Possible Mechanisms of mRNA-LNP Degradation: A Comprehensive Review
Abstract
1. Introduction
2. Key Component of the Drug Substance: mRNA
3. Key Component of the Delivery Vehicle: Lipid Nanoparticles (LNPs)
4. mRNA-LNP Vaccine Degradation Mechanisms
4.1. mRNA Degradation Mechanisms
4.1.1. Structural/Functional Elements
4.1.2. Hydrolysis of the Phosphodiester Backbone
4.1.3. Oxidation and Other Chemical Degradations
4.1.4. Enzymatic Degradation
4.2. mRNA Degradation: Key Factors
4.2.1. Temperature
| mRNA Vaccine | Frozen (Long-Term Storage) | Frozen Storage Duration | Refrigerated Storage (2–8 °C) | Room Temperature Storage |
|---|---|---|---|---|
| Comirnaty (Pfizer-BioNTech), 2025–2026 | −90 to −60 °C | Until labeled expiry date when stored continuously frozen | Up to 10 weeks after thawing | Up to 12 h total, including thawing and handling |
| Spikevax (Moderna), 2025–2026 | −50 to −15 °C | Until labeled expiry date when stored continuously frozen | Up to 60 days after thawing | 8–25 °C for up to 12 h |
| CVnCoV (CureVac) | −60 °C | Up to 3 months (development-stage data) | Not established | Not established |
| BNT162b2 (early clinical formulation) | −70 °C | Up to 6 months (early formulation) | Limited stability data during development | Limited stability data |
4.2.2. Light Exposure
4.2.3. pH
4.2.4. Moisture
4.3. LNP Degradation Mechanisms
4.3.1. Chemical Degradation of LNPs
LNP Hydrolysis
LNP Oxidation
4.3.2. Physical Instability of LNPs
4.4. LNP Degradation: Key Factors
4.4.1. Temperature
4.4.2. pH, pKa and Buffer Composition
4.4.3. Moisture
4.4.4. Composition and Quality of Lipids
4.4.5. Mechanical Stress
4.4.6. Freeze–Thaw Cycles
5. Stabilization Strategies to Overcome Instability
5.1. Excipient and Buffer Optimization
5.2. Lipid and Sequence Engineering
5.3. Solid-State Formulation: Lyophilization and Drying Approaches
5.4. Process and Container Controls
6. Analytical Methods for Assessing mRNA-LNP Integrity and Quality
6.1. mRNA Integrity and Purity
6.2. mRNA Quantification and Encapsulation Efficiency
6.3. Particle Size, Polydispersity, and Morphology
6.4. Lipid Degradation, Impurities, and Apparent pKa
6.5. Biological Potency
6.6. The Need for Orthogonal Characterization
7. Conclusions and Future Perspectives
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- Kowalski, P.S.; Rudra, A.; Miao, L.; Anderson, D.G. Delivering the Messenger: Advances in Technologies for Therapeutic MRNA Delivery. Mol. Ther. 2019, 27, 710–728. [Google Scholar] [CrossRef] [PubMed]
- Polack, F.P.; Thomas, S.J.; Kitchin, N.; Absalon, J.; Gurtman, A.; Lockhart, S.; Perez, J.L.; Pérez Marc, G.; Moreira, E.D.; Zerbini, C.; et al. Safety and Efficacy of the BNT162b2 MRNA COVID-19 Vaccine. N. Engl. J. Med. 2020, 383, 2603–2615. [Google Scholar] [CrossRef] [PubMed]
- Baden, L.R.; El Sahly, H.M.; Essink, B.; Kotloff, K.; Frey, S.; Novak, R.; Diemert, D.; Spector, S.A.; Rouphael, N.; Creech, C.B.; et al. Efficacy and Safety of the MRNA-1273 SARS-CoV-2 Vaccine. N. Engl. J. Med. 2021, 384, 403–416. [Google Scholar] [CrossRef] [PubMed]
- Cheng, F.; Wang, Y.; Bai, Y.; Liang, Z.; Mao, Q.; Liu, D.; Wu, X.; Xu, M. Research Advances on the Stability of MRNA Vaccines. Viruses 2023, 15, 668. [Google Scholar] [CrossRef] [PubMed]
- Houseley, J.; Tollervey, D. The Many Pathways of RNA Degradation. Cell 2009, 136, 763–776. [Google Scholar] [CrossRef] [PubMed]
- Lee, B.Y.; Wedlock, P.T.; Haidari, L.A.; Elder, K.; Potet, J.; Manring, R.; Connor, D.L.; Spiker, M.L.; Bonner, K.; Rangarajan, A.; et al. Economic Impact of Thermostable Vaccines. Vaccine 2017, 35, 3135–3142. [Google Scholar] [CrossRef] [PubMed]
- Khan, M.F.H.; Baudin, F.; Perumal, A.S.; Kamen, A.A. Freeze-Drying of MRNA-LNPs Vaccines: A Review. Vaccines 2025, 13, 853. [Google Scholar] [CrossRef] [PubMed]
- Uddin, M.N.; Roni, M.A. Challenges of Storage and Stability of MRNA-Based COVID-19 Vaccines. Vaccines 2021, 9, 1033. [Google Scholar] [CrossRef] [PubMed]
- Schoenmaker, L.; Witzigmann, D.; Kulkarni, J.A.; Verbeke, R.; Kersten, G.; Jiskoot, W.; Crommelin, D.J.A. MRNA-Lipid Nanoparticle COVID-19 Vaccines: Structure and Stability. Int. J. Pharm. 2021, 601, 120586. [Google Scholar] [CrossRef] [PubMed]
- Zhao, P.; Hou, X.; Yan, J.; Du, S.; Xue, Y.; Li, W.; Xiang, G.; Dong, Y. Long-Term Storage of Lipid-like Nanoparticles for MRNA Delivery. Bioact. Mater. 2020, 5, 358–363. [Google Scholar] [CrossRef] [PubMed]
- Sato, M.; Samaridou, E.; Beck-Broichsitter, M.; Maeki, M.; Kita, S.; Tokeshi, M.; Maenaka, K.; Harashima, H.; Sato, Y. Examining the Impact of Storage Conditions on the Stability of a Liquid Formulation of MRNA-Loaded Lipid Nanoparticles. Pharmaceutics 2025, 17, 1194. [Google Scholar] [CrossRef] [PubMed]
- Li, M.; Jia, L.; Xie, Y.; Ma, W.; Yan, Z.; Liu, F.; Deng, J.; Zhu, A.; Siwei, X.; Su, W.; et al. Lyophilization Process Optimization and Molecular Dynamics Simulation of MRNA-LNPs for SARS-CoV-2 Vaccine. npj Vaccines 2023, 8, 153. [Google Scholar] [CrossRef] [PubMed]
- Ogawa, K.; Aikawa, O.; Tagami, T.; Ito, T.; Tahara, K.; Kawakami, S.; Ozeki, T. Stable and Inhalable Powder Formulation of MRNA-LNPs Using PH-Modified Spray-Freeze Drying. Int. J. Pharm. 2024, 665, 124632. [Google Scholar] [CrossRef] [PubMed]
- Reinhart, A.G.; Osterwald, A.; Ringler, P.; Leiser, Y.; Lauer, M.E.; Martin, R.E.; Ullmer, C.; Schumacher, F.; Korn, C.; Keller, M. Investigations into mRNA Lipid Nanoparticles Shelf-Life Stability Under Nonfrozen Conditions. Mol. Pharm. 2023, 20, 6492–6503. [Google Scholar] [CrossRef] [PubMed]
- Gulati, G.K.; Simpson, A.C.; MacMillen, Z.; Krieger, K.; Sharma, S.; Erasmus, J.H.; Reed, S.G.; Davie, J.W.; Avril, M.; Khandhar, A.P. Preclinical Development of Lyophilized Self-Replicating RNA Vaccines for COVID-19 and Malaria with Improved Long-Term Thermostability. J. Control. Release 2025, 377, 81–92. [Google Scholar] [CrossRef] [PubMed]
- Hermosilla, J.; Alonso-García, A.; Salmerón-García, A.; Cabeza-Barrera, J.; Medina-Castillo, A.L.; Pérez-Robles, R.; Navas, N. Analysing the In-Use Stability of MRNA-LNP COVID-19 Vaccines ComirnatyTM (Pfizer) and SpikevaxTM (Moderna): A Comparative Study of the Particulate. Vaccines 2023, 11, 1635. [Google Scholar] [CrossRef] [PubMed]
- Khan, M.F.H.; Wagner, C.E.; Kamen, A.A. Development of Long-Term Stability of Enveloped RVSV Viral Vector Expressing SARS-CoV-2 Antigen Using a DOE-Guided Approach. Vaccines 2024, 12, 1240. [Google Scholar] [CrossRef] [PubMed]
- Khan, M.F.H.; Youssef, M.; Nesdoly, S.; Kamen, A.A. Development of Robust Freeze-Drying Process for Long-Term Stability of RVSV-SARS-CoV-2 Vaccine. Viruses 2024, 16, 942. [Google Scholar] [CrossRef] [PubMed]
- Ausar, S.; Hasija, M.; Li, L. Rahman Forced Degradation Studies: An Essential Tool for the Formulation Development of Vaccines. Vaccine Dev. Ther. 2013, 11, 11–33. [Google Scholar] [CrossRef][Green Version]
- Fahrni, M.L.; Ismail, I.A.N.; Refi, D.M.; Almeman, A.; Yaakob, N.C.; Saman, K.M.; Mansor, N.F.; Noordin, N.; Babar, Z.U.D. Management of COVID-19 Vaccines Cold Chain Logistics: A Scoping Review. J. Pharm. Policy Pract. 2022, 15, 16. [Google Scholar] [CrossRef] [PubMed]
- Gote, V.; Bolla, P.K.; Kommineni, N.; Butreddy, A.; Nukala, P.K.; Palakurthi, S.S.; Khan, W. A Comprehensive Review of MRNA Vaccines. Int. J. Mol. Sci. 2023, 24, 2700. [Google Scholar] [CrossRef] [PubMed]
- Weng, Y.; Huang, Y. Advances of MRNA Vaccines for COVID-19: A New Prophylactic Revolution Begins. Asian J. Pharm. Sci. 2021, 16, 263. [Google Scholar] [CrossRef] [PubMed]
- Nance, K.D.; Meier, J.L. Modifications in an Emergency: The Role of N1-Methylpseudouridine in COVID-19 Vaccines. ACS Cent. Sci. 2021, 7, 748–756. [Google Scholar] [CrossRef] [PubMed]
- Szebeni, J.; Kiss, B.; Bozó, T.; Turjeman, K.; Levi-Kalisman, Y.; Barenholz, Y.; Kellermayer, M. New Insights into the Structure of Comirnaty COVID-19 Vaccine: A Theory on Soft Nanoparticles with mRNA-Lipid Supercoils Stabilized by Hydrogen Bonds. bioRxiv 2022. [Google Scholar] [CrossRef]
- Yu, H.; Dyett, B.P.; Drummond, C.J.; Zhai, J. Ionizable Lipid Nanoparticles for MRNA Delivery: Internal Self-Assembled Inverse Mesophase Structure and Endosomal Escape. Acc. Chem. Res. 2025, 58, 3210–3222. [Google Scholar] [CrossRef] [PubMed]
- Dehghani-Ghahnaviyeh, S.; Smith, M.; Xia, Y.; Dousis, A.; Grossfield, A.; Sur, S. Ionizable Amino Lipids Distribution and Effects on DSPC/Cholesterol Membranes: Implications for Lipid Nanoparticle Structure. J. Phys. Chem. B 2023, 127, 6928–6939. [Google Scholar] [CrossRef] [PubMed]
- Hald Albertsen, C.; Kulkarni, J.A.; Witzigmann, D.; Lind, M.; Petersson, K.; Simonsen, J.B. The Role of Lipid Components in Lipid Nanoparticles for Vaccines and Gene Therapy. Adv. Drug Deliv. Rev. 2022, 188, 114416. [Google Scholar] [CrossRef] [PubMed]
- Liu, T.; Tian, Y.; Zheng, A.; Cui, C. Design Strategies for and Stability of MRNA–Lipid Nanoparticle COVID-19 Vaccines. Polymers 2022, 14, 4195. [Google Scholar] [CrossRef] [PubMed]
- Klauer, A.A.; van Hoof, A. Degradation of MRNAs That Lack a Stop Codon: A Decade of Nonstop Progress. Wiley Interdiscip. Rev. RNA 2012, 3, 649. [Google Scholar] [CrossRef] [PubMed]
- Kornienko, I.V.; Aramova, O.Y.; Tishchenko, A.A.; Rudoy, D.V.; Chikindas, M.L. RNA Stability: A Review of the Role of Structural Features and Environmental Conditions. Molecules 2024, 29, 5978. [Google Scholar] [CrossRef] [PubMed]
- Khan, M.F.H.; Perumal, A.S.; Kamen, A.A. Investigation on a Freeze-Drying Process for Long-Term Stability of mRNA-LNPs. Vaccines 2026, 14, 242. [Google Scholar] [CrossRef] [PubMed]
- Ghosh, S.; Jacobson, A. RNA Decay Modulates Gene Expression and Controls Its Fidelity. Wiley Interdiscip. Rev. RNA 2010, 1, 351. [Google Scholar] [CrossRef] [PubMed]
- Fabre, A.L.; Colotte, M.; Luis, A.; Tuffet, S.; Bonnet, J. An Efficient Method for Long-Term Room Temperature Storage of RNA. Eur. J. Hum. Genet. 2013, 22, 379. [Google Scholar] [CrossRef] [PubMed]
- Larson, N.R.; Hu, G.; Wei, Y.; Tuesca, A.D.; Forrest, M.L.; Middaugh, C.R. PH-Dependent Phase Behavior and Stability of Cationic Lipid–MRNA Nanoparticles. J. Pharm. Sci. 2022, 111, 690–698. [Google Scholar] [CrossRef] [PubMed]
- Li, C.Y.; Liang, Z.; Hu, Y.; Zhang, H.; Setiasabda, K.D.; Li, J.; Ma, S.; Xia, X.; Kuang, Y. Cytidine-Containing Tails Robustly Enhance and Prolong Protein Production of Synthetic MRNA in Cell and In Vivo. Mol. Ther. Nucleic Acids 2022, 30, 300. [Google Scholar] [CrossRef] [PubMed]
- Cataldo, F. Ozone Degradation of Ribonucleic Acid (RNA). Polym. Degrad. Stab. 2005, 89, 274–281. [Google Scholar] [CrossRef]
- Coleman, H.J.; Schwartz, D.K.; Kaar, J.L.; Garcea, R.L.; Randolph, T.W. Stabilization of an Infectious Enveloped Virus by Spray-Drying and Lyophilization. J. Pharm. Sci. 2024, 113, 2072–2080. [Google Scholar] [CrossRef] [PubMed]
- Mahmud, A.K.M.F.; Rahman, K.M.Z.; Dey, S.K.; Islam, T.; Talukder, A.A. Genome Annotation and Comparative Genomics of ORF Virus. Adv. Microbiol. 2014, 4, 1117–1131. [Google Scholar] [CrossRef]
- Pogocki, D.; Schöneich, C. Chemical Stability of Nucleic Acid–Derived Drugs. J. Pharm. Sci. 2000, 89, 443–456. [Google Scholar] [CrossRef]
- Ahmed, F.; Alim, A.; Alam, F.; Islam, T.; Talukder, A.A. Bio-Geo-Chemical Characterization of Bangladeshi Textile Effluents. Adv. Microbiol. 2015, 5, 317–324. [Google Scholar] [CrossRef]
- Kanti Dey, S.; Islam, R.; Islam, T.; Islam, S.; Hasan, N. Molecular Epidemiology of Influenza in Asia. East. J. Med. 2015, 19, 119–125. [Google Scholar]
- Chheda, U.; Pradeepan, S.; Esposito, E.; Strezsak, S.; Fernandez-Delgado, O.; Kranz, J. Factors Affecting Stability of RNA–Temperature, Length, Concentration, PH, and Buffering Species. J. Pharm. Sci. 2024, 113, 377–385. [Google Scholar] [CrossRef] [PubMed]
- Helm, M. Post-Transcriptional Nucleotide Modification and Alternative Folding of RNA. Nucleic Acids Res. 2006, 34, 721–733. [Google Scholar] [CrossRef] [PubMed]
- Islam, T.; Diba, F.; Miah, R.; Siddiqa, A.; Azmuda, N.; Nahar, S.; Adnan, N.; Dey, S.K.; Talukder, A.A. Optimization of Acetic Acid Production Rate by Thermotolerant Acetobacter Spp. Adv. Microbiol. 2017, 7, 749–759. [Google Scholar] [CrossRef]
- Packer, M.; Gyawali, D.; Yerabolu, R.; Schariter, J.; White, P. A Novel Mechanism for the Loss of MRNA Activity in Lipid Nanoparticle Delivery Systems. Nat. Commun. 2021, 12, 6777. [Google Scholar] [CrossRef] [PubMed]
- Mishra, A.; Steinbach, S.; Tamer, I.M.; Budman, H. Effect of Oxidative Stress on Antigen Productivity in B. Pertussis Cultures. Biochem. Eng. J. 2024, 210, 109421. [Google Scholar] [CrossRef]
- Design of Online Estimator for Culture Monitoring and Media Development for Bordetella Pertussis. Available online: https://uwspace.uwaterloo.ca/items/dc0ee69b-d639-4d98-8be4-9fefafe3ddff (accessed on 7 July 2026).
- Ingle, R.G.; Fang, W.-J. An Overview of the Stability and Delivery Challenges of Commercial Nucleic Acid Therapeutics. Pharmaceutics 2023, 15, 1158. [Google Scholar] [CrossRef] [PubMed]
- Jiao, X.; He, X.; Qin, S.; Yin, X.; Song, T.; Duan, X.; Shi, H.; Jiang, S.; Zhang, Y.; Song, X. Insights into the Formulation of Lipid Nanoparticles for the Optimization of MRNA Therapeutics. Wiley Interdiscip. Rev. Nanomed. Nanobiotechnol. 2024, 16, e1992. [Google Scholar] [CrossRef]
- Strelkova Petersen, D.M.; Chaudhary, N.; Arral, M.L.; Weiss, R.M.; Whitehead, K.A. The Mixing Method Used to Formulate Lipid Nanoparticles Affects MRNA Delivery Efficacy and Organ Tropism. Eur. J. Pharm. Biopharm. 2023, 192, 126–135. [Google Scholar] [CrossRef] [PubMed]
- Barros, C.H.N.; Alfaro, M.; Csiki-Fejer, A.; Bhatnagar, B.; Tschessalov, S.; Ferguson, S.; Barua, S.; Darvari, R.; Topp, E.M. Comparative Analysis of MRNA Degradation Kinetics Using Chromatographic and Electrophoretic Methods. Mol. Pharm. 2025, 22, 3061–3072. [Google Scholar] [CrossRef] [PubMed]
- Hashiba, K.; Taguchi, M.; Sakamoto, S.; Otsu, A.; Maeda, Y.; Ebe, H.; Okazaki, A.; Harashima, H.; Sato, Y. Overcoming Thermostability Challenges in MRNA–Lipid Nanoparticle Systems with Piperidine-Based Ionizable Lipids. Commun. Biol. 2024, 7, 556. [Google Scholar] [CrossRef] [PubMed]
- Oude Blenke, E.; Örnskov, E.; Schöneich, C.; Nilsson, G.A.; Volkin, D.B.; Mastrobattista, E.; Almarsson, Ö.; Crommelin, D.J.A. The Storage and In-Use Stability of MRNA Vaccines and Therapeutics: Not A Cold Case. J. Pharm. Sci. 2023, 112, 386–403. [Google Scholar] [CrossRef] [PubMed]
- Nomani, A.; Saraswat, A.; Brown, H.; Kuo, J.C.-T.; Duong, H.T.T.; Wu, J.; Zhang, Y.; Fu, Y.; Moon, Y.; Wahidi, S.; et al. Identifying Key Factors Affecting MRNA-Lipid Nanoparticles Drug Product Formulation Stability. Nanomaterials 2026, 16, 268. [Google Scholar] [CrossRef] [PubMed]
- Wurtmann, E.J.; Wolin, S.L. RNA under Attack: Cellular Handling of RNA Damage. Crit. Rev. Biochem. Mol. Biol. 2009, 44, 34. [Google Scholar] [CrossRef] [PubMed]
- Du, C.Y.; Gao, H.; Jia, F.; Ding, Z.L.; Fang, W.J. Impact of Silicone Oil and Storage Conditions on the Physicochemical and Functional Stability of MRNA-LNPs: The Critical Role of MRNA Structure. Mol. Pharm. 2026, 23, 1667–1680. [Google Scholar] [CrossRef] [PubMed]
- Kamiya, M.; Matsumoto, M.; Yamashita, K.; Izumi, T.; Kawaguchi, M.; Mizukami, S.; Tsurumaru, M.; Mukai, H.; Kawakami, S. Stability Study of MRNA-Lipid Nanoparticles Exposed to Various Conditions Based on the Evaluation between Physicochemical Properties and Their Relation with Protein Expression Ability. Pharmaceutics 2022, 14, 2357. [Google Scholar] [CrossRef] [PubMed]
- Parveen, A.; Elkordy, A.A. Brief Insights into MRNA Vaccines: Their Successful Production and Nanoformulation for Effective Response against COVID-19 and Their Potential Success for Influenza A and B. Pathogens 2024, 13, 500. [Google Scholar] [CrossRef] [PubMed]
- Kafetzis, K.N.; Papalamprou, N.; McNulty, E.; Thong, K.X.; Sato, Y.; Mironov, A.; Purohit, A.; Welsby, P.J.; Harashima, H.; Yu-Wai-Man, C.; et al. The Effect of Cryoprotectants and Storage Conditions on the Transfection Efficiency, Stability, and Safety of Lipid-Based Nanoparticles for MRNA and DNA Delivery. Adv. Healthc. Mater. 2023, 12, e2203022. [Google Scholar] [CrossRef] [PubMed]
- Lou, J.; Wu, Z.; Cheng, Y.; Li, M.; Liu, N.; Wang, Z.; Gao, X.; Zheng, A.; Zhang, H. Recent Advances in Freeze-Drying Technologies for MRNA Vaccines against Infectious Diseases. Int. J. Pharm. 2026, 687, 126426. [Google Scholar] [CrossRef] [PubMed]
- Swetha, K.; Kotla, N.G.; Tunki, L.; Jayaraj, A.; Bhargava, S.K.; Hu, H.; Bonam, S.R.; Kurapati, R. Recent Advances in the Lipid Nanoparticle-Mediated Delivery of MRNA Vaccines. Vaccines 2023, 11, 658. [Google Scholar] [CrossRef] [PubMed]
- Birdsall, R.E.; Han, D.; DeLaney, K.; Kowalczyk, A.; Cojocaru, R.; Lauber, M.; Huray, J. Le Monitoring Stability Indicating Impurities and Aldehyde Content in Lipid Nanoparticle Raw Material and Formulated Drugs. J. Chromatogr. B 2024, 1234, 124005. [Google Scholar] [CrossRef] [PubMed]
- Trenkenschuh, E.; Friess, W. Freeze-Drying of Nanoparticles: How to Overcome Colloidal Instability by Formulation and Process Optimization. Eur. J. Pharm. Biopharm. 2021, 165, 345–360. [Google Scholar] [CrossRef] [PubMed]
- Shi, R.; Liu, X.; Wang, Y.; Pan, M.; Wang, S.; Shi, L.; Ni, B. Long-Term Stability and Immunogenicity of Lipid Nanoparticle COVID-19 MRNA Vaccine Is Affected by Particle Size. Hum. Vaccin. Immunother. 2024, 20, 2342592. [Google Scholar] [CrossRef] [PubMed]
- Wilson, B.; Geetha, K.M. Lipid Nanoparticles in the Development of MRNA Vaccines for COVID-19. J. Drug Deliv. Sci. Technol. 2022, 74, 103553. [Google Scholar] [CrossRef] [PubMed]
- Kim, B.; Hosn, R.R.; Remba, T.; Yun, D.; Li, N.; Abraham, W.; Melo, M.B.; Cortes, M.; Li, B.; Zhang, Y.; et al. Optimization of Storage Conditions for Lipid Nanoparticle-Formulated Self-Replicating RNA Vaccines. J. Control. Release 2023, 353, 241–253. [Google Scholar] [CrossRef] [PubMed]
- Shirane, D.; Tanaka, H.; Sakurai, Y.; Taneichi, S.; Nakai, Y.; Tange, K.; Ishii, I.; Akita, H. Development of an Alcohol Dilution–Lyophilization Method for the Preparation of MRNA-LNPs with Improved Storage Stability. Pharmaceutics 2023, 15, 1819. [Google Scholar] [CrossRef] [PubMed]
- Arte, K.S.; Chen, M.; Patil, C.D.; Huang, Y.; Qu, L.; Zhou, Q. Recent Advances in Drying and Development of Solid Formulations for Stable MRNA and SiRNA Lipid Nanoparticles. J. Pharm. Sci. 2025, 114, 805–815. [Google Scholar] [CrossRef] [PubMed]
- Cheng, X.; Zheng, X.; Tao, K.; Huo, H.; Liu, Z.; Lu, X.; Wang, J. Freezing Induced Incorporation of Betaine in Lipid Nanoparticles Enhances MRNA Delivery. Nat. Commun. 2025, 16, 4700. [Google Scholar] [CrossRef] [PubMed]
- Patel, P.; Ibrahim, N.M.; Cheng, K. The Importance of Apparent PKa in the Development of Nanoparticles Encapsulating SiRNA and MRNA. Trends Pharmacol. Sci. 2021, 42, 448–460. [Google Scholar] [CrossRef] [PubMed]
- WHITEPAPER-Purity is Paramount: Assessing N-Oxide Impurities in Lipids Used in Lipid Nanoparticle Delivery Systems-Drug Development and Delivery. Available online: https://drug-dev.com/whitepapers/whitepaper-purity-is-paramount-assessing-n-oxide-impurities-in-lipids-used-in-lipid-nanoparticle-delivery-systems/ (accessed on 16 February 2026).
- Ruppl, A.; Kiesewetter, D.; Köll-Weber, M.; Lemazurier, T.; Süss, R.; Allmendinger, A. Formulation Screening of Lyophilized MRNA-Lipid Nanoparticles. Int. J. Pharm. 2025, 671, 125272. [Google Scholar] [CrossRef] [PubMed]
- Lball, R.; Bajaj, P.; Whitehead, K.A. Achieving Long-Term Stability of Lipid Nanoparticles: Examining the Effect of PH, Temperature, and Lyophilization. Int. J. Nanomed. 2017, 12, 305–315. [Google Scholar] [CrossRef] [PubMed]
- Jung, J.; Kim, S.Y.; Kim, S.K. Single-Molecule Study of the Effects of Temperature, PH, and RNA Base on the Stepwise Enzyme Kinetics of 10–23 Deoxyribozyme. RSC Adv. 2022, 12, 14883. [Google Scholar] [CrossRef] [PubMed]
- Lewis, L.M.; Badkar, A.V.; Cirelli, D.; Combs, R.; Lerch, T.F. The Race to Develop the Pfizer-BioNTech COVID-19 Vaccine: From the Pharmaceutical Scientists’ Perspective. J. Pharm. Sci. 2023, 112, 640–647. [Google Scholar] [CrossRef] [PubMed]
- Speicher, D.J.; Rose, J.; McKernan, K. Quantification of Residual Plasmid DNA and SV40 Promoter-Enhancer Sequences in Pfizer/BioNTech and Moderna ModRNA COVID-19 Vaccines from Ontario, Canada. Autoimmunity 2025, 58, 2551517. [Google Scholar] [CrossRef] [PubMed]
- Haensler, J.; Even, L.; Wils, P.; Bensaid, F.; Dias, A.; Deng, H.; Karve, S.; DeRosa, F. Not so Cold! Improving the Thermostability of MRNA Vaccines. Expert Rev. Vaccines 2025, 24, 1149–1162. [Google Scholar] [CrossRef] [PubMed]
- Thess, A.; Grund, S.; Mui, B.L.; Hope, M.J.; Baumhof, P.; Fotin-Mleczek, M.; Schlake, T. Sequence-Engineered MRNA Without Chemical Nucleoside Modifications Enables an Effective Protein Therapy in Large Animals. Mol. Ther. 2015, 23, 1456–1464. [Google Scholar] [CrossRef] [PubMed]
- Holtkamp, S.; Kreiter, S.; Selmi, A.; Simon, P.; Koslowski, M.; Huber, C.; Türeci, Ö.; Sahin, U. Modification of Antigen-Encoding RNA Increases Stability, Translational Efficacy, and T-Cell Stimulatory Capacity of Dendritic Cells. Blood 2006, 108, 4009–4017. [Google Scholar] [CrossRef] [PubMed]
- Karikó, K.; Muramatsu, H.; Welsh, F.A.; Ludwig, J.; Kato, H.; Akira, S.; Weissman, D. Incorporation of Pseudouridine into MRNA Yields Superior Nonimmunogenic Vector with Increased Translational Capacity and Biological Stability. Mol. Ther. 2008, 16, 1833–1840. [Google Scholar] [CrossRef] [PubMed]
- Liu, X.H.; Song, H.P.; Tao, L.L.; Zhai, Z.; Huang, J.X.; Cheng, Y.X. Trehalose-Loaded LNPs Enhance MRNA Stability and Bridge in Vitro in Vivo Efficacy Gap. npj Vaccines 2025, 10, 201. [Google Scholar] [CrossRef] [PubMed]
- Voigt, E.A.; Gerhardt, A.; Hanson, D.; Jennewein, M.F.; Battisti, P.; Reed, S.; Singh, J.; Mohamath, R.; Bakken, J.; Beaver, S.; et al. A Self-Amplifying RNA Vaccine against COVID-19 with Long-Term Room-Temperature Stability. npj Vaccines 2022, 7, 136. [Google Scholar] [CrossRef] [PubMed]
- Parot, J.; Mehn, D.; Jankevics, H.; Markova, N.; Carboni, M.; Olaisen, C.; Hoel, A.D.; Sigfúsdóttir, M.S.; Meier, F.; Drexel, R.; et al. Quality Assessment of LNP-RNA Therapeutics with Orthogonal Analytical Techniques. J. Control. Release 2024, 367, 385–401. [Google Scholar] [CrossRef] [PubMed]
- BioPhorum. Defining the Required Critical Quality Attributes (CQAs) and Phase Requirements for MRNA/LNP Product Development and Manufacture Defining the Required Critical Quality Attributes (CQAs) and Phase Requirements for MRNA/LNP Product Development and Manufacture 2; BioPhorum: London, UK, 2023. [Google Scholar]
- Webb, A.L.J.; Welbourne, E.N.; Evans, C.A.; Dickman, M.J. Characterisation and Analysis of MRNA Critical Quality Attributes Using Liquid Chromatography Based Methods. J. Chromatogr. A 2025, 1745, 465724. [Google Scholar] [CrossRef] [PubMed]
- MRNA-LNP Nucleic Acid Assessment from Distinct Formulations by Multi-Capillary Gel Electrophoresis. Available online: https://sciex.com/tech-notes/biopharma/mrna-lnp-nucleic-acid-assessment-from-distinct-formulations-by-m (accessed on 4 July 2026).
- Guerrini, G.; Mehn, D.; Scaccabarozzi, D.; Gioria, S.; Calzolai, L. Analytical Ultracentrifugation to Assess the Quality of LNP-MRNA Therapeutics. Int. J. Mol. Sci. 2024, 25, 5718. [Google Scholar] [CrossRef] [PubMed]
- Carrasco, M.J.; Alishetty, S.; Alameh, M.G.; Said, H.; Wright, L.; Paige, M.; Soliman, O.; Weissman, D.; Cleveland, T.E.; Grishaev, A.; et al. Ionization and Structural Properties of MRNA Lipid Nanoparticles Influence Expression in Intramuscular and Intravascular Administration. Commun. Biol. 2021, 4, 956. [Google Scholar] [CrossRef] [PubMed]



| Factor | Underlying Mechanism | Impact on Product Quality | Mitigation Strategies |
|---|---|---|---|
| Temperature | Arrhenius-accelerated backbone hydrolysis; lipid oxidation; phase transitions | Loss of full-length mRNA; aggregation; potency loss | Frozen/cold chain; lyophilization; thermostable lipids |
| pH | Extreme pH catalyzes hydrolysis; shifts lipid ionization | Fragmentation; altered charge/aggregation | Buffer at pH 7.0–7.4; citrate vs phosphate choice |
| Light (UV/Vis) | ROS generation; photo-oxidation of bases/lipids | Strand breaks, cross-links, reduced potency | Amber/opaque vials; light protection |
| Oxidation | Lipid peroxidation → reactive aldehydes → mRNA adducts; metal-catalyzed ROS production | Adducted, non-translatable mRNA; membrane damage | Antioxidants; EDTA; inert headspace; lipid purity |
| Freeze–thaw | Ice formation; osmotic/mechanical stress | Fusion, leakage, >50% potency loss | Sucrose/trehalose 5–10%; controlled freezing |
| Moisture | Residual water enables hydrolysis of mRNA and ester lipids | Slow chemical degradation even when frozen | Lyophilization; sealed low-humidity packaging |
| Mechanical/shear | Liquid–air interface; PEG-lipid desorption; bilayer defects | Size increase, PDI rise, unencapsulated mRNA | Minimize agitation/vibration; surfactant stabilizers |
| Impurities | Peroxides, N-oxides, aldehydes, residual solvent | mRNA adduction; potency loss | >99% lipid purity; LC-MS impurity monitoring |
| Enzymes (RNase) | Exo-/endonucleolytic cleavage of exposed mRNA | Rapid loss of leaked mRNA | RNase-free process; encapsulation |
| Aggregation | Colloidal destabilization; fusion | Reduced delivery efficiency and efficacy | Steric (PEG) stabilization; ionic/pH control |
| Vaccine Type | Vaccine Example | Optimal Storage pH Range |
|---|---|---|
| mRNA Vaccines | Pfizer-BioNTech (Comirnaty) | 7.0–7.4 |
| Moderna (Spikevax) | 7.0–7.4 | |
| CureVac (CVnCoV) | 6.5–7.5 |
| Degradation Pathway | Stabilization Strategy | Supporting Evidence |
|---|---|---|
| Backbone hydrolysis | Water removal; buffer optimization; metal chelation | Lyophilization; Tris/sucrose, EDTA formulation [69,71] |
| Oxidation of mRNA adducts | Antioxidants; chelators; lipid purity control | EDTA; aldehyde control in ALC-0315 batches [57,71] |
| Lipid ester hydrolysis and peroxidation | Chemically robust ionizable lipids | Piperidine-based lipids vs. MC3 [47] |
| Freeze–thaw and physical instability | Cryoprotectant sugars; surfactant–sugar pairs | ~10% sucrose; sucrose–P188 [14,69,70] |
| Quality Attribute | Analytical Method(s) |
|---|---|
| mRNA integrity and purity | IP-RP-HPLC; CGE (BioPhase 8800; Fragment Analyzer) |
| mRNA–lipid adducts | IP-RP-HPLC coupled to LC-MS |
| Encapsulation efficiency and total RNA | RiboGreen fluorescence (± Triton X-100); LC-MS/MS; AUC |
| Particle size and PDI | DLS; MADLS; NTA |
| Morphology and internal phase | Cryo-TEM; SAXS; AF4-MALS |
| Lipid impurities and aldehydes | DNPH derivatization–LC-MS; LC-MS/MS |
| Apparent pKa | TNS fluorescence assay |
| Biological potency | In vitro reporter transfection (eGFP, Fluc); in vivo immunogenicity |
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Khan, M.F.H.; Islam, T.; Mishra, A.; Kamen, A.A. Possible Mechanisms of mRNA-LNP Degradation: A Comprehensive Review. Vaccines 2026, 14, 620. https://doi.org/10.3390/vaccines14070620
Khan MFH, Islam T, Mishra A, Kamen AA. Possible Mechanisms of mRNA-LNP Degradation: A Comprehensive Review. Vaccines. 2026; 14(7):620. https://doi.org/10.3390/vaccines14070620
Chicago/Turabian StyleKhan, MD Faizul Hussain, Tahsina Islam, Abhishek Mishra, and Amine A. Kamen. 2026. "Possible Mechanisms of mRNA-LNP Degradation: A Comprehensive Review" Vaccines 14, no. 7: 620. https://doi.org/10.3390/vaccines14070620
APA StyleKhan, M. F. H., Islam, T., Mishra, A., & Kamen, A. A. (2026). Possible Mechanisms of mRNA-LNP Degradation: A Comprehensive Review. Vaccines, 14(7), 620. https://doi.org/10.3390/vaccines14070620

