Fujifilm SILVAMP TB-LAM for the Diagnosis of Tuberculosis in Nigerian Adults
Abstract
1. Introduction
2. Materials and Methods
3. Results
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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All (n = 204) | Not TB (n = 159) | Bact + TB (n = 45) | p-Value | ||
---|---|---|---|---|---|
Age | mean (SD) | 37.0 (12.8) | 37.65 (13.0) | 34.60 (12.0) | 0.160 |
Sex | Male | 95 (46.6%) | 69 (43.4%) | 26 (57.8%) | 0.088 |
Female | 109 (53.4%) | 90 (56.6%) | 19 (42.2%) | ||
HIV | Negative | 133 (65.2%) | 98 (61.6%) | 35 (77.8%) | 0.087 |
Positive | 70 (34.3%) | 60 (37.7%) | 10 (22.2%) | ||
Unknown | 1 (0.5%) | 1 (0.6%) | 0 (0.0%) | ||
Culture | Negative | 155 (76.0%) | 151 (95.0%) a | 4 (8.9%) a | <0.01 |
Positive | 37 (18.1%) | 0 (0.0%) a | 37 (82.2%) a | ||
Contaminated | 12 (5.9%) | 8 (5.0%) | 4 (8.9%) | ||
Xpert | Negative | 164 (80.4%) | 159 (100%) a | 5 (11.1%) a | <0.01 |
Positive | 40 (19.6%) | 0 (0.0%) a | 40 (88.9%) a |
All | HIV Negative | HIV Positive | ||||||
---|---|---|---|---|---|---|---|---|
FujiLAM | Negative n (%) | Positive n (%) | Invalid n (%) | Negative n (%) | Positive n (%) | Negative n (%) | Positive n (%) | Invalid n (%) |
Bact + TB a | 15 (33.3%) | 30 (66.7%) | 0 (0.0%) | 12 (34.3%) | 23 (65.7%) | 3 (30.0%) | 7 (70.0%) | 0 (0.0%) |
(B +) male | 9 (34.6%) | 17 (65.4%) | 0 (0.0%) | 7 (35.0%) | 13 (65.0%) | 2 (33.3%) | 4 (66.7%) | 0 (0.0%) |
(B +) female | 6 (31.6%) | 13 (68.4%) | 0 (0.0%) | 5 (33.3%) | 10 (66.7%) | 1 (25.0%) | 3 (75.0%) | 0 (0.0%) |
Culture pos | 11 (29.7%) | 26 (70.3%) | 0 (0.0%) | 9 (30.0%) | 21 (70.0%) | 2 (28.6%) | 5 (71.4%) | 0 (0.0%) |
Xpert pos | 11 (27.5%) | 29 (72.5%) | 0 (0.0%) | 11 (32.4%) | 23 (67.6%) | 0 (%) | 6 (100%) | 0 (0.0%) |
High | 3 (23.1%) | 10 (76.9%) | 0 (0.0%) | 3 (27.3%) | 8 (72.7%) | 0 (%) | 2 (100%) | 0 (0.0%) |
Medium | 5 (29.4%) | 12 (70.6%) | 0 (0.0%) | 5 (35.7%) | 9 (64.3%) | 0 (%) | 3 (100%) | 0 (0.0%) |
Low | 0 (%) | 3 (100%) | 0 (0.0%) | 0 (0.0%) | 2 (100%) | 0 (%) | 1 (100%) | 0 (0.0%) |
Very Low | 3 (42.9%) | 4 (57.1%) | 0 (0.0%) | 3 (42.9%) | 4 (57.1%) | 0 (%) | 0 (0.0%) | 0 (0.0%) |
Culture neg | 143 (92.2%) | 8 (5.2%) | 4 (2.6%) | 92 (97.9%) | 2 (2.1%) | 51 (85.0%) | 5 (8.3%) | 4 (6.7%) |
Culture cont | 10 (83.3%) | 2 (16.7%) | 0 (0.0%) | 8 (88.9%) | 1 (11.1%) | 2 (66.7%) | 1 (33.3%) | 0 (0.0%) |
Xpert neg | 153 (93.3%) | 7 (4.3%) | 4 (2.4%) | 98 (99.0%) | 1 (1.0%) | 55 (85.9%) | 5 (7.8%) | 4 (6.3%) |
Not TB b | 149 (93.7%) | 6 (3.8%) | 4 (2.5%) | 97 (99.0%) | 1 (1.0%) | 52 (86.7%) | 4 (6.7%) | 4 (6.7%) |
Total | 164 (80.4%) | 36 (17.6%) | 4 (2.0%) | 109 (82.0%) | 24 (18.0%) | 55 (78.6%) | 11 (15.7%) | 4 (5.7%) |
All | HIV Negative | HIV Positive | ||||
---|---|---|---|---|---|---|
Sensitivity [n/N, %, 95% CI] | Specificity [n/N, %, 95% CI] | Sensitivity [n/N, %, 95% CI] | Specificity [n/N, %, 95% CI] | Sensitivity [n/N, %, 95% CI] | Specificity [n/N, %, 95% CI] | |
Bact + TB a | 30/45, 66.7%, 51–80 | 153/159, 96.2%, 92–98 | 23/35, 65.7%, 48–80 | 97/98, 99.0%, 94–100 | 7/10, 70.0%, 35–92 | 56/60, 93.3%, 83–98 |
Culture | 26/37, 70.3%, 53–84 | 147/155, 94.8%, 90–98 | 21/30, 70.0%, 50–85 | 92/94, 97.9%, 92–100 | 5/7, 71%, 31–95 | 55/60, 91.7%, 81–97 |
Xpert | 29/40, 72.5%, 56–85 | 157/164, 95.7%, 91–98 | 23/34, 67.6%, 49–82 | 98/99, 99.0%, 94–100 | 6/6, 100%, 52–100 | 59/64, 92.2%, 82–97 |
PPV [n/N, %, 95% CI] | NPV [n/N, %, 95% CI] | PPV [n/N, %, 95% CI] | NPV [n/N, %, 95% CI] | PPV [n/N, %, 95% CI] | NPV [n/N, %, 95% CI] | |
Bact + TB a | 30/36, 83%, 67–94 | 153/173, 88%, 83–93 | 23/24, 96%, 79–99 | 97/109, 89%, 82–94 | 7/11, 63%, 31–89 | 56/59, 94%, 86–99 |
HIV Viral Load | |||||
---|---|---|---|---|---|
Undetected | <40 cps/mL | 40–107 cps/mL | Indeterminate | Missing | |
Bact + TB a | 1/1 (100%) | 1/2 (50%) | 3/4 (75%) | 0/0 (0%) | 2/3 (67%) |
Culture pos | 0/0 (0%) | 1/2 (50%) | 3/3 (100%) | 0/0 (0%) | 1/2 (50%) |
Xpert pos | 1/1 (100%) | 1/1 (100%) | 2/2 (100%) | 0/0 (0%) | 2/2 (100%) |
High | 0/0 (0%) | 0/0 (0%) | 1/1 (100%) | 0/0 (0%) | 1/1 (100%) |
Medium | 1/1 (100%) | 0/0 (0%) | 1/1 (100%) | 0/0 (0%) | 1/1 (100%) |
Low | 0/0 (0%) | 1/1 (100%) | 0/0 (0%) | 0/0 (0%) | 0/0 (0%) |
Very Low | - | - | - | - | - |
Culture neg | 1/10 (10%) | 0/14 (0%) | 4/28 (14%) | 0/3 (0%) | 0/5 (0%) |
Culture contaminated | 0/1 (0%) | 0/0 (0%) | 0/1 (0%) | 0/0 (0%) | 1/1 (100%) |
Xpert neg | 0/10 (0%) | 0/15 (0%) | 5/30 (17%) | 0/3 (0%) | 0/6 (0%) |
Not TB b | 0/10 (0%) | 0/14 (0%) | 4/28 (14%) | 0/3 (0%) | 0/5 (0%) |
Bact + TB | |||||
Sensitivity | 100%, 0.05–1 | 50%, 0.03–1 | 75%, 0.2–1 | 0% | 67%, 0.1–1 |
Not TB | |||||
Specificity | 100%, 0.7–1 | 100%, 0.7–1 | 86%, 0.7–1 | 100%, 0.3–1 | 100%, 0.5–1 |
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Comella-del-Barrio, P.; Bimba, J.S.; Adelakun, R.; Kontogianni, K.; Molina-Moya, B.; Osazuwa, O.; Creswell, J.; Cuevas, L.E.; Domínguez, J. Fujifilm SILVAMP TB-LAM for the Diagnosis of Tuberculosis in Nigerian Adults. J. Clin. Med. 2021, 10, 2514. https://doi.org/10.3390/jcm10112514
Comella-del-Barrio P, Bimba JS, Adelakun R, Kontogianni K, Molina-Moya B, Osazuwa O, Creswell J, Cuevas LE, Domínguez J. Fujifilm SILVAMP TB-LAM for the Diagnosis of Tuberculosis in Nigerian Adults. Journal of Clinical Medicine. 2021; 10(11):2514. https://doi.org/10.3390/jcm10112514
Chicago/Turabian StyleComella-del-Barrio, Patricia, John S. Bimba, Ramota Adelakun, Konstantina Kontogianni, Bárbara Molina-Moya, Okoedoh Osazuwa, Jacob Creswell, Luis E. Cuevas, and José Domínguez. 2021. "Fujifilm SILVAMP TB-LAM for the Diagnosis of Tuberculosis in Nigerian Adults" Journal of Clinical Medicine 10, no. 11: 2514. https://doi.org/10.3390/jcm10112514
APA StyleComella-del-Barrio, P., Bimba, J. S., Adelakun, R., Kontogianni, K., Molina-Moya, B., Osazuwa, O., Creswell, J., Cuevas, L. E., & Domínguez, J. (2021). Fujifilm SILVAMP TB-LAM for the Diagnosis of Tuberculosis in Nigerian Adults. Journal of Clinical Medicine, 10(11), 2514. https://doi.org/10.3390/jcm10112514