Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework
Abstract
:1. Introduction
2. The Metaproteomics Gateway
2.1. Description of the Accessible Resources
2.2. The Playground: The Galaxy-P Platform
2.3. The First Step: Protein Sequence Database Generation Using a Galaxy-Based Tool
2.4. The Next Steps: Using a Galaxy Workflow
2.5. The Second Step: Spectral Matching
2.6. The Third Step: Taxonomic Classification
2.7. The Fourth Step: Functional Analysis
2.8. Links to Accessible Resources for Training
Supplementary Materials
Acknowledgments
Author Contributions
Conflicts of Interest
References
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Metaproteomics Gateway | z.umn.edu/metaproteomicsgateway |
Galaxy Training Network | http://galaxyproject.github.io/training-material/topics/proteomics/tutorials/metaproteomics/tutorial.html |
Documentation | Supplement S1 |
Introductory video | z.umn.edu/mpvideo2018 |
Galaxy toolshed | https://toolshed.g2.bx.psu.edu/ |
GitHub | https://github.com/galaxyproteomics |
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Blank, C.; Easterly, C.; Gruening, B.; Johnson, J.; Kolmeder, C.A.; Kumar, P.; May, D.; Mehta, S.; Mesuere, B.; Brown, Z.; et al. Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework. Proteomes 2018, 6, 7. https://doi.org/10.3390/proteomes6010007
Blank C, Easterly C, Gruening B, Johnson J, Kolmeder CA, Kumar P, May D, Mehta S, Mesuere B, Brown Z, et al. Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework. Proteomes. 2018; 6(1):7. https://doi.org/10.3390/proteomes6010007
Chicago/Turabian StyleBlank, Clemens, Caleb Easterly, Bjoern Gruening, James Johnson, Carolin A. Kolmeder, Praveen Kumar, Damon May, Subina Mehta, Bart Mesuere, Zachary Brown, and et al. 2018. "Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework" Proteomes 6, no. 1: 7. https://doi.org/10.3390/proteomes6010007