Genome Study of α-, β-, and γ-Carbonic Anhydrases from the Thermophilic Microbiome of Marine Hydrothermal Vent Ecosystems
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Identification of α-, β-, and γ-CA Sequences
2.2. Phylogenetic Analysis
2.3. Identification of α-, β-, and γ-CA Genes on the MGEs
2.3.1. Integrons
2.3.2. Genomic Islands (GIs)
2.3.3. Integrative Conjugative Elements (ICEs)
2.3.4. Transposable Elements (TEs), Phages, and Plasmids
3. Results
3.1. Identification of α-, β-, and γ-CA and Protein Sequences
3.2. Phylogenetic Analysis
3.3. Identification of α-, β-, and γ-CA Genes on MGEs
3.3.1. Integrons
3.3.2. Genomic Islands (GIs)
3.3.3. Integrative Conjugative Elements (ICEs), Transposable Elements (TEs), Phages, and Plasmids
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Microorganisms | Integron Type | Integrase | CA Gene |
---|---|---|---|
Cycloclasticus sp. symbiont of Bathymodiolus heckerae Endosymbiont of Riftia pachyptila (vent Ph05) Sulfurovum sp. NBC37-1 | In0 | Intersection tyr intI | - |
Integron 1: CALIN Integron 2: CALIN | - | α-CA β-CA | |
Integron 1: CALIN Integron 2: CALIN | - | - | |
Caldithrix abyssi Hydrogenovibrio crunogenus SP-41 | CALIN | - | - |
Integron 1: CALIN Integron 2: CALIN Integron 3: Complete Integron 4: CALIN | Intersection tyr intI | - | |
Thiomicrospira crunogena XCL-2 Bathymodiolus thermophilus thioautotrophic gill symbiont Endosymbiont of Tevnia jerichonana Halomonas sulfidaeris strain SST4 | Integron 1: CALIN Integron 2: CALIN | - | - |
Integron 1: CALIN Integron 2: CALIN Integron 3: CALIN | - | - | |
CALIN | - | β-CA | |
CALIN | - | - | |
Marinobacter sp. LQ44 | Integron 1: CALIN Integron 2: In0 | Intersection tyr intI | - |
Sulfurimonas autotrophica | Integron 1: In0 Integron 2: CALIN | Intersection tyr intI | - |
Endosymbiont of Bathymodiolus septemdierum | Integron 1: CALIN Integron 2: CALIN Integron 3: In0 Integron 4: CALIN Integron 5: CALIN | Intersection tyr intI | - |
Hydrogenovibrio thermophilus Thermococcus barophilus strain CH5 | Complete | Intersection tyr intI | - |
CALIN | - | - | |
Cycloclasticus sp. symbiont of Bathymodiolus heckerae | In0 | Intersection tyr intI | - |
Endosymbiont of Riftia pachyptila (vent Ph05) | Integron 1: CALIN Integron 2: CALIN | - | α-CA β-CA |
Sulfurovum sp. NBC37-1 | Integron 1: CALIN Integron 2: CALIN | - | - |
Caldithrix abyssi | CALIN | - | - |
Hydrogenovibrio crunogenus SP-41 | Integron 1: CALIN Integron 2: CALIN Integron 3: Complete Integron 4: CALIN | Intersection tyr intI | - |
Thiomicrospira crunogena XCL-2 | Integron 1: CALIN Integron 2: CALIN | - | - |
Bathymodiolus thermophilus thioautotrophic gill symbiont | Integron 1: CALIN Integron 2: CALIN Integron 3: CALIN | - | - |
Endosymbiont of Tevnia jerichonana | CALIN | - | β-CA |
Halomonas sulfidaeris strain SST4 | CALIN | - | - |
Marinobacter sp. LQ44 | Integron 1: CALIN Integron 2: In0 | Intersection tyr intI | - |
Sulfurimonas autotrophica | Integron 1: In0 Integron 2: CALIN | Intersection tyr intI | - |
Endosymbiont of Bathymodiolus septemdierum | Integron 1: CALIN Integron 2: CALIN Integron 3: In0 Integron 4: CALIN Integron 5: CALIN | Intersection tyr intI | - |
Hydrogenovibrio thermophilus | Complete | Intersection tyr intI | - |
Thermococcus barophilus strain CH5 | CALIN | - | - |
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Gheibzadeh, M.S.; Manyumwa, C.V.; Tastan Bishop, Ö.; Shahbani Zahiri, H.; Parkkila, S.; Zolfaghari Emameh, R. Genome Study of α-, β-, and γ-Carbonic Anhydrases from the Thermophilic Microbiome of Marine Hydrothermal Vent Ecosystems. Biology 2023, 12, 770. https://doi.org/10.3390/biology12060770
Gheibzadeh MS, Manyumwa CV, Tastan Bishop Ö, Shahbani Zahiri H, Parkkila S, Zolfaghari Emameh R. Genome Study of α-, β-, and γ-Carbonic Anhydrases from the Thermophilic Microbiome of Marine Hydrothermal Vent Ecosystems. Biology. 2023; 12(6):770. https://doi.org/10.3390/biology12060770
Chicago/Turabian StyleGheibzadeh, Mohammad Sadegh, Colleen Varaidzo Manyumwa, Özlem Tastan Bishop, Hossein Shahbani Zahiri, Seppo Parkkila, and Reza Zolfaghari Emameh. 2023. "Genome Study of α-, β-, and γ-Carbonic Anhydrases from the Thermophilic Microbiome of Marine Hydrothermal Vent Ecosystems" Biology 12, no. 6: 770. https://doi.org/10.3390/biology12060770