1. Introduction
The separation of particles is an important process in the medical laboratories and biomedical industries. Some traditional separation technologies have been developed for centuries, such as filtration, centrifugation, chromatography, and electrophoresis [
1]. In recent decades, with the rapid development of micro-electromechanical systems (MEMS), several continuous flow separation methods have been proposed in microfluidic devices. Huang [
2] proposed a size-based continuous separation technique, termed as “deterministic lateral displacement” (referred to as DLD). A schematic diagram of the DLD device is shown in
Figure 1. The DLD device is mainly composed of an ordered array of obstacles such as cylindrical posts. The array has a fixed lateral shift between the neighboring columns. Small particles are able to largely follow the undisturbed streamlines through the array along a zigzag path (referred to as zigzag mode), whereas large particles travel across the flow lane or the “separation” streamlines which go through the stagnation points of the flow past the posts due to the interaction with the posts, being laterally displaced (referred to as lateral-displacement mode), as shown in
Figure 1.
The DLD separation technique is attractive due to its advantages of easy implementation, fast sorting speed, and high size-resolution, and has been widely used to separate bioparticles [
3,
4,
5], such as separation of the blood cell components [
6,
7] and separation of living parasites [
8] and circulating tumor cells [
9] from blood.
The critical particle diameter for the separation or two motion modes is a key fundamental issue for the DLD separation technique, and has been investigated theoretically, numerically, and experimentally. Inglis [
10] proposed a theoretical model for the critical diameter of rigid particles, which was assumed to be equal to twice the width of the first flow lane above the post surface, as shown in
Figure 1. Although the theory generally underestimates the critical diameters [
10], it has been widely used as a convenient tool to predict the critical separation size by using the single-phase flow field without solving the particle–fluid interactions [
11,
12,
13]. The effects of the post shape, the fluid property, and the particle property on the DLD separation performance have been receiving much attention. Regarding the post shape, the triangular post [
11,
12], the diamond and airfoil post [
14], the I-shaped post [
15], and the airfoil post with various angle-of-attacks [
13] have been investigated. Regarding the fluid property, D’Avino [
16] investigated the effects of the shear-thinning property of the non-Newtonian fluids on the particle critical diameter with a distributed-Lagrange-multiplier-based fictitious domain method and observed that fluid shear-thinning contributed to decrease the critical particle diameter compared to the Newtonian case by altering the flow field between the posts. Li [
17] further demonstrated experimentally that the critical diameter was affected by not only shear-thinning but also elastic effects of the viscoelastic medium. The fluid inertial effects on the separation performance were studied by Lubbersen [
18] and Dincau [
19]. Regarding the particle property, Beech [
20] experimentally examined the effects of the deformation of erythrocytes in the DLD device, and found that the motion mode could be changed from the lateral displacement to the zigzag, as the particle deformability was increased. The effects of the particle flexibility on the separation has also been investigated by two-dimensional direct numerical simulations [
21,
22,
23,
24,
25] and three-dimensional simulations [
26,
27]. The reader is referred to McGrath [
3], Salafi [
4], and Hochstetter [
5] for a nice review of the progress in the DLD field.
Despite wide applications of the DLD technique, there are still various fundamental issues that have not been well resolved [
5]. A full understanding of particle mode behavior remains elusive, even for simple rigid spherical particles with cylindrical posts, as pointed out by Hochstetter [
5]. There exists some discrepancy in the critical particle size between different experiments for rigid spherical particles with cylindrical posts [
5]. The theory underestimates the critical size measured in the experiments, as mentioned earlier, and the reason should be related to the short-range interaction between the particle and the post. Although the particle motion in DLD has been investigated with various numerical methods, such as the immersed boundary lattice Boltzmann method [
24,
26,
28], immersed boundary (or similarly fictitious domain) finite difference method [
21,
22], dissipative particle dynamics [
23,
27], and boundary integral method [
25], the effect of the lubrication force has not been examined, to the best of our knowledge. In addition, most previous numerical simulations are two-dimensional, with very limited three-dimensional simulations [
26,
27]. In the present study, we intend to develop a novel and efficient three-dimensional fictitious domain method specified for the DLD problem and then examine the effect of the lubrication force saturation on the motion mode of a non-colloidal spherical particle in the cylindrical post array. Our results show that the lubrication force saturation is important to the particle critical separation size, and a larger saturation distance generally makes the particle more prone to the lateral displacement mode. The rest of the paper is organized as follows. In
Section 2, we present the numerical method, and the mesh convergence test for the single-phase flow in DLD is performed. In
Section 3, we report and discuss the results on the effect of the lubrication force saturation. Finally, we summarize the main contributions of the present study in
Section 4.
2. Numerical Model
2.1. Flow Model
We have developed the direct-forcing fictitious domain (DF/FD) method [
29] for the direct numerical simulation of particle-laden flows, based on the modification of the original distributed-Lagrange-multiplier-based FD method of Glowinski [
30]. The key idea of the FD method is to fill the interior domain of particles with fictitious fluids, and distribute a pseudo-body force (i.e., distributed Lagrange multiplier) over the solid region to enforce the rigid-body constraints [
30]. Our FD method has been applied to the motion mode of a flexible particle in a two-dimensional DLD device [
22] and a wide range of particle-laden flows (e.g., [
31,
32,
33,
34]). However, it is not possible to apply our FD code to a three-dimensional DLD geometry with a great many number of posts and inlet–outlet boundaries due to huge computational costs. Thus, following Krüger [
26] and Henry [
27], we adopt a DLD cell with the periodic boundary condition in the lateral (
y) direction and a shifted periodic boundary condition in the streamwise (
x) direction, as shown in
Figure 2. The no-slip wall boundary condition is imposed in the spanwise (
z) direction, since we plan to examine the spanwise spatial constraint effect on the motion of the bioparticle in the DLD device [
35] in the future. A pressure gradient is imposed in the streamwise direction to maintain a constant fluid mean velocity
. The size of the computational domain (i.e., DLD cell) is
. The cylinder with the diameter of
D is located at the center of the
cell. In the present study, we set
, and
, so that the gap distance between vertical neighboring posts (i.e.,
in
Figure 1) is
. For a row shift of
, the shifted periodic boundary condition implies that
The row shift fraction is defined as , and the periodicity of the DLD system is when is an integer.
Two significant modifications of our previous FD method are required. One is on the fast solver for the pressure Poison equation specified for the shifted periodic boundary condition, and the other is that our previous half-staggered finite-difference scheme was found unstable for this problem, and so the conventional staggered finite-difference scheme is then adopted. In the following, we describe our modified FD method for the motion of one particle in the DLD cell.
2.2. Fictitious Domain Method
Suppose that the particle density, volume, moment of inertia, translational velocity, and angular velocity are
,
,
,
, and
, respectively. The viscosity and density of the fluid are
and
, respectively. Let
represent the solid domain and
the entire computational domain containing both solid and fluid regions. We introduce the following characteristic scales for the non-dimensionalization: the cylinder diameter
D for length, the fluid mean velocity
for velocity,
for time,
for pressure, and
for the pseudo-body force. Then, the dimensionless FD formulation for the incompressible fluid can be written as
where
,
p,
,
represent the fluid velocity, pressure, pseudo-body force, and position vector with respect to the mass center of the particle, respectively.
is the particle to fluid density ratio,
the Reynolds number defined by
,
the Froude number defined by
, with
being the gravitational acceleration,
the dimensionless particle volume define by
, and
the dimensionless moment of inertia defined by
.
A fractional-step temporal scheme is used to decouple the system (
2)–(
6) into the following two sub-problems:
Fluid sub-problem for
and
p:
We will introduce the solution of the fluid sub-problem later.
Particle sub-problem for
,
,
and
:
Then, the pseudo-body forces
defined at the Lagrangian nodes are updated from
Finally, the fluid velocities
at the Eulerian nodes are corrected as follows:
In the above manipulations, a discrete -function in the form of a tri-linear function is used to transfer quantities between the Eulerian and Lagrangian nodes.
The no-slip boundary condition on the cylinder is enforced by introducing another pseudo-body force distributed on the cylinder surface.
2.3. Solution of Fluid Sub-Problem
The following projection scheme is used to further decouple (
7) and (
8) as follows:
Velocity Helmholtz equation
where
.
Velocity and pressure correction
The velocity Helmholtz Equation (
13) is solved with the Douglas Gunn alternating-direction-implicit (ADI) scheme [
36]:
In the above equations, , , and represent the second-order derivative in the x, y, and z directions, respectively. In the absence of , the Douglas Gunn scheme above is second-order accurate and unconditionally stable.
A homogeneous grid is used. For our previous FD method, a half-staggered grid was employed, which means that the velocity components are collocated but the pressure nodes are staggered with the velocity nodes. Somehow this scheme was found unstable for the present problem, and thus we adopt the fully staggered grid. The velocity derivatives in the convection and diffusion terms are discretized with a second-order central difference scheme.
The most time-consuming step for the incompressible flow is the solution of the pressure Poison Equation (
14). Here, we develop a combined FFT and tri-diagonal-system fast solver for the present problem. The pressure is defined at the cell center and the discretized pressure equation at the pressure node
can be written as follows:
for
. Here
M,
N, and
L represent the cell numbers of the computational domain in the
x,
y, and
z directions, respectively. Since the pressure is periodic in the
y direction and its normal gradient on the side wall is zero, we perform an FFT in the
y direction and a fast cosine transformation in the spanwise (
z) direction, and the pressure in the physical space
can be expanded with its spectrum
:
where
denotes the imaginary number
.
Expanding all terms in (
20) with (
21), one can obtain the following equation for the pressure spectrum:
which is a tri-diagonal system and holds for
.
For the shifted periodic boundary condition, the equation for
and
needs to be treated specifically. We assume that the row shift satisfies
where
h denotes the mesh size. The pressure equation in the physical space for
(i.e., the first cell center node from the left) is
Then, the pressure equation in the spectral space for
is
Similarly, one can derive the pressure equation in the spectral space for
:
Equations (
22), (
25), and (
26) comprise a cyclic tri-diagonal system, which can be efficiently solved with the code from [
37]. We also employ the codes from [
37] for the fast cosine and Fourier transformations.
2.4. Lubrication Force Correction
Since the fictitious domain method is based on a fixed Cartesian grid, the short-range lubrication force cannot be resolved when the gap distance between the particle and the cylinder is smaller than one mesh. Thus, the lubrication force correction is needed. We denote the particle radius and the cylinder radius as a and R, respectively, and define the size ratio as , the gap distance between the particle and cylinder surfaces as , and the normalized gap distance .
The lubrication force correction has the following form:
where
is the particle normal relative velocity with respect to the cylinder.
is the critical gap below which the lubrication correction is activated, and in the present study we set
, where
h is the mesh size.
is a function of the normalized gap distance
. Since we cannot find the formulation of the lubrication force between a particle and a cylinder, we adopt the formulation for two spherical particles [
38]:
Note that the lubrication correction is kept constant for to account for the lubrication force saturation due to the effect of the surface roughness. The lubrication force is solved implicitly. It should be noted that the lubrication force for two spherical particles is weaker than that for the particle–cylinder at the same gap distance, thus we consider our computation of the particle motion reasonably accurate, not highly accurate.
2.5. Mesh Convergence Test
The modification of our previous FD code on the solution of the fluid field is substantial, but there are no data on DLD in literature available for rigorously validating our code. Hence, we perform a mesh convergence test for the solution of the flow in the absence of the particle, which also helps to choose a suitable mesh resolution. The computational domain size is
, as mentioned earlier. The profiles of the streamwise velocity normalized with its maximum between vertical neighboring posts for the mesh numbers of
,
,
, and
are compared in
Figure 3. One can see that the solution with the mesh
is in excellent agreement with the one with
.
The mesh
is chosen for the simulation of the particle motion in DLD. The smallest particle diameter we consider is
, which covers more than 15 meshes. Our previous works showed that this mesh resolution is sufficient for the prediction of the particle motion with reasonable accuracy for various situations [
22,
29,
31,
32,
33,
34]. Throughout this study, the Reynolds number based on the cylinder diameter and the fluid mean velocity is
, as an approximation to the creep flow. Our test showed that further decrease in
does not change the result. The time step is
, which was found to be small enough for the time-step-independent particle trajectory. The particle is assumed to be non-colloidal, and thus the Brownian motion does not need to be considered. The density ratio is unity.
3. Results and Discussion
In the present study, we only consider the DLD geometries with the periodicity N = 8, 16, and 32 (i.e., the row shift fraction 0.125, 0.0625, and 0.03125), and the saturation distance of the lubrication force ranging from 0.002R to 0.01R; here R being the cylinder radius.
The particle trajectories for different particle sizes at
and
till
in the DLD with the periodicity of
N = 8 are plotted in
Figure 4. We define the motion mode as “lateral-displacement” (referred to as LD) only if the particle keeps moving upwards along the same tilted channel, and otherwise as “zigzag mode”.
Figure 4 shows that at
the motion mode undergoes a transition from zigzag for the particle of
to LD for the particle of
. By contrast, the transition from zigzag to LD takes place from
to
for
, as shown in
Figure 4b. The particle of
moves with the LD mode for
, but moves with the zigzag mode for
.
Figure 5 shows the particle trajectories for
,
,
, and
at different
till
in the DLD with the periodicity of
N = 16. We see that the particle of
experiences a mode transition from zigzag at
to LD at
in
Figure 5b, and the particles of
and
experience such transition from
to
in
Figure 5c,d. Therefore, the effect of the lubrication force saturation on the motion mode is significant. The lubrication force serves as a repulsive force when the particle approaches the cylinder and as an attractive force when the particle moves away from the cylinder. From our results, the lubrication force tends to make the particle more prone to the zigzag mode, consistent with the observation that the experimental critical particle diameter is larger than the theoretical prediction (i.e., twice the first flow lane width) [
5,
10]. As the saturation distance
increases, the effect of the lubrication force decreases, resulting in the transition from zigzag to LD, as observed above.
We search for the critical particle diameter of two motion modes with the smallest variation of the particle diameter being
. For example, for
and
N = 8 (i.e.,
0.125), the mode transition takes place from
to
, as shown in
Figure 4a, and then we take the critical diameter as
for this case. From our simulations,
, 0.35, and 0.27 for
N = 8, 16, and 32 at
, respectively, and
, 0.43, and 0.27 for
N = 8, 16, and 32 at
, respectively. The critical diameter is commonly normalized with the gap distance between vertical neighboring posts
(see
Figure 1). Here,
, since
. Our results on the critical diameter are compared to the experiments of Inglis [
10] in
Figure 6, and good agreement between the two results can be observed.
may be regarded as the surface roughness in the experiments, and the surface roughness of
may be reasonable for micro-posts in lab.
From
Figure 6, the critical diameter is higher at a lower
for
N = 8 and 16, as observed in
Figure 4 and
Figure 5; however, they are the same at
and
for
N = 32. Through inspecting our simulation data for the particle of
(i.e., the smallest particle moving with the LD mode for both
) at
and
N = 32, the smallest gap distance between the particle and the cylinder is around
, which is beyond the critical distance (
) to activate the lubrication force saturation. Thus, the particle motion is not affected by setting of
and
.
For a larger row shift fraction
(i.e., smaller periodicity
N), the particle critical diameter is larger, and the short-range hydrodynamic interaction between the particle and the cylinder is stronger; thus, generally, we expect a stronger effect of the lubrication force saturation on the particle motion mode, as evidenced by scattered experimental data on the critical diameter at large row shift fractions [
5,
10]. The effect of the lubrication force saturation due to the surface roughness may be an important reason for the discrepancy between the critical diameters of different groups, as shown in Hochstetter [
5].