Efficacy of Urine Dipstick Test in Diagnosing Urinary Tract Infection and Detection of the blaCTX-M Gene among ESBL-Producing Escherichia coli
Abstract
:1. Introduction
2. Materials and Methods
2.1. Study Design and Setting
2.2. Sample Collection, Processing and Identification
2.3. Antimicrobial Susceptibility Testing
2.4. Phenotypic Confirmation of ESBL Producers
2.5. DNA Extraction and Amplification of blaCTX-M Gene by PCR
2.6. Quality Control
2.7. Data Analysis
3. Results
3.1. Distribution of Isolates
3.2. Sensitivity, Specificity, Positive Predictive Value and Negative Predictive Value for Urinary Dipstick Test
3.3. Association of UTI with Various Attributes
3.4. Antibiotic Susceptibility Pattern of Escherichia coli
3.5. Prevalence of ESBL Positive E. coli and blaCTX-M Gene
4. Discussion
5. Strengths and Limitations
6. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Gene | Primer (5′-3′) | Amplicon Size (bp) | Reference |
---|---|---|---|
CTX-M | F: 5′-TTTGCGATGTGCAGTACCAGTAA-3′ | 544 | [26] |
R: 5′-CGATATCGTTGGTGGTGCCATA-3′ |
Culture | ||||
---|---|---|---|---|
Positive | Negative | Total | ||
Dipstick test | Positive | 21 | 38 | 59 |
Negative | 27 | 131 | 158 | |
Total | 48 | 169 | 217 |
Attributes | Sample Size | UTI Infection n (%) | p-Value | |
---|---|---|---|---|
Gender | Male | 61 | 9 (14.75) | 0.103 |
Female | 156 | 39 (25.00) | ||
Age-group | 1–19 | 37 | 9 (24.32) | 0.019 * |
20–39 | 103 | 24 (23.30) | ||
40–59 | 50 | 8 (16.00) | ||
60–79 | 24 | 7 (29.17) | ||
>80 | 3 | 0 | ||
Department | In-patients | 79 | 11 (13.92) | 0.028 * |
Out-patients | 138 | 37 (26.81) |
Antibiotics Used | Susceptibility Pattern | ||
---|---|---|---|
Sensitive n (%) | Intermediate n (%) | Resistant n (%) | |
Amikacin | 30 (81.08) | 0 | 7 (18.92) |
Amoxyclav | 17 (45.95) | 1 (2.70) | 19 (51.35) |
Ciprofloxacin | 16 (43.24) | 1 (2.70) | 20 (54.05) |
Cotrimoxazole | 17 (45.95) | 0 | 20 (54.05) |
Gentamicin | 23 (62.16) | 2 (5.40) | 12 (32.43) |
Cefixime | 15 (40.54) | 0 | 22 (59.46) |
Nitrofurantoin | 26 (70.27) | 1 (2.70) | 10 (27.03) |
Cefazolin | 13 (35.14) | 1 (2.70) | 23 (62.16) |
Ceftriaxone | 20 (54.05) | 0 | 17 (45.95) |
Cefotaxime | 20 (54.05) | 0 | 17 (45.95) |
Ceftazidime | 18 (48.65) | 0 | 19 (51.35) |
Nalidixic acid | 13 (35.14) | 2 (5.40) | 22 (59.46) |
Piperacillin/Tazobactam | 23 (62.16) | 0 | 14 (37.84) |
Organism | Total Isolates | ESBL Producers | ||
---|---|---|---|---|
Presumptive n (%) | Confirmatory n (%) | blaCTX-M Gene n (%) | ||
E. coli | 37 | 19 (51.35) | 14 (37.84) | 8 (21.62) |
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Gurung, R.; Adhikari, S.; Adhikari, N.; Sapkota, S.; Rana, J.C.; Dhungel, B.; Thapa Shrestha, U.; Banjara, M.R.; Ghimire, P.; Rijal, K.R. Efficacy of Urine Dipstick Test in Diagnosing Urinary Tract Infection and Detection of the blaCTX-M Gene among ESBL-Producing Escherichia coli. Diseases 2021, 9, 59. https://doi.org/10.3390/diseases9030059
Gurung R, Adhikari S, Adhikari N, Sapkota S, Rana JC, Dhungel B, Thapa Shrestha U, Banjara MR, Ghimire P, Rijal KR. Efficacy of Urine Dipstick Test in Diagnosing Urinary Tract Infection and Detection of the blaCTX-M Gene among ESBL-Producing Escherichia coli. Diseases. 2021; 9(3):59. https://doi.org/10.3390/diseases9030059
Chicago/Turabian StyleGurung, Rubina, Sanjib Adhikari, Nabaraj Adhikari, Sanjeep Sapkota, Jid Chani Rana, Binod Dhungel, Upendra Thapa Shrestha, Megha Raj Banjara, Prakash Ghimire, and Komal Raj Rijal. 2021. "Efficacy of Urine Dipstick Test in Diagnosing Urinary Tract Infection and Detection of the blaCTX-M Gene among ESBL-Producing Escherichia coli" Diseases 9, no. 3: 59. https://doi.org/10.3390/diseases9030059
APA StyleGurung, R., Adhikari, S., Adhikari, N., Sapkota, S., Rana, J. C., Dhungel, B., Thapa Shrestha, U., Banjara, M. R., Ghimire, P., & Rijal, K. R. (2021). Efficacy of Urine Dipstick Test in Diagnosing Urinary Tract Infection and Detection of the blaCTX-M Gene among ESBL-Producing Escherichia coli. Diseases, 9(3), 59. https://doi.org/10.3390/diseases9030059