Toward a More Comprehensive View of α-Amylase across Decapods Crustaceans
Abstract
:Simple Summary
Abstract
1. Introduction
2. General Features and Activity
3. Molecular Features
3.1. Gene and Transcript Features
3.2. Protein Features
4. Biochemical Features
4.1. Sodium
4.2. Calcium
4.3. pH
4.4. Temperature
4.5. Catalytic Activity
5. Alpha-Amylase Polymorphism
6. Alpha-Amylase Regulation
6.1. Development and Molt Stage
6.2. Feeding Habits and Diet Composition
7. Carbohydrate Digestibility
7.1. In Vitro Digestibility
7.2. In Vivo Digestibility
8. Summary and Open Issues
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Group | Species | Accession No. Genbank | Identity (%) | Nucleotides (pb) |
---|---|---|---|---|
Brachyurans | Eriocheir sinensis | KU301756.1 | 75.6 | 1663 |
Helice tientsinensis | MN964184.1 | 75.39 | 1527 | |
Neohelice granulata | KU531567.1 | 75.04 | 1637 | |
Macrophthalmus pacificus | MN964194.1 | 74.34 | 1533 | |
Gelasimus borealis | MN964240.1 | 76.19 | 1533 | |
Metopograpsus quadridentatus | MN964203.1 | 76.25 | 1533 | |
Parasesarma pictum | MN964222.1 | 76.22 | 1533 | |
Parasesarma affine | MN964213.1 | 76.09 | 1533 | |
Chiromantes dehaani | MN964164.1 | 75.36 | 1533 | |
Sesarmops sinensis | MN964231.1 | 75.21 | 1215 | |
Calappa philargius | MN964146.1 | 69.98 | 1533 | |
Charybdis japonica | MN964155.1 | 76.32 | 1533 | |
Scylla olivacea | GDRN01093055.1 | 75.51 | 1715 | |
Portunus trituberculatus | MN964137.1 | 74.37 | 1533 | |
Penaeids | Marsupenaeus japonicus | KJ147432.1 | 77.95 | 1651 |
Penaeus monodon | KU308415.1 | 66.34 | 2465 | |
Litopenaeus vannamei | KM077131.1 | 66.17 | 2358 | |
Carideans | Crangon crangon | MH055762.1 | 66.43 | 2175 |
Macrobrachium rosenbergii | KM886337.1 | 67.6 | 2282 | |
Astacids | Astacus leptodactylus | KF954216 | 65.69 | 2250 |
Homarus americanus | XM_042364069 | 67.45 | 2434 | |
Procambarus clarkii | MF688642.1 | 67.17 | 2138 | |
Human | Homo sapiens nlknln | M24895.1 | 66.85 | 1612 |
Km | Number of Isoforms | MW (kDa) | Opt. pH | Opt. Temperat.(°C) | NaCl | Ca2+ | References | |
---|---|---|---|---|---|---|---|---|
Crustaceans | ||||||||
Lobsters | ||||||||
Panulirus argus | 0.36 mM * | 2 | 55.5 | 5–6 | 50 | 0.3 mM | ↑ up to 25 mM | [24] |
Panulirus japonicus | 4.9 | [53] | ||||||
Panulirus interruptus | 1 | [54] | ||||||
Jasus edwardsii | 5.5 | [34] | ||||||
Homarus americanus | 41 | 5.2–5.5 | + (0.05–0.1 M) | − | [55,56] | |||
Homarus gammarus | 4.8 | [57] | ||||||
Thenus orientalis | 5.0–5.8 | [58] | ||||||
Shrimps | ||||||||
Litopenaeus vannamei | 7–10 | 7–8 | 40–50 | ↑ up to 1 mM ↓ >5–10 mM | [13,54,59] | |||
Litopenaeus schmitti | 8 | 7 | 40 | ↑ up to 1 mM ↓ >5–10 mM | [13] | |||
Farfantepenaeus subtilis | 9 | 7.5 | 45 | ↑ up to 1 mM ↓ >5–10 mM | [13] | |||
Farfantepenaeus californiensis | 7.5 | 30–40 | 0.01 M | −− | [60] | |||
Penaeus monodon | 2 | 5.4–7 | ++ | [61] | ||||
Penaeus japonicus | 6.8 | 40 | ↑ up to 1 mM | [62] | ||||
Penaeus indicus | 1 | 6.6–7–8 | 37 | [54,59,63] | ||||
Penaeus esculentus | 7 | [64] | ||||||
Penaeus plebejus | 5 | [64] | ||||||
Metapenaeus bennettae | 7 | [64] | ||||||
Metapenaeus monoceros | 7 | 40 | [63] | |||||
Macrobrachium australiense | 5 | [64] | ||||||
Macrobrachium lamarrei | 9.0 × 10−2% | 6.5 | 50 | + | [65] | |||
Palaemon elegans | 7 | 29–78 | [54,66] | |||||
Crayfish | ||||||||
Orconectes virilis | 5.9–6.3 | + | [67] | |||||
Procambarus clarkii | 1 | 55 | 5.8 | 55.1 | [54,68,69] | |||
Cherax quadricanatus | 6 | ↑ up to 15 mM | [70] | |||||
Cherax albidus | 4 | 38, 44, 49, 55 | 6.5 | 25 | [71] | |||
Astacus leptodaytylus | 6 | [54] | ||||||
Crabs | ||||||||
Carcinus maenas | 0.22% | 2 | 30–35 | 6.8 | 40 | ++ | ++ | [54,72] |
Maguimithrax spinosissimus | 1 | 40 | 5–6.5 | 40–60 | − | ↑ up to 2.5 mM | [73] | |
Scylla serrata | 6.5–7 | 50 | [64,74] | |||||
Neohelice granulata | 1.24 mg/mL | 5 | 26–36 | 30–40 | ↑ up to 1.5 M ↓ >1.5 M | ++ | [10] | |
Cytograpsus angulatus | 0.11 mg/mL | 2 | 31, 38 | 5–7 | 30 | [75] | ||
Portunus segnis | 7.5 mg/mL | 45 | 7.5 | 45–65 | − | [76] | ||
Portunus pelagicus | 6.5 | [64] | ||||||
Maja brachydactyla | 4 | 27–68 | [7] | |||||
Uca minax | 1 | 7.3 | 0.075 M | [77] | ||||
Uca pugnax | 1 | 7.3 | 0.1 M | [77] | ||||
Uca pugilator | 1 | 7.3 | 0.1 M | [77] | ||||
Cancer borealis | 7.0 | [6] | ||||||
Cancer irroratus | 7.0 | [6] | ||||||
Isopods | ||||||||
Asellus aquaticus | 10.4 mg/mL | ≈70 | 5.4–5.8 | 60 | ↑ up to 1 M ↓ >1 M | [78] | ||
Amphipods | ||||||||
Gammaruspalustris | 0.045% 0.042% | 5 | 50–69.4 | 7.5 | 30 | ↑ up to 8 mM | [79] | |
Copepods | ||||||||
Acartia clausi. | 4.5 mg/mL | 44 | 6–6.7 | 40 | ↑ up to 0.1 M | [80] | ||
Heliodiaptomus viduus | 1.96 µg/mL−1 | 50 | 5.5–6 | 30 | + | [81] | ||
Other arthropods | ||||||||
Scorpion Scorpio maurus | 1 | 59 | 7 | 50 | ↑ up to 0.2 M | ↑ up to 3 mM | [82] | |
Coleoptera, Morimus funereus | 0.043% | 33 | 5.2 | 45 | ↑ up to 0.2 M | ↑ up to 0.1 mM ↓ >0.1 mM | [83] | |
Coleoptera, Rhyzopertha dominica | 0.098% | 52 | 7.0 | 40 | + | + | [84] | |
Cockroach, Periplaneta americana | 0.50% | 60 | 5.6 | 55 | [85] | |||
Nematods | ||||||||
Helminth, Ascaris suum | 2 | 74, 83 | 7.4 | 40–50 | ↑ up to 0.5 mM | [86] | ||
Anelids | ||||||||
Earthworm, Eisenia fetida | 2 | 63.8, 64 | 5.5 | 45, 35 | [87] | |||
Mollusks | ||||||||
Sea hare, Aplysia kurodai | 0.37 mg/mL 1.42 mg/mL | 2 | 59, 80 | 5.5–6.5 | 40, 55 | ↑ up to 10 mM | [88] | |
Bivalve, Mytilus galloprovincialis | 2 | 66 | 6.5 | 35–40 | + | ↑ up to 15 mM | [89] | |
Bivalve, Haliotis discus discus | 54 | 6.5 | 50 | ↑ up to 2 mM | [90] | |||
Bivalve, Haliotis discus channai | 2 | 58, 82 | 6.1–6.7 | 30 | [91] | |||
Gastropod, Concholepas concholepas | 7 | 50 | ++ | ++ | [92] | |||
Echinoderms | ||||||||
Sea urchin, Strongylocentrotus nudas | 2.28 mM | 6.8 | + | [93] | ||||
Sea urchin, Anthocidaris crassispina | 2.1 mM | 6.9 | [94] | |||||
Fish | ||||||||
Medaka, Oryzias latipes | 1.18 mg/mL | 7.12 | 49 | ↑ up to 0.2 M | [95] | |||
Seabream, Sparus aurata | 1 | 100 | 7-8 | 40–45 | ↓ >0.05 M | [96,97] | ||
Turbot, Scophthalmus maximus | 7 | 35–45 | ↓ >0.05 M | [96] | ||||
Redfish, Sebastes mentella | 4–4.5 | 35–45 | ++ | [96] | ||||
Mullet, Chelon labrosus | 8 | 40 | [98] | |||||
Mammals | ||||||||
Porcine PPAI | 135 mg/mL | 2 | 55.4 | 7.3 | [99] | |||
Human Pancreatic | 1.15 mM * 0.15 mg/mL | 56 | 6.1 | [100,101] | ||||
Human Salivary | 2.22 mM * | 56 | 5.9 | ↑ up to 0.3–0.4 M | ↑ up to 4–5 mM | [100,102] |
Group | Species | Uniprot Code | Length (aa) | Note |
---|---|---|---|---|
Brachyurans | Eriocheir sinensis | A0A173DQD0 | 517 | |
Helice tientsinensis | A0A6G9W2W5 | 509 | Fragment | |
Neohelice granulata | A0A1L6BX60 | 439 | Fragment | |
Macrophthalmus pacificus | A0A6G9W2X5 | 511 | Fragment | |
Gelasimus borealis | A0A6G9W3V1 | 511 | Fragment | |
Metopograpsus quadridentatus | A0A6G9W6B4 | 511 | Fragment | |
Parasesarma pictum | A0A6G9W466 | 511 | Fragment | |
Parasesarma affine | A0A6G9W6C2 | 511 | Fragment | |
Chiromantes dehaani | A0A6G9W2T8 | 511 | Fragment | |
Sesarmops sinensis | A0A6G9W480 | 405 | Fragment | |
Calappa philargius | A0A6G9W4A8 | 511 | Fragment | |
Charybdis japonica | A0A6G9W484 | 511 | Fragment | |
Scylla olivacea | A0A0P4W0X7 | 517 | ||
Portunus trituberculatus | A0A6G9W4W3 | 511 | Fragment | |
Penaeids | Marsupenaeus japonicus | X2KWV9 | 512 | |
Penaeus monodon | A0A172GH45 | 724 | ||
Litopenaeus vannamei | A0A076L7X4 | 724 | ||
Carideans | Crangon crangon | A0A2Z4BXI3 | 724 | |
Macrobrachium rosenbergii | A0A0H3WET4 | 706 | ||
Astacids | Astacus leptodactylus | A0A120GV93 | 696 | |
Procambarus clarkii | A0A2Z5HVE6 | 713 | Fragment | |
Palinuridae | Panulirus argus nlknln | A0A0G4DIJ9 | 513 |
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Rodríguez-Viera, L.; Alpízar-Pedraza, D.; Mancera, J.M.; Perera, E. Toward a More Comprehensive View of α-Amylase across Decapods Crustaceans. Biology 2021, 10, 947. https://doi.org/10.3390/biology10100947
Rodríguez-Viera L, Alpízar-Pedraza D, Mancera JM, Perera E. Toward a More Comprehensive View of α-Amylase across Decapods Crustaceans. Biology. 2021; 10(10):947. https://doi.org/10.3390/biology10100947
Chicago/Turabian StyleRodríguez-Viera, Leandro, Daniel Alpízar-Pedraza, Juan Miguel Mancera, and Erick Perera. 2021. "Toward a More Comprehensive View of α-Amylase across Decapods Crustaceans" Biology 10, no. 10: 947. https://doi.org/10.3390/biology10100947