Interactions Between Leaf Area Dynamics and Vineyard Performance, Environment, and Viticultural Practices
Abstract
:1. Introduction
2. Materials and Methods
2.1. Study Site
2.2. Experiment Design
2.3. Data Collection and Feature Engineering
2.3.1. Field Data
Stage 0 Budbreak–Flowering (07–69) | Stage 1 Flowering–Bunch Closure (69–79) | Stage 2 Bunch Closure–Veraison (79–85) | Stage 3 Veraison–Harvest (85–89) | Post-Harvest (89–91) | Pruning | |
---|---|---|---|---|---|---|
Range of start dates | 7 March– 6 April | 18 April– 14 May | 30 May– 11 June | 23 June– 18 July | 27 July– 19 August | 5 February–7 March |
Mean start date | 19 March | 6 May | 4 June | 29 June | 9 August | 22 February |
Average duration (days) | 48 | 29 | 25 | 41 | 52 | - |
2.3.2. Meteorological Data
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- Total and Spring precipitation: the accumulated precipitation (mm) during the winter and spring preceding each growing season. The total precipitation and spring precipitation were accumulated from 1 October to 30 April and from 1 March to 30 April of each winter and spring, respectively. The range of values during the experimental period was very wide (250–555 mm in total, 24–134 mm in spring, Table 2), with quite high CVs (21.44% and 50.83%).
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- Temperature: minimum, maximum, and mean daily temperature values were averaged across phenological stages for each season.
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- Vapor pressure deficit (VPD): daily VPD values were calculated using the Magnus formula [34] and minimum, maximum, and mean daily values were averaged across phenological stages for each growing season. The calculation was performed as follows:
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- Total chilling hours: the accumulated number of cool hours during each winter preceding the growing seasons. They were calculated using the scoring system: hourly temperature below 7 °C = 1 chilling hour; between 7 °C and 10 °C = 0.5 chilling hour; between 10 °C and 18 °C = 0; and above 18 °C = − 1 chilling hour. The daily chilling hours were then summed, while negative chilling hours were counted as 0. Daily chilling hours were accumulated between November and April and provided as total seasonal chilling hours (Table 2). During the experimental period, the values ranged between 197 and 571 chilling hours, with a CV of 31.3%.
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- Reference evapotranspiration (ETo): this was calculated using the FAO Penman–Monteith equation [28]. The daily mean values were averaged for each phenological stage during each growing season. Values ranged between 2.3 and 8.2 mm d−1, with CV = 27.5%.
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- Wind speed: hourly means were averaged for each phenological stage during each growing season, ranging between 4.5 and 7.4 mm s−1.
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- Mean radiation: the hourly values were summed into daily records, and further averaged on the phenological stage scale. Values ranged between 14.2 and 28 MJ m−2 d−1.
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- Relative humidity (RH): mean daily RH values were averaged for each phenological stage. Values ranged from 50% to 78% with a low variance (CV = 10.45%).
Category | Variable | Min | Max | Median | Mean ± SD | CV (%) |
---|---|---|---|---|---|---|
Yield components | Clusters per vine | 23 | 110 | 62 | 64.17 ± 19.28 | 30.05 |
Yield (t ha−1) | 5.19 | 34.81 | 17.57 | 18.16 ± 5.85 | 32.2 | |
Cluster weight (g) | 51.66 | 199 | 121 | 123.79 ± 25.91 | 20.93 | |
Pruning components | Canes per vine | 16 | 48 | 32 | 32.33 ± 6.11 | 18.91 |
Pruning weight (kg) | 0.19 | 2.54 | 1.16 | 1.23 ± 0.47 | 38.27 | |
Cane weight (g) | 0 | 78.89 | 36.03 | 38.4 ± 14.45 | 37.63 | |
Leaf area index | Mean LAI at Stage 0 (m2 m−2) | 0.31 | 0.78 | 0.52 | 0.52 ± 0.1 | 19 |
Mean LAI at Stage 1 (m2 m−2) | 0.77 | 1.92 | 1.19 | 1.22 ± 0.24 | 19.3 | |
Mean LAI at Stage 2 (m2 m−2) | 0.7 | 2.48 | 1.4 | 1.39 ± 0.36 | 26.02 | |
Mean LAI at Stage 3 (m2 m−2) | 0.78 | 2.56 | 1.33 | 1.41 ± 0.38 | 27.21 | |
Mean LAI at Post-harvest (m2 m−2) | 0.6 | 2 | 1.2 | 1.22 ± 0.27 | 21.96 | |
Irrigation treatments | Irrigation per season (mm) | 191.7 | 710.8 | 397.1 | 396.4 ± 126.6 | 31.93 |
Meteorology (at the phenological stage scale) | Total (seasonal) precipitation (mm) | 250.8 | 555.3 | 441.8 | 421.53 ± 90.39 | 21.44 |
Spring precipitation (mm) | 23.8 | 134.4 | 73.9 | 72.09 ± 36.64 | 50.83 | |
Mean temperature (°C) | 9.62 | 26.64 | 22.99 | 21.26 ± 4.76 | 22.39 | |
Maximum temperature (°C) | 13.37 | 36.93 | 30.06 | 27.78 ± 5.98 | 21.54 | |
Minimum temperature (°C) | 6.79 | 21.74 | 17.74 | 16.57 ± 4.2 | 25.36 | |
Mean vapor pressure deficit (kPa) | 0.3 | 1.96 | 1.17 | 1.11 ± 0.37 | 33.85 | |
Minimum vapor pressure deficit (kPa) | 0.02 | 0.45 | 0.18 | 0.18 ± 0.1 | 57.03 | |
Maximum vapor pressure deficit (kPa) | 0.64 | 4.77 | 2.82 | 2.57 ± 0.95 | 37.07 | |
Chilling hours | 197.5 | 571.5 | 409.25 | 390.5 ± 122.14 | 31.28 | |
Mean ETo (mm day−1) | 2.32 | 8.16 | 6.69 | 6.07 ± 1.67 | 27.52 | |
Mean wind speed (m s−1) | 4.53 | 7.4 | 5.62 | 5.72 ± 0.62 | 10.81 | |
Mean radiation (MJ m−2 day−1) | 14.18 | 28.11 | 22.3 | 22.93 ± 3.92 | 17.08 | |
Mean relative humidity (%) | 49.61 | 77.89 | 66.69 | 65.97 ± 6.89 | 10.45 |
2.4. Modeling Framework
2.4.1. Irrigation and Leaf Area Variations Among Seasons and Treatments
2.4.2. LAI Associations to Environmental and Irrigation Factors
2.4.3. LAI Phenology Effects on Reproductive and Pruning Components
- Yield and pruning components were separately analyzed against LAI values at each phenological stage, and against LAI values from the previous season. This analysis was conducted using the generalized additive model (GAM), to enable quantifying the non-linearity of some of the relationships. GAM is an additive model technique where the influence of each covariate is captured by a smooth function [41]. These smooth functions can adapt to both linear and non-linear relationships, providing greater flexibility compared to traditional linear models. The degree of smoothness in the model is controlled by a smoothing parameter, which helps to prevent overfitting by penalizing overly complex models [42]. In this study, the spline function was used for smoothing the covariates, and Gaussian distribution was assumed. All GAMs were applied using 8 knots to avoid overfitting the relationships. The coefficient of determination (R2) was extracted from each model to define the proportion of variance in the response variable explained by the model. In addition, for each model the partial dependent plot was extracted to visualize the patterns of relationship between LAI and each component. GAMs were fitted using the “mgcv” package in R [43], and the partial plots were produced using the “pdp” package [44]. Heatmaps were subsequently produced based on R2 values to enable comparison between the strengths of the different models, while incorporating the partial plots to illustrate the nature of the relationships between LAI and the respective components. The plots were generated using “ggplot2” package in R [45], with coding support from ChatGPT-4-turbo. The codes were checked and revised to produce the desired figures.
- To determine the relative importance of LAI values at different stages (including the current and previous season) on yield and pruning components, we employed the eXtreme Gradient Boosting (XGBoost) algorithm. XGBoost is a powerful ensemble learning method that combines multiple decision trees to create a robust predictive model in an iterative manner, with each subsequent tree focusing on correcting the errors of its predecessors. XGBoost incorporates regularization techniques to prevent overfitting and can effectively handle complex relationships between variables [46]. Given the potential non-linearity and interactions between LAI at different stages and the yield/pruning components, XGBoost was selected for its ability to capture these complex relationships and its strong predictive performance. The model was trained using 100 boosting rounds with the squared error objective function, a learning rate of 0.3, maximum tree depth of 6, and a uniform sampling method. Finally, the relative contribution of the features (e.g., LAI at the different stages at current and previous season) were extracted and visualized. The XGBoost algorithm was applied using the “xgboost” package in R [47] and the results were visualized using “ggplot2” [45]. To evaluate model reliability, a validation process was conducted for each yield and pruning component. The dataset was randomly split into training (80%) and testing (20%) subsets. The model was trained on the training set and then used to predict the component values for the test set. Model accuracy was assessed using the following metrics:
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- Pearson correlation (r), which measures the strength and direction of the linear relationship between predicted and observed values. Higher absolute values of ‘r’ indicate stronger correlations.
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- Paired t-test (t), which evaluates whether the mean predicted values differ significantly from the mean observed values in the test set.
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- Kolmogorov–Smirnov (D), which compares the distribution of predicted values to the distribution of observed values in the test set to assess whether they are statistically different.
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- Mean absolute error (MAE), which measures the average absolute difference between predicted and observed values. MAE was further normalized to the range of the test set to provide the error in percentage. MAE was calculated using the “Metrics” library in R [48].
3. Results
3.1. Quantified Irrigation and Leaf Area Variations Among Seasons and Treatments
3.2. Quatification of LAI Associations to Environmental and Irrigation Factors
3.3. Modeled LAI Phenology Effects on Reproductive and Pruning Components
4. Discussion
4.1. Influence of Water Availability on Leaf Area
4.2. Environmental and Seasonal Drivers of Leaf Area Variability
4.3. Effects of Leaf Area on Yield and Pruning Components
4.4. Practical Implications for Vineyard Management
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
ETo | Reference evapotranspiration |
ETc | Crop evapotranspiration |
LAI | Leaf area index |
VPD | Vapor pressure deficit |
MAE | Mean absolute error |
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Treatment | Mean LAI (mm2 mm−2) | Mean Irrigation Amount (mm d−1) | Yield (t ha−1) |
---|---|---|---|
Low | 1.02 ± 0.47 d | 1.85 ± 0.78 e | 16.9 ± 7.43 e |
Medium | 1.17 ± 0.56 b | 2.85 ± 0.96 b | 19 ± 6.55 a |
High | 1.28 ± 0.65 a | 3.8 ± 1.24 a | 18.7 ± 6.51 b |
Low to High | 1.08 ± 0.49 c | 2.57 ± 1.2 c | 18.3 ± 5.64 c |
High to Low | 1.17 ± 0.56 b | 2.42 ± 0.99 d | 18 ± 5.28 d |
Season | Mean LAI (mm2 mm−2) | Mean Irrigation Amount (mm d−1) | Yield (t ha−1) |
---|---|---|---|
2017 | 0.93 ± 0.4 g | 2.00 ± 0.85 e | 13.4 ± 0.32 f |
2018 | 1.02 ± 0.4 f | 1.96 ± 0.97 e | 15.3 ± 0.37 e |
2019 | 1.07 ± 0.49 e | 2.60 ± 1.05 d | 21.4 ± 0.45 c |
2020 | 1.13 ± 0.54 d | 2.89 ± 1.24 c | 21.9 ± 0.48 b |
2021 | 1.25 ± 0.62 c | 3.13 ± 1.32 b | 13.2 ± 0.33 g |
2022 | 1.29 ± 0.63 b | 3.05 ± 1.1 b | 17.0 ± 0.48 d |
2023 | 1.34 ± 0.65 a | 3.36 ± 1.2 a | 24.8 ± 0.72 a |
Metric | n | Correlation | t-Test (p-Value) | KS Test (p-Value) | MAE (Normalized to the Range) |
---|---|---|---|---|---|
Clusters per vine | train = 350; test = 88 | 66.82 | t = −0.127 (p = 0.899) | D = 0.136 (p = 0.387) | 11.45 (14.49%) |
Yield (t ha−1) | train = 372; test = 94 | 62.16 | t = −0.069 (p = 0.945) | D = 0.17 (p = 0.131) | 40.3 (13.82%) |
Cluster weight (g) | train = 370; test = 92 | 39.46 | t = −0.101 (p = 0.92) | D = 0.239 (p = 0.01) | 22.5 (17.5%) |
Canes per vine | train = 256; test = 64 | 8.69 | t = −0.211 (p = 0.833) | D = 0.185 (p = 0.211) | 5.72 (18.46%) |
Pruning weight (kg) | train = 319; test = 80 | 52.66 | t = 0.529 (p = 0.598) | D = 0.162 (p = 0.241) | 0.346 (16.47%) |
Cane weight (g) | train = 265; test = 68 | 53.95 | t = 1.408 (p = 0.162) | D = 0.235 (p = 0.05) | 10.1 (15.81%) |
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Netzer, Y.; Ohana-Levi, N. Interactions Between Leaf Area Dynamics and Vineyard Performance, Environment, and Viticultural Practices. Agriculture 2025, 15, 618. https://doi.org/10.3390/agriculture15060618
Netzer Y, Ohana-Levi N. Interactions Between Leaf Area Dynamics and Vineyard Performance, Environment, and Viticultural Practices. Agriculture. 2025; 15(6):618. https://doi.org/10.3390/agriculture15060618
Chicago/Turabian StyleNetzer, Yishai, and Noa Ohana-Levi. 2025. "Interactions Between Leaf Area Dynamics and Vineyard Performance, Environment, and Viticultural Practices" Agriculture 15, no. 6: 618. https://doi.org/10.3390/agriculture15060618
APA StyleNetzer, Y., & Ohana-Levi, N. (2025). Interactions Between Leaf Area Dynamics and Vineyard Performance, Environment, and Viticultural Practices. Agriculture, 15(6), 618. https://doi.org/10.3390/agriculture15060618