Image Formation Algorithms for Low-Cost Freehand Ultrasound Scanner Based on Ego-Motion Estimation and Unsupervised Clustering
Abstract
:1. Introduction
- Philips Lumify—200 USD/month per probe + 75 USD/month warranty.
- Sonosite IVIZ—USD 10,000.
- GE VSAN Extend—starts at USD 2995.
- Clarius—starts at USD 6900.
- Butterfly IQ—USD 1999 + 420 USD/year for cloud user license.
- Optimisation of the decorrelation-based velocity estimation technique for linear scans and application of the unscented Kalman filter (UKF) to filter out the effects of noisy velocity estimates to improve trajectory estimates.
- First-time exploitation of unsupervised clustering (K-means, SFCM and GMM) on the 1D raw ultrasound imaging data.
- Reconstruction of geometrically correct 2D ultrasound images of phantom and in vivo data from the single-element transducer.
2. Related Research
3. Material and Methods
3.1. Proposed Ultrasound Scanner Design
3.2. Pre-Processing the Echo Data
3.3. Ultrasound Decorrelation Measurements
- (1)
- The absolute differences between the echo signal intensities of each consecutive scan line were calculated.
- (2)
- The mean of the absolute differences was calculated.
- (3)
- Steps 1 and 2 were repeated for all the other scan lines by moving successively through all the data.
3.3.1. Velocity Calculation for the Ultrasound Probe
3.3.2. Unscented Kalman Filter
3.4. K-Means Clustering
- The number of clusters, K, is given as a priori and it has been chosen to be equal to 3 in this project. This is because echo data needs to be clustered in three clusters, i.e., hyperechoic, anechoic and hypoechoic.
- Cluster centres are chosen randomly by the algorithm.
- The distance d between echo data, , and the cluster centre, , is calculated using the Euclidean distance formula as follows:
- The membership function, , is computed in which denote the membership degree of the th data point to the th cluster, ∈ [0,1].
Algorithm 1: Kmeans clustering pseudocode. |
- 5.
- Then, the k-means objective function is calculated as follows:is minimized by iterating the k-means algorithm.
- 6.
- The cluster centres, , and membership function, , are updated using the equations shown below:
3.5. SFCM Clustering
- Set values for K, l and . Where,K = number of clusters = 3.l = is the weighting exponent (>1) on each fuzzy membership that controls the fuzziness of resultant segmentation.= termination criterion between [0,1].
- Initialise the fuzzy membership function matrix whereas, the membership functions are subject to the following constraints:
- Calculate the cluster centres as follows:
Algorithm 2: SFCM clustering pseudocode. |
- 4.
- Compute the membership function . For (), calculate the following:
- if = ø then
- Otherwise, = 0 for all I and ;
- 5.
- If , stop; otherwise, keep incrementing the loop and repeat step 3, 4 and 5. Where ( number of iterations = 100).
3.6. GMM Clustering
- K-means clustering for a reduced number of iterations using a random parameter initialization.
- GMM-EM clustering using the parameter initialization is given by the results of the previous K-means clustering phase. Assuming expectation maximization for a Gaussian mixture model (GMM-EM), the goal is to maximize the likelihood function with respect to the parameters (comprising the means and covariances of the components and the mixing coefficients). The steps of the EM clustering are further presented:
- (a)
- Compute the means , covariance matrices and mixing coefficients (where ) as a result of the previous phase of K-means clustering, by considering them as initialization parameters for the present GMM-EM phase and evaluate the initial value of the log-likelihood.
- (b)
- E step. Evaluate the responsibilities using the current parameter values.
- (c)
- M step. Re-estimate the parameters using the current responsibilities.
- (d)
- Evaluate the log-likelihood.
- (e)
- Check for convergence of either the parameters or the log-likelihood. If the convergence criterion is not satisfied, return to Step B.
Algorithm 3: GMM clustering pseudocode. |
4. Experimental Evaluations
4.1. Set-Up for Scanning
4.2. Phantom Experiments
4.3. In Vivo Experiments
5. Conclusions and Future Work
Future Work
- Physical beam shape—in a fixed focus ultrasonic design, it is clear that the beam width and depth of focus have a strong influence on the backscattered signals and hence both the image resolution and the performance of correlation-based ego-motion estimation. More investigation is required to understand this relationship and to determine the optimum parameters for different applications.
- Synthetic focusing—a fixed focus design places constraints on lateral resolution vs. depth. It is interesting to consider whether monostatic synthetic aperture concepts as in [9] could be applied to the freehand scanner. This is very challenging, however, due to the requirement for precise tracking/control of the transducer trajectory and orientation.
- Frequency band—the frequency band considered in this paper (fc = 4.2 MHz, B = 2 MHz) was chosen for abdominal imaging with penetration up to 15 cm. Other possible applications aimed at imaging more superficial structures (e.g., muscles, vascular, breast) would favour a higher frequency design and the scalability of the proposed scanner design and the algorithms needs to be investigated.
- Front end—the ultrasound front end design in these experiments is sub-optimal in terms of noise performance and this limits both the image SNR and the depth range, which can be effectively utilised for correlation. A review of the front-end amplifier and impedance matching arrangements has significant potential to improve on this.
Author Contributions
Funding
Conflicts of Interest
References
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Parameter | Symbol | Value |
---|---|---|
Centre Frequency | 4.2 MHz | |
Bandwidth | 2 MHz | |
Range | R | 0.15 m |
Sampling Frequency | 25 MHz | |
Speed of Sound in tissues | c | 1540 ms−1 |
Element Width | 2 mm | |
Element Length | 7 mm | |
Element Thickness | 0.5 mm | |
Frame/s | 400 |
Parameter | Value |
---|---|
Elevation Focus (mm) | 50.5 |
Slice thickness at elevation focus | 1.2 |
Axial Resolution in focus (mm) | 0.37 ± 0.05 |
Axial Resolution averaged over depth (mm) | 0.55 ± 0.13 |
Lateral Resolution in focus (mm) | 1.25 ± 0.06 |
Lateral Resolution averaged over depth (mm) | 2.71 ± 1.40 |
Axial spatial conformity (%) | 2 ± 0.06 |
Dynamic Range (dB) | 98 mm |
Contrast sensitivity | 2.19 |
Quantitative Metrics | Without Clustering | K-Means | SFCM | GMM |
---|---|---|---|---|
Mean PE (%) | 28.7 | 12.3 | 14.9 | 4.2 |
Max PE (%) | 57.2 | 59.1 | 18.8 | 20.9 |
Min PE (%) | 22.4 | 0.011 | 0.017 | 0.001 |
MSE (10) | 37 | 5.5 | 15 | 2.1 |
RMSE (10) | 1.94 | 0.74 | 1.22 | 0.46 |
Time (s) | 0 | 2.72 | 5.7 | 291 |
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Abbas, A.; Neasham, J.; Naqvi, M. Image Formation Algorithms for Low-Cost Freehand Ultrasound Scanner Based on Ego-Motion Estimation and Unsupervised Clustering. Electronics 2023, 12, 3634. https://doi.org/10.3390/electronics12173634
Abbas A, Neasham J, Naqvi M. Image Formation Algorithms for Low-Cost Freehand Ultrasound Scanner Based on Ego-Motion Estimation and Unsupervised Clustering. Electronics. 2023; 12(17):3634. https://doi.org/10.3390/electronics12173634
Chicago/Turabian StyleAbbas, Ayusha, Jeffrey Neasham, and Mohsen Naqvi. 2023. "Image Formation Algorithms for Low-Cost Freehand Ultrasound Scanner Based on Ego-Motion Estimation and Unsupervised Clustering" Electronics 12, no. 17: 3634. https://doi.org/10.3390/electronics12173634
APA StyleAbbas, A., Neasham, J., & Naqvi, M. (2023). Image Formation Algorithms for Low-Cost Freehand Ultrasound Scanner Based on Ego-Motion Estimation and Unsupervised Clustering. Electronics, 12(17), 3634. https://doi.org/10.3390/electronics12173634