Identification of Traditional She Medicine Shi-Liang Tea Species and Closely Related Species Using the ITS2 Barcode
Abstract
:1. Introduction
2. Materials and Methods
2.1. Materials
2.2. DNA Extraction, Amplification and Sequencing
3. Results and Discussion
3.1. ITS2 Sequence Characteristics of Shi-Liang Tea Species and Closely Related Species
3.2. Clustering Analysis of Shi-Liang Tea Sources and Closely Related Species
3.3. Comparison of ITS2 Secondary Structures of Shi-Liang Tea Species and Closely Related Species
3.4. Two-Dimensional DNA Barcodes to Monitor Market Circulation and Promote the Modernization of Shi-Liang Tea Species and Closely Related Species
4. Discussion
4.1. Application of ITS2 Sequences in Identification of She Medicine
4.2. DNA Barcoding Identification of Herbal Tea
4.3. Application of the Secondary Structure of ITS2 Sequences in Traditional Chinese Medicine Identification
4.4. Application and Significance of Two-Dimensional DNA Barcodes
5. Conclusions
Supplementary Materials
Acknowledgments
Author Contributions
Conflicts of Interest
References
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Species Name | Amount of Samples | Sample No. or GenBank Accession Number | Sample Sources |
---|---|---|---|
Chimonanthus salicifolius | 1 | CH-3 | Liandu, Zhejiang |
6 | CH-4, CH-18 *, CH-23~24, CH-26, RC_CH-4 | Kaihua, Zhejiang | |
4 | CH-16, CH-17 *, CH-25, RC_CH-16 | Songyang, Zhejiang | |
1 | CH-22 | Chun’an, Zhejiang | |
2 | CH-5, RC_CH-5 | Wuyuan, Jiangxi | |
1 | CH-21 | Dexing, Jiangxi | |
2 | CH-6, RC_CH-6 | Xi’an, Shaanxi | |
1 | CH-19 | Xiuning, Anhui | |
5 | JQ781681-85 | GenBank | |
C. zhejiangensis | 2 | CH-7, CH-33 | Liandu, Zhejiang |
1 | CH-27 | Songyang, Zhejiang | |
1 | CH-28 | Qingtian, Zhejiang | |
1 | CH-29 | Yunhe, Zhejiang | |
1 | CH-30 | Jingning, Zhejiang | |
1 | CH-31 | Qingyuan, Zhejiang | |
1 | CH-32 | Longquan, Zhejiang | |
1 | CH-34 | Taishun, Zhejiang | |
1 | CH-9 | Shouning, Fujian | |
5 | JQ781668-72 | GenBank | |
C. praecox | 1 | CH-1 | Liandu, Zhejiang |
9 | JQ781691-95, AY786095-98 | GenBank | |
C. nitens | 1 | CH-11 | Yangshou, Guangxi |
5 | JQ781664-67, AY786094 | GenBank | |
C. campanulatus | 2 | CH-13, RC_CH-13 | Liandu, Zhejiang |
5 | JQ781686-90 | GenBank | |
Calycanthus chinensis | 3 | CH-15, CH-36, RC_CH-15 | Liandu, Zhejiang |
2 | KF547941, AY524084 | GenBank | |
Ca. floridus | 1 | CH-14 | Liandu, Zhejiang |
4 | AY524078, AY786084-86 | GenBank |
Latin Name | Sequence Length (bp) | Average GC Contents (%) |
---|---|---|
Chimonanthus salicifolius | 256–258 | 71.2 |
C. zhejiangensis | 256 | 71.1 |
C. praecox | 258 | 71.7 |
C. nitens | 256 | 71.0 |
C. campanulatus | 256–257 | 72.7 |
Calycanthus chinensis | 257–260 | 71.5 |
Ca. floridus | 258–259 | 72.0 |
Species | 1 | 2 | 3 | 4 | 5 | 6 | 7 |
---|---|---|---|---|---|---|---|
1 | 0.000–0.008 | 0.004–0.008 | 0.036 | 0.008–0.016 | 0.040 | 0.073–0.078 | 0.061–0.066 |
2 | 0.000–0.004 | 0.032–0.036 | 0.004–0.016 | 0.036–0.040 | 0.070–0.078 | 0.057–0.066 | |
3 | 0.000 | 0.028–0.036 | 0.016 | 0.069–0.074 | 0.052–0.057 | ||
4 | 0.000–0.012 | 0.032–0.040 | 0.074–0.088 | 0.061–0.075 | |||
5 | 0.000 | 0.074–0.078 | 0.057–0.061 | ||||
6 | 0.000–0.004 | 0.032–0.040 | |||||
7 | 0.000–0.004 |
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Ma, S.; Lv, Q.; Zhou, H.; Fang, J.; Cheng, W.; Jiang, C.; Cheng, K.; Yao, H. Identification of Traditional She Medicine Shi-Liang Tea Species and Closely Related Species Using the ITS2 Barcode. Appl. Sci. 2017, 7, 195. https://doi.org/10.3390/app7030195
Ma S, Lv Q, Zhou H, Fang J, Cheng W, Jiang C, Cheng K, Yao H. Identification of Traditional She Medicine Shi-Liang Tea Species and Closely Related Species Using the ITS2 Barcode. Applied Sciences. 2017; 7(3):195. https://doi.org/10.3390/app7030195
Chicago/Turabian StyleMa, Shuangjiao, Qundan Lv, Hong Zhou, Jie Fang, Wenliang Cheng, Chengxi Jiang, Kejun Cheng, and Hui Yao. 2017. "Identification of Traditional She Medicine Shi-Liang Tea Species and Closely Related Species Using the ITS2 Barcode" Applied Sciences 7, no. 3: 195. https://doi.org/10.3390/app7030195
APA StyleMa, S., Lv, Q., Zhou, H., Fang, J., Cheng, W., Jiang, C., Cheng, K., & Yao, H. (2017). Identification of Traditional She Medicine Shi-Liang Tea Species and Closely Related Species Using the ITS2 Barcode. Applied Sciences, 7(3), 195. https://doi.org/10.3390/app7030195