A 16 × 16 Patch-Based Deep Learning Model for the Early Prognosis of Monkeypox from Skin Color Images
Abstract
:1. Introduction
- Genetic Diversity: The monkeypox virus has genetic variety, similarly to other viruses. Mutations that occur during viral replication and recombination activities give rise to this variety. Various strains of MPXV with different genetic compositions have been identified through genomic investigations. These variations may have an effect on host range, transmissibility, and pathogenicity. Through genome sequencing and analysis, researchers are able to follow the evolution of the virus, gaining insight into its epidemiology.
- Transmission Patterns: Non-human primates, especially African rodents, are the main reservoir hosts for monkeypox infections. Direct contact with diseased animals or their body fluids, as well as contact with contaminated objects or surfaces, can result in human diseases. Although it happens less frequently, human-to-human transmission can happen when skin lesions or respiratory droplets come into contact with one another. Human behavior, healthcare practices, vaccine coverage, and population density are some of the factors that affect the spread of the disease.
- Globalization and Travel: Globalization and increased travel facilitate the spread of infectious diseases, including monkeypox. The importation of infected animals or humans can introduce the virus to new regions. Surveillance systems at ports of entry help detect and contain imported cases, preventing local transmission.
2. Literature Review
- The implementation of augmentation techniques was considered essential to ensure the model proper and consistent training with balanced class representation.
- A state-of-the-art vision transformer model was employed, utilizing a transfer learning approach to detect instances of monkeypox from skin images.
- An empirical exploration and adjustment of hyperparameters related to the proposed model and its training process were carried out to optimize performance.
- The proposed model’s performance was systematically compared with that of other deep learning models and relevant studies. This comparative analysis aimed to derive insights into the significance of the proposed model within the broader research context.
3. Proposed Methodology
3.1. Dataset Description
3.2. Data Pre-Processing
3.3. Proposed Architecture
4. Experimental Results and Discussion
4.1. Evaluation Measures
4.2. Environmental Setup
4.3. Hyper-Parameter Settings
4.4. Results Analysis and Discussion
4.5. Comparative and Ablation Analysis
5. Conclusions
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Class | Split | Total (before Augmentation) | Train (before Augmentation) | Total (after Augmentation) | Train (after Augmentation) |
---|---|---|---|---|---|
Monkeypox | Train | 650 | 249 | 1836 | 498 |
Chickenpox | 77 | 385 | |||
Measles | 61 | 427 | |||
Normal | 263 | 526 | |||
Monkeypox | Test | 120 | 30 | 120 | 30 |
Chickenpox | 30 | 30 | |||
Measles | 30 | 30 | |||
Normal | 30 | 30 |
Layer Type | Parameters |
---|---|
Architecture | Patches and Global Feature Extraction-Based ViT |
Optimizer | Adam |
Learning Rate | 0.0001 |
Epochs | 10 |
Batch Size | 2 × 10−5 |
Patches | (16,16) |
Hidden Size for Embedding Dimension | 768 |
Number of Channels | 3 |
Number of Head Layers | 12 |
Number of Layers | 36 |
Dropout for Encoder | 0.1 |
Image Size | (224,224) |
Classification Report—Monkeypox Detection | ||||
---|---|---|---|---|
Precision | Recall | F1 Score | Support | |
0 | 0.93 | 0.90 | 0.92 | 30 |
1 | 0.90 | 0.93 | 0.92 | 30 |
2 | 0.90 | 0.93 | 0.92 | 30 |
3 | 1.00 | 0.97 | 0.98 | 30 |
accuracy | 0.93 | 120 | ||
Macro Avg | 0.93 | 0.93 | 0.93 | 120 |
Weighted Avg | 0.93 | 0.93 | 0.93 | 120 |
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© 2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
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Arshed, M.A.; Rehman, H.A.; Ahmed, S.; Dewi, C.; Christanto, H.J. A 16 × 16 Patch-Based Deep Learning Model for the Early Prognosis of Monkeypox from Skin Color Images. Computation 2024, 12, 33. https://doi.org/10.3390/computation12020033
Arshed MA, Rehman HA, Ahmed S, Dewi C, Christanto HJ. A 16 × 16 Patch-Based Deep Learning Model for the Early Prognosis of Monkeypox from Skin Color Images. Computation. 2024; 12(2):33. https://doi.org/10.3390/computation12020033
Chicago/Turabian StyleArshed, Muhammad Asad, Hafiz Abdul Rehman, Saeed Ahmed, Christine Dewi, and Henoch Juli Christanto. 2024. "A 16 × 16 Patch-Based Deep Learning Model for the Early Prognosis of Monkeypox from Skin Color Images" Computation 12, no. 2: 33. https://doi.org/10.3390/computation12020033
APA StyleArshed, M. A., Rehman, H. A., Ahmed, S., Dewi, C., & Christanto, H. J. (2024). A 16 × 16 Patch-Based Deep Learning Model for the Early Prognosis of Monkeypox from Skin Color Images. Computation, 12(2), 33. https://doi.org/10.3390/computation12020033