An End-to-End Lightweight Multi-Scale CNN for the Classification of Lung and Colon Cancer with XAI Integration
Abstract
:1. Introduction
- ▪
- Most of these techniques have substantial computing costs and require a lot of labeled training data.
- ▪
- Overfitting can happen when the model works well with training data but poorly with new, untested data.
- ▪
- Risk of poor performance brought on by inaccurate or biased training data.
- ▪
- DL models’ decision-making process is not explainable.
- A novel lightweight multi-scale (LW-MS) end-to-end CNN model for the identification of LCC is introduced. The proposed model has 1.1 million trainable parameters and is superior to other models in this field, which need deeper layers to achieve acceptable detection accuracy. This reduces processing time and model complexity, making the system suitable for real-time applications.
- To increase the accuracy and efficiency of multi-class predictions, predictions from multiple layers are concatenated to produce a range of feature maps that function at different resolutions.
- XAI techniques have been integrated into the proposed LW-MS CNN model with its performance metrics analysis. This aspect has frequently been neglected in prior studies.
- A web application system has been developed with the purpose of aiding pathologists and doctors in the diagnosis of histological pictures and offering substantiation for their scientific findings.
2. Related Works
3. Proposed Method
3.1. Dataset Description
3.2. Data Pre-Processing
3.3. Lightweight Multi-Scale Convolution Cancer Network
3.4. XAI
3.4.1. Grad-CAM
3.4.2. SHAP Visualization
4. Result Analysis
4.1. Experimental Setup
4.2. Performance Metrics of the Proposed Framework
4.3. Performance Evaluations
Performance Evaluation of Lung and Colon Cancer
4.4. XAI Visualization
4.5. Web Application
- (a)
- For colon adenocarcinomas, the proposed model correctly identifies and predicts this category.
- (b)
- In the case of benign colon tissue, the proposed model accurately classifies the input images as such.
- (c)
- Similarly, for benign lung tissue, the proposed model correctly predicts and categorizes the images.
- (d)
- When it comes to lung adenocarcinomas, the proposed model reliably classifies the input images with precision.
- (e)
- Finally, for lung squamous cell carcinoma, the proposed model consistently provides accurate real-time predictions.
5. Discussion
References | Cancer Type | Methods | XAI | Accuracy | Precision | Recall | F1-Score |
---|---|---|---|---|---|---|---|
[34] | Lung and colon | Feature extraction | Yes | 95.60% | 95.8% | 96.00% | 95.90% |
[21] | Lung and colon | CNN | No | 96.33% | 96.39% | 96.37% | 96.38% |
[22] | Lung | CNN | No | 97.20% | 97.33% | 97.33% | 97.33% |
[19] | Lung | CNN | No | 97.89% | - | - | - |
[19] | Colon | CNN | No | 96.61% | - | - | - |
[52] | Colon | CNN | No | 99.50% | 99.00% | 100% | 99.49% |
[38] | Lung and colon | CNN | No | 99.00% | - | - | - |
[53] | Colon | CNN | No | 99.21% | 99.18% | 98.23% | 98.70% |
[53] | Lung | CNN | No | 98.30% | 97.84% | 98.16% | 97.99% |
Proposed | Lung and colon | LW-MS-CCN | Yes | 99.20% | 99.16% | 99.36% | 99.16% |
- The proposed model achieved an accuracy of 99.20% for the overall LCC class classification (five classes), indicating that it can detect LCC with greater accuracy than similar DL models.
- The suggested model is more appropriate for real-time applications, such as mobile or Internet of Medical Things (IoMT) devices, because it has fewer computationally expensive parameters (1.1 million) compared to existing DL models.
- The multi-scale aspect of the proposed model plays a pivotal role in extracting features at different hierarchical levels, thereby enriching its ability to discern intricate patterns inherent in LCC images.
- When compared to existing DL models, the suggested model is an end-to-end model since it can complete feature extraction and classification in a single pipeline. This reduces the system’s complexity.
- The CV technique was employed to train and evaluate the suggested model, with the aim of reducing overfitting and enhancing the model’s generalizability by applying it to three combinations of the LC25000 dataset.
- The integration of XAI algorithms, such as Grad-CAM and SHAP, enhances the model’s interpretability by providing diverse and complementary insights into feature importance, enabling a more comprehensive understanding of the model’s decision-making process.
- ▪
- The proposed model has undergone testing on an LCC dataset using cross-validation methods. However, it has not yet undergone complete validation for application in real clinical scenarios. Additional clinical trials are necessary to validate the reliability and precision of the model in real-life scenarios.
- ▪
- Despite the advancements in DL, the diagnosis of LCC still poses a difficult problem that requires a careful assessment of several parameters, such as the disease’s location, shape, size, and the improvements observed following contrast enhancement. The suggested model may not comprehensively consider all of these parameters, suggesting a requirement for more enhancements to improve its accuracy in identifying LCC.
- ▪
- Future work will focus on enhancing the model to minimize the margin of error in XAI.
6. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Classes | No. of Images |
---|---|
Benign lung tissue | 5000 |
Lung adenocarcinomas | 5000 |
Lung squamous cell carcinoma | 5000 |
Benign colon tissue | 5000 |
Colon adenocarcinomas | 5000 |
Layer (Type) | Output Shape | Params | Connected to |
---|---|---|---|
Input 1 | (None, 180, 180, 3) | 0 | |
conv2d | (None, 180, 180, 7) | 196 | Input 1 |
conv2d_1 | (None, 180, 180, 9) | 576 | conv2d |
max_pooling2d | (None, 90, 90, 9) | 0 | conv2d_1 |
conv2d_2 | (None, 90, 90, 16) | 1312 | max_pooling2d |
conv2d_3 | (None, 90, 90, 32) | 4640 | conv2d_2 |
max_pooling2d_1 | (None, 45, 45, 32) | 0 | conv2d_3 |
conv2d_4 | (None, 45, 45, 32) | 9248 | max_pooling2d_1 |
conv2d_5 | (None, 45, 45, 64) | 18,496 | conv2d_4 |
max_pooling2d_2 | (None, 22, 22, 64) | 0 | conv2d_5 |
conv2d_6 | (None, 22, 22, 64) | 36,928 | max_pooling2d_2 |
conv2d_7 | (None, 22, 22, 64) | 36,928 | conv2d_6 |
max_pooling2d_3 | (None, 11, 11, 64) | 0 | conv2d_7 |
conv2d_8 | (None, 11, 11, 64) | 36,928 | max_pooling2d_3 |
conv2d_9 | (None, 11, 11, 128) | 73,856 | conv2d_8 |
max_pooling2d_4 | (None, 5, 5, 128) | 0 | conv2d_9 |
conv2d_10 | (None, 5, 5, 128) | 147,584 | max_pooling2d_4 |
conv2d_11 | (None, 5, 5, 128) | 147,584 | conv2d_10 |
max_pooling2d_5 | (None, 2, 2, 128) | 0 | conv2d_11 |
conv2d_11 | (None, 2, 2, 32) | 32,896 | max_pooling2d_5 |
conv2d_12 | (None, 2, 2, 64) | 18,496 | conv2d_11 |
conv2d_13 | (None, 2, 2, 128) | 73,856 | conv2d_12 |
concatenate | (None, 2, 2, 224) | 0 | conv2d_13, conv2d_12, conv2d_11 |
flatten | (None, 896) | 0 | concatenate |
dense | (None, 512) | 459,264 | flatten |
dropout | (None, 512) | 0 | dense |
dense_1 | (None, 5) | 2565 | dropout |
Total params | 11,05,353 | ||
Trainable params | 11,05,353 | ||
Non-trainable params | 0 |
Parameters | Value |
---|---|
Loss function | Sparse-categorical-cross-entropy |
Initial learning rate | 0.0001 |
No. of epochs | 100 |
Batch size | 16 |
Shuffle | Every epoch |
Features | Specifications |
---|---|
Programming Language | Python (version-3.10.12) |
Environment | Google Colab |
Backend | Keras with TensorFlow |
Disk Space | 78.2 GB |
GPU RAM | 15 GB |
GPU | Nvidia Tesla T4 |
System RAM | 12.72 GB |
Operating System | windows 11 |
Input | LCC Images |
Input Size | 180 × 180 |
Web Development Tool | Gradio Library |
Fold Number | Class | Accuracy (%) | Precision (%) | Recall (%) | F1-Score (%) | Specificity (%) | AUC |
---|---|---|---|---|---|---|---|
Fold = 1 | Col_Ade | 99.92 | 99.71 | 99.90 | 99.80 | 99.37 | 100 |
Col_Ben | 99.92 | 99.90 | 99.70 | 99.80 | 99.68 | 100 | |
Lun_Ben | 99.98 | 100 | 99.90 | 99.95 | 99.57 | 100 | |
Lun_Ade | 99.24 | 97.69 | 98.48 | 98.09 | 100 | 100 | |
Lun_Squ | 99.26 | 98.50 | 97.81 | 98.15 | 100 | 100 | |
Average | 99.66 | 99.16 | 99.16 | 98.16 | 99.72 | 100 | |
Fold = 2 | Col_Ade | 99.80 | 99.42 | 99.61 | 99.51 | 99.40 | 100 |
Col_Ben | 99.86 | 99.80 | 99.50 | 99.65 | 99.81 | 100 | |
Lun_Ben | 99.94 | 99.80 | 99.90 | 99.85 | 99.71 | 100 | |
Lun_Ade | 99.08 | 97.52 | 97.72 | 97.62 | 97.89 | 100 | |
Lun_Squ | 99.16 | 98.01 | 97.82 | 97.91 | 99.61 | 100 | |
Average | 99.57 | 98.91 | 98.91 | 98.91 | 99.68 | 100 | |
Fold = 3 | Col_Ade | 99.84 | 99.58 | 99.58 | 99.58 | 99.68 | 100 |
Col_Ben | 99.90 | 99.80 | 99.71 | 99.75 | 99.57 | 100 | |
Lun_Ben | 99.94 | 99.80 | 99.90 | 99.85 | 99.79 | 100 | |
Lun_Ade | 99.10 | 97.89 | 97.59 | 97.74 | 100 | 100 | |
Lun_Squ | 99.14 | 97.78 | 98.06 | 97.92 | 100 | 100 | |
Average | 99.58 | 98.97 | 98.97 | 98.97 | 99.81 | 100 | |
Fold = 4 | Col_Ade | 99.82 | 100 | 99.80 | 99.80 | 100 | 100 |
Col_Ben | 99.94 | 99.70 | 99.60 | 99.80 | 100 | 100 | |
Lun_Ben | 99.98 | 99.90 | 99.90 | 99.95 | 100 | 100 | |
Lun_Ade | 99.37 | 98.69 | 99.50 | 98.09 | 99.60 | 100 | |
Lun_Squ | 99.45 | 98.89 | 98.89 | 98.15 | 100 | 100 | |
Average | 99.71 | 99.39 | 99.54 | 99.16 | 99.92 | 100 | |
Fold = 5 | Col_Ade | 99.75 | 99.42 | 99.58 | 99.40 | 99.80 | 100 |
Col_Ben | 99.80 | 99.75 | 99.71 | 99.30 | 100 | 100 | |
Lun_Ben | 99.90 | 99.66 | 99.90 | 99.40 | 100 | 100 | |
Lun_Ade | 99.50 | 97.77 | 97.59 | 98.55 | 98.98 | 100 | |
Lun_Squ | 99.30 | 97.90 | 98.06 | 98.92 | 98.67 | 100 | |
Average | 99.65 | 98.90 | 97.77 | 99.11 | 99.49 | 100 |
Metric | Ref. Value | Grad-CAM | SHAP |
---|---|---|---|
nRMSE | 0.0 | 0.0789 ± 0.0156 | 0.0678 ± 0.0245 |
SSIM | 1.0 | 0.6198 ± 0.0259 | 0.7541 ± 0.0455 |
MS-SSIM | 1.0 | 0.8934 ± 0.0754 | 0.8874 ± 0.0921 |
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Share and Cite
Hasan, M.A.; Haque, F.; Sabuj, S.R.; Sarker, H.; Goni, M.O.F.; Rahman, F.; Rashid, M.M. An End-to-End Lightweight Multi-Scale CNN for the Classification of Lung and Colon Cancer with XAI Integration. Technologies 2024, 12, 56. https://doi.org/10.3390/technologies12040056
Hasan MA, Haque F, Sabuj SR, Sarker H, Goni MOF, Rahman F, Rashid MM. An End-to-End Lightweight Multi-Scale CNN for the Classification of Lung and Colon Cancer with XAI Integration. Technologies. 2024; 12(4):56. https://doi.org/10.3390/technologies12040056
Chicago/Turabian StyleHasan, Mohammad Asif, Fariha Haque, Saifur Rahman Sabuj, Hasan Sarker, Md. Omaer Faruq Goni, Fahmida Rahman, and Md Mamunur Rashid. 2024. "An End-to-End Lightweight Multi-Scale CNN for the Classification of Lung and Colon Cancer with XAI Integration" Technologies 12, no. 4: 56. https://doi.org/10.3390/technologies12040056
APA StyleHasan, M. A., Haque, F., Sabuj, S. R., Sarker, H., Goni, M. O. F., Rahman, F., & Rashid, M. M. (2024). An End-to-End Lightweight Multi-Scale CNN for the Classification of Lung and Colon Cancer with XAI Integration. Technologies, 12(4), 56. https://doi.org/10.3390/technologies12040056