the intersection points of these bounding lines. A standard comparison argument for linear inequalities (see, e.g., the deterministic two-strain SIS case) shows that any solution
of (
57) and (
58) in the positive quadrant must satisfy
This yields precisely the bounds (
44) and (
45) for all limit points
.
In particular, every limit point lies in the compact rectangle
Step 3: Existence of limits and behaviour of S and . The uniform moment bounds from Lemma 2 and the pathwise sublinear growth from Theorem 1 imply tight control of the family of random variables
. By Step 2, every limit point of this family lies in the compact set
. A standard Cauchy-type argument (or, equivalently, a compactness argument for the sequence of empirical measures
) shows that all limit points coincide almost surely. Hence, the full limits
exist almost surely and satisfy the bounds (
44) and (
45). In particular,
, so both primary strains are persistent in mean.
For the susceptible class, Lemma 3 gives the balance relation
with
almost surely. Combining this with Theorem 1 (which implies
), the convergence of
and
, and boundedness of
, we see that any subsequential limit
of
must satisfy
Since
, this identity forces
. On the other hand,
and
admits a uniform moment bound, so
is tight and any two subsequential limits must coincide. Thus, the full limit
exists and equals (
46). This also shows that
admits at least one subsequential limit
.
Finally, the linear balance (
23) for
, together with the convergence of
and
, implies that all subsequential limits of
coincide. Hence,
almost surely and (
48) holds. In the bilinear case
,
, we obtain
so any nontrivial overlap of the two strains in time (
) enforces
. This completes the proof. □
Remark 4. Theorem 6 shows how regime switching and Lévy noise reshape the coexistence region of the four-compartment co-infection model. Increasing the diffusion intensities or the jump amplitudes increases the logarithmic corrections , thereby reducing . This enlarges the extinction region ( and/or ), shrinks the coexistence region described by (43), and may induce competitive exclusion of a strain that would otherwise be viable in the deterministic setting. In the coexistence regime, the mean co-infection load is slaved to the long-term interaction term , so that stronger co-infection kernels or more synchronised fluctuations of and translate directly into a heavier burden of co-infection. 5. Numerical Scheme and Simulations
In this section, we numerically illustrate the extinction and persistence-in-mean results of
Section 4 for the hybrid stochastic SIS co-infection model with two primary infectious strains,
and
, and a co-infected host class
. The transmission is governed by a Crowley–Martin incidence function with co-infection, modulated by a two-state Markovian switching process and perturbed by multiplicative Lévy noise. We first describe the time discretisation and simulation algorithm, then specify the parameter choices and the four regimes for the noise-corrected growth coefficients
. Finally, we report the numerical outcomes for the four representative scenarios: (i) double extinction, (ii) single-strain persistence of
, (iii) single-strain persistence of
, and (iv) coexistence in mean of both primary strains and the co-infected class.
5.1. Time Discretisation and Simulation Algorithm
We approximate the continuous-time dynamics by simulating a single long trajectory
on a uniform time grid
,
, with
. The regime process
is a continuous-time Markov chain on the finite state space
with generator
Q, simulated by combining exponential holding times with the embedded jump chain. Conditionally on a realisation of
, the state variables satisfy the Lévy-driven SDE system
where
are independent standard Brownian motions and
is a compensated Poisson process with intensity
and constant relative jump amplitudes
.
The nonlinear Crowley–Martin incidence functions with co-infection are given by
and co-infection is driven by the bilinear terms
On the discrete grid, we employ a standard Euler–Maruyama scheme with compensated jump corrections. Writing
and denoting the Brownian increments by
, independent for
and across
n, the one-step updates read
where the compensated jump increment is defined by
independent of the Brownian motions and of
. To enforce positivity of the state variables, after each step, we truncate componentwise:
The regime process
is advanced using the discrete-time transition matrix
Given
, we sample
from the categorical distribution with probabilities given by the
j-th row of
P, using inverse transform sampling. This yields a consistent first-order time discretisation of the underlying Markov-modulated environment.
Time averages entering the extinction and persistence criteria are approximated by Riemann sums along the simulated trajectory, e.g.,
For each parameter regime, we fix
T large and work with a single long realisation, which is sufficient to visualise a typical sample paths, running time averages, and the effect of regime switching on the asymptotic behaviour of the infectious compartments.
5.2. Parameter Choices and Regimes for
The demographic and removal parameters
, the co-infection intensities
, the Crowley–Martin saturation parameters
, the diffusion coefficients, and the Lévy jump data are kept fixed across all experiments and are chosen so that the structural assumptions of
Section 3 are satisfied. In the simulations, we prescribe
so that the total removal rates for the infectious classes are
Co-infection is taken symmetrically,
, and the Crowley–Martin saturation parameters are chosen as
so that both primary strains experience the same level of behavioural saturation and the co-infected class contribute equally to their effective infectious pressures. The multiplicative diffusion intensities are also taken identical,
, in order to isolate the effect of transmission heterogeneity and regime switching from that of the Brownian fluctuations.
Lévy perturbations are modelled by a common compensated compound Poisson process of intensity
with constant relative jump amplitudes
. For these values, the noise-induced logarithmic drift corrections
appearing in the dynamics of
, cf. (
10), coincide for the two primary strains and are given by
Thus the effective growth of
and
is modified by the same stochastic correction.
The regime process
is taken as a symmetric two-state continuous-time Markov chain with generator
so that the system switches between two transmission environments with equal average sojourn times. The Euler–Maruyama scheme described in
Section 5 is implemented on the time interval
with
These initial conditions place the system in a moderately endemic regime and allow the long-term behaviour dictated by the coefficients
to emerge clearly.
In each regime
, the transmission rates
and
are constrained to lie in prescribed intervals
and
. The associated noise-corrected growth coefficients
defined in (
12) and (
13),
summarise the balance between transmission and effective removal for each strain under the hybrid perturbations. In particular,
and
control upper exponential growth bounds along the switching trajectories, whereas
and
encode lower growth constraints and are instrumental in the extinction inequalities of
Section 4.
We consider four configurations of the transmission intervals, corresponding respectively to double extinction, single-strain persistence for each of the two primary strains, and coexistence in means of both strains and the co-infected class. For each configuration, we compute the associated
and approximate the empirical time averages
along a single long trajectory. The numerical values are collected in
Table 2 and
Table 3.
Table 2 shows that thesign patterns of
realise exactly the four regimes analysed in
Section 4. The second subtable reports the corresponding empirical time averages of the infectious compartments, and makes explicit the quantitative separation between extinction regimes (small averages) and persistence/coexistence regimes (averages uniformly bounded away from zero).
5.3. Numerical Scenarios and Qualitative Behaviour
In the first configuration, we take and , which yields and . By Theorem 4, this sign pattern implies almost sure extinction of both primary strains and, consequently, of the co-infected class.
Biological interpretation of Figure 1. The trajectories indicate a
failed invasion scenario. Transmission intensity is below the effective loss intensity generated by (i) natural removal
, (ii) recovery
, and (iii) disease-induced removal
, so each infectious class has a negative net growth when rare. Moreover, the Crowley–Martin denominators amplify this effect by capturing
behavioural/contact limitation: even when susceptibles are abundant, effective contacts saturate (via
), and any transient increase in infectious density further reduces marginal transmission (via
). Hence,
and
quickly drift towards near-zero levels. Because co-infection requires
simultaneous circulation of both strains, the bilinear terms
and
collapse even faster, driving
to extinction as well. The susceptible compartment relaxes towards the demographic balance
, meaning that
host turnover dominates and the population remains essentially susceptible in the long run.
Table 2 and
Table 3 therefore reflect very small time averages, consistent with an elimination regime.
In the second configuration, we increase the transmission rate of strain 1 to while keeping . This choice leads to , so Theorem 5 predicts persistence in mean of and extinction in mean of , with the co-infected class remaining small.
Biological interpretation of Figure 2. This is a
competitive exclusion regime driven by a clear fitness advantage of strain 1. After accounting for recovery and removals
and the saturation effects, strain 1 still achieves a positive long-run growth tendency (captured by the sign condition), so it establishes an endemic level and fluctuates around it under switching/noise. In contrast, strain 2 remains below its invasion threshold: its effective transmission cannot compensate for
and saturation, so
is repeatedly suppressed and spends long epochs near zero. The behaviour of
has a direct epidemiological meaning: co-infection is
incidence-limited because its inflow is proportional to
. Even though
persists, the scarcity of
makes co-infection events rare, so
shows only small bursts caused by occasional transient excursions of
. Accordingly,
Table 2 and
Table 3 exhibits a substantial
with much smaller averages for
and
, supporting exclusion in favour of strain 1.
In the third scenario, we take and , which yields . The theoretical results predict persistence in mean of and extinction of and .
Biological interpretation of Figure 3. Case C is the mirror image of Case B: strain 2 is now the dominant competitor. Its higher baseline transmissibility
allows it to overcome losses
despite the same behavioural and infectious-side saturation. Strain 1 cannot invade and is pushed towards elimination, resulting in long intervals where
. The co-infected class remains
secondary and transient for the same structural reason as in Case B: its creation requires encounters between two actively circulating strains. Thus
appears as intermittent, low-amplitude episodes when stochastic fluctuations temporarily lift
away from zero, but these episodes do not persist on long horizons. The averages in
Table 2 and
Table 3 therefore reflect an endemic burden dominated by
, with negligible contribution from
and a small but non-zero contribution from
capturing transient co-infection events.
Finally, we select moderately high infection rates and , and increase the co-infection intensities to . In this configuration, we obtain for , and the coexistence conditions of Theorem 6 are satisfied.
Biological interpretation of Figure 4. This regime represents
long-term co-circulation of both strains together with a persistent co-infected class. Both strains have sufficiently strong effective transmission to compensate for their respective loss rates
, even under contact saturation and environmental perturbations. In addition, the larger co-infection coefficients
make the conversion
and
epidemiologically relevant whenever both strains are present. Consequently,
is not merely a transient by-product but a sustained burden maintained by continual secondary acquisition events. Crowley–Martin saturation plays a stabilising role here: it limits explosive growth during high-transmission phases by reducing marginal incidence at large
S and large infectious densities, which supports bounded endemic fluctuations rather than runaway outbreaks. Therefore, the three infectious trajectories in
Figure 4 fluctuate around strictly positive levels, and the empirical averages
,
, and
in
Table 2 and
Table 3 remain clearly bounded away from zero. Epidemiologically, this corresponds to a setting where two variants persist in the same host community, and co-infection contributes a non-negligible fraction of disease burden (e.g., via increased severity or onward transmission).
Generally, the four numerical regimes provide a coherent biological validation of the extinction, single-strain persistence, and coexistence scenarios predicted by the logarithmic Lyapunov analysis. They distinguish (i) failed invasion (Case A), (ii) competitive exclusion (Cases B–C), and (iii) stable co-circulation with sustained co-infection (Case D) under behavioural saturation and hybrid environmental perturbations.
6. Conclusions
In this work, we developed and analysed a hybrid stochastic SIS co-infection model with two primary strains and a co-infected class, driven by Crowley–Martin incidence, Markovian regime switching and multiplicative Lévy perturbations. The model incorporated three distinct sources of complexity that are rarely combined in a single framework: (i) nonlinear behavioural saturation in the transmission mechanism, (ii) explicit co-infection terms coupling the two strains via a shared infected compartment, and (iii) hybrid stochastic forcing through both regime switching and compensated Poisson jumps acting multiplicatively on all epidemiological variables. This setting extended classical deterministic and diffusion-based SIS formulations to a more realistic, yet analytically tractable, description of multi-strain circulation in a fluctuating environment.
At the pathwise level, we first established global existence, uniqueness and positivity of the solution under mild structural assumptions on the parameters and jump amplitudes. By exploiting the specific form of the drift and noise coefficients, we derived a family of logarithmic stochastic differential inequalities for the primary strains and identified noise-corrected growth coefficients that incorporated both diffusion and Lévy effects. A key novelty of the analysis lay in the combination of these logarithmic estimates with regime-switching bounds and co-infection structure, which allowed us to control the long-term behaviour of the two primary strains and to show that the co-infected class inherits extinction or persistence properties from the interaction of the primaries.
On this basis, we obtained sharp extinction and persistence-in-mean criteria for the hybrid co-infection system. In particular, we proved that negative upper growth coefficients guaranteed almost sure extinction of both primary strains (and hence of the co-infected class), while mixed-sign patterns such as or led to single-strain persistence in mean, with the losing strain and the co-infected class becoming negligible over long time intervals. In the fully supercritical regime , , we showed that suitable sign conditions on two auxiliary matrices A and B implied coexistence in mean of both primary strains, and that the co-infected class retained a strictly positive time-averaged burden. To our knowledge, these extinctions, single-strain persistence and coexistence results are the first to be derived for a multi-strain SIS co-infection model with Crowley–Martin incidence under the joint action of regime switching and Lévy jumps.
The theoretical thresholds were supported by a detailed numerical study based on an Euler–Maruyama scheme with jump corrections and a discrete approximation of the Markovian switching process. We implemented four representative parameter regimes corresponding to: (i) double extinction, (ii) persistence of strain 1 and extinction of strain 2, (iii) persistence of strain 2 and extinction of strain 1, and (iv) coexistence in mean of all infectious classes. In each case, the simulated trajectories and empirical time averages of the infectious compartments agreed closely with the sign structure of the noise-corrected growth coefficients and the coexistence conditions, thereby providing a coherent numerical validation of the logarithmic Lyapunov analysis. From a biological viewpoint, the four scenarios illustrated the transition from non-invasion to competitive exclusion and long-term co-circulation of two strains in a noisy, regime-switching environment, with the co-infected class behaving as a sensitive marker of mutual interaction between variants.
The methodology developed here can be extended in several directions. On the modelling side, it would be natural to incorporate vaccination, waning immunity or additional epidemiological stages, or to replace the scalar jump process by regime-dependent or state-dependent Lévy measures. On the analytical side, one could investigate finer distributional properties (e.g., ergodicity and invariant measures in the coexistence regime) or derive large-deviation estimates for rare extinction events in the supercritical case. These perspectives underline that the hybrid stochastic co-infection framework introduced in this paper provides a flexible platform for studying multi-strain dynamics under realistic environmental and behavioural variability, and offers a tractable set of threshold quantities that remain robust in the presence of both regime switching and jump noise.