Identification of Quantitative Trait Loci Associated with Powdery Mildew Resistance in Spring Barley under Conditions of Southeastern Kazakhstan
Abstract
:1. Introduction
2. Results
2.1. PM Resistance and Its Correlation with Agronomic Traits in the Studied Barley Collection
2.2. Populaton Structure, QTLs for Powdery Mildew PM Resistance, and Linkage Disequilibrium (LD) among Them
2.3. Effect of Haplotypes
3. Discussion
3.1. PM Resistance in the Field and Its Relations with Yield Components
3.2. QTLs for PM Resistance
3.3. Promising Haplotypes for PM Resistance
4. Materials and Methods
4.1. Barley Germplasm Panel and SNP Genotyping
4.2. Field Trials and PM Resistance Evaluation
4.3. Genome-Wide Association Study (GWAS), Linkage Disequilibrium (LD), Population Structure, and Haplotype Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
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QTL | Marker | Chr. | Position (bp) | MAF | 2020 | 2022 | Candidate Loci | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p-Value | FDR p-Value | PVE (%) | Alleles | Effect | p-Value | FDR p-Value | PVE (%) | Alleles | Effect | ||||||
Qhv_PM-4H.1 | 12_20274 | 4H | 3,623,098 | 0.139 | 1.2 × 10−8 | 0.000010 | 85.3 | G/C | −6.3 | Bgh-qtl-4H-11_10319 [56] | |||||
Qhv_PM-4H.2 | 11_10509 | 4H | 496,024,940 | 0.066 | 7.5 × 10−6 | 0.003696 | 0.0 | C/A | −4.4 | ||||||
Qhv_PM-4H.3 | 11_10914 | 4H | 511,791,369 | 0.178 | 8.9 × 10−6 | 0.003696 | 0.0 | C/G | −4.1 | ||||||
Qhv_PM-5H.1 | 12_30980 | 5H | 2,540,132 | 0.071 | 2.4 × 10−8 | 0.00004 | 20.6 | C/A | 5.4 | Qrbg_5H_1 [53] | |||||
Qhv_PM-5H.2 | 11_11240 | 5H | 354,892,901 | 0.101 | 6.2 × 10−10 | 0.000001 | 0.0 | A/T | 5.0 | ||||||
Qhv_PM-5H.3 | 12_10769 | 5H | 646,543,760 | 0.051 | 2.6 × 10−5 | 0.02137 | 12.8 | A/G | 4.2 | ||||||
Qhv_PM-7H.1 | 12_31513 | 7H | 475,182,581 | 0.112 | 2.2 × 10−5 | 0.007203 | 0.4 | A/G | −4.9 |
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Genievskaya, Y.; Zatybekov, A.; Abugalieva, S.; Turuspekov, Y. Identification of Quantitative Trait Loci Associated with Powdery Mildew Resistance in Spring Barley under Conditions of Southeastern Kazakhstan. Plants 2023, 12, 2375. https://doi.org/10.3390/plants12122375
Genievskaya Y, Zatybekov A, Abugalieva S, Turuspekov Y. Identification of Quantitative Trait Loci Associated with Powdery Mildew Resistance in Spring Barley under Conditions of Southeastern Kazakhstan. Plants. 2023; 12(12):2375. https://doi.org/10.3390/plants12122375
Chicago/Turabian StyleGenievskaya, Yuliya, Alibek Zatybekov, Saule Abugalieva, and Yerlan Turuspekov. 2023. "Identification of Quantitative Trait Loci Associated with Powdery Mildew Resistance in Spring Barley under Conditions of Southeastern Kazakhstan" Plants 12, no. 12: 2375. https://doi.org/10.3390/plants12122375