Abstract
Fatty liver disease is considered a critical illness that should be diagnosed and detected at an early stage. In advanced stages, liver cancer or cirrhosis arise, and to identify this disease, radiologists commonly use ultrasound images. However, because of their low quality, radiologists found it challenging to recognize this disease using ultrasonic images. To avoid this problem, a Computer-Aided Diagnosis technique is developed in the current study, using Machine Learning Algorithms and a voting-based classifier to categorize liver tissues as being fatty or normal, based on extracting ultrasound image features and a voting-based classifier. Four main contributions are provided by our developed method: firstly, the classification of liver images is achieved as normal or fatty without a segmentation phase. Secondly, compared to our proposed work, the dataset in previous works was insufficient. A combination of 26 features is the third contribution. Based on the proposed methods, the extracted features are Gray-Level Co-Occurrence Matrix (GLCM) and First-Order Statistics (FOS). The fourth contribution is the voting classifier used to determine the liver tissue type. Several trials have been performed by examining the voting-based classifier and J48 algorithm on a dataset. The obtained TP, TN, FP, and FN were 94.28%, 97.14%, 5.71%, and 2.85%, respectively. The achieved precision, sensitivity, specificity, and F1-score were 94.28%, 97.05%, 94.44%, and 95.64%, respectively. The achieved classification accuracy using a voting-based classifier was 95.71% and in the case of using the J48 algorithm was 93.12%. The proposed work achieved a high performance compared with the research works.
1. Introduction
Diffuse liver conditions, including fatty liver, are the world’s leading cause of death [1], and Fatty Liver Disease (FLD) has a prevalence of 25 percent worldwide. Nonalcoholic Liver Fatty Disease (NALFD) and its subtype, nonalcoholic steatohepatitis, affect 30 percent and 5 percent of people in the USA, respectively [2]. Asia and Africa were found to have the most observed prevalence of FLD [3]. There are several categories of hepatic disorders; those caused by poisons, too much alcohol, or drugs. Other kinds of diseases are caused by viruses, such as hepatitis B and C.
Liver diseases can be caused by many other factors, including high blood sugar, insulin resistance, and obesity. Fatty liver can be treated if it is possibly identified at an early stage, a changeable condition, which is categorized by the accumulation of liver fat, and this deposition can be due to nonalcoholic origin or excessive consumption of alcohol. FLD is associated with several features such as insulin resistance, diabetes, hyperlipidemia, and viral hepatitis [4].
2. Background
FLD may progress to advanced liver diseases, such as hepatic transaminases, cryptogenic hepatocellular disease, and cirrhosis, which may eventually result in death [5,6]. Table 1 shows the ultrasound (US) findings and specific causes of liver disease. Despite the accurate results of liver biopsy for FLD detection and diagnosis; however, it has certain associated weaknesses. Those weaknesses consist of bleeding until death, penetration of the skin, and some complications, e.g., increased abdominal pain, chills, dizziness, difficulty of breathing, abdominal pains, and chest, fever, and redness or severe pain at the position of the biopsy [7,8,9,10]. Different noninvasive methods are used to reduce unnecessary liver biopsy cases and to observe FLD, mainly imaging techniques, such as ultrasound imaging analysis.
Table 1.
Main types of diffused liver diseases and ultrasound findings.
Ultrasound is preferred by radiologists because it is nonexpensive, noninvasive, easy to operate, and radiation-free. In addition, it provides higher average specificity and sensitivity for detecting fatty liver when compared to other kinds of noninvasive imaging techniques such as (1) Magnetic Resonance (MR) imaging and (2) Computed Tomography (CT). CT is limited by the standardization required for the different scanners and the inter-observer variability. In radiomics [11,12], the standardization of feature extraction methodology is significant for second and higher-order texture features. Furthermore, MR techniques can be technically challenging. A functional MR of the liver diagnosis requires stability adequate for the elimination of patient motion [13,14,15,16]; a brief description of these diagnosis approaches is shown in Table 2.
Table 2.
Invasive and noninvasive test methodology for evaluation of FLD overview.
One of the major limitations of using ultrasound is the low quality of the acquired images compared to those of MRI and CT. This means that the classification task is extremely difficult and is one of the challenges addressed in this research.
One method to reduce the limitations of an ultrasound is to improve a Computer-Aided Diagnosis (CAD) system. CAD offers a promising solution to reduce variation in colonoscopy performance [17]. Many of the CAD systems have been developed using medical liver images for the diagnosis of liver diseases [18,19]. The usage of a CAD method reduces the user’s intervention and helps experts and physicians to detect FLD through analyzing ultrasound images.
The CAD introduced by Yeh et al. [20], developed a procedure to make nonsteatosis (healthy liver) distinguished. Nonsteatosis and steatosis (fatty) specials of the liver are imaged by ultrasonography of high frequency. The authors retrieved and used two characteristics, Support Vector Machine (SVM), as a classifier to obtain an accuracy of up to 90%. A CAD system was developed by Ribeiro et al. [21] for classifying steatosis and nonsteatosis using Radio Frequency (RF), the signal made by the ultrasound examination was employed to extract only two images. The first one is a speckle-only image, and the second is a despeckled image with descriptions and anatomical characteristics. The intensity features were calculated from the despeckled image and the speckle image, associated with two texture features extracted. The classification process was performed on two categories, ten steatosis liver images and ten nonsteatosis ultrasonic liver images; the Bayes classifier was used in this study and obtained an accuracy of 95%.
Mittal et al. implement the CAD system in [22], which specialists combined to analyze and diagnose liver focal lesions from 2D-mode ultrasound images. The authors used four different types of focal liver lesions and associated them with the normal human liver. In the ultrasound image, the noise was decreased by filtration, and then they divided the ROIs into 800 segmented sections. Afterward, based on the texture, near 208 texture-based features were extracted from separate ROI. The achieved accuracy of the use of the ANN approach was about 86%. Acharya et al. [23] suggested a classification manner to discriminate steatosis and a normal human liver. In this study, the authors extracted a combination of image texture features from the diffused liver. Applying this classification technique, the authors obtained an accuracy of about 93%.
Ribeiro et al. proposed a CAD system in [24] for FLD analysis and classification. In total, 36 features were extracted from each selected ROI from the ultrasound image. Then, based on three different classifiers: k-Nearest Neighbor (k-NN), Bayes, and Support Vector Machine (SVM), the obtained accuracy was recorded at 85.71%. Li et al. [25], utilizing an SVM classifier based on liver ultrasound images. The extracted features were from GLCM, Near-Far-Field Greyscale Ratio (NFFGR), and Neighborhood Grey-Tone Difference Matrix (NGTDM). As a consequence of using a previous technique, the total accuracy recorded was 90.55%. Singh et al. [19] proposed a technique based on the fusion information for the hepatic classification by operating an ultrasonic image texture examination. Based on texture examination, a set of texture features are applied in the classification technique. A combination of the best-selected features associated with their weights is suggested. The total accuracy of this technique was 95%.
The common phases of the CAD system based on feature extraction and classification stage were [6]: (1) feature extraction phase, numerous texture features were selected and extracted using the desired and significant features from the ultrasound images of the human liver tissues such as entropy [6], (GLCM) [18,19,26,27,28,29], Grey Level Run Length Matrix (GLRLM) [18], FOS [18,19,30], Grey Level Difference Statistics (GLDS) [19,31], Fourier Analysis (FA) [19,27,28], and Statistical Feature Matrix (SEM) [19,27]; (2) Classification stage: many classifiers are proposed in the classification phase, for example, k-NN [27,32], Naive Bayes (NB) [28], Decision Tree (DT) [29,30], AdaBoost [31], Random Forest (RF) [33,34], Fuzzy [35,36] (SVM) [32,37,38,39], Multilayered Perceptron (MLP) [29,40], Probabilistic Neural Network (PNN) [41], Quadratic Discriminant Analysis (QDA), and Linear Discriminant Analysis (LDA) [6]. The most important purpose of this study is to achieve high recognition accuracy to discriminate between fatty/normal liver.
Unlike the classical machine learning techniques that are used in this study, deep learning was proposed in [42]. Deep learning [43,44] was not feasible to apply in our research work due to the limitation of the dataset.
In our proposed work, there are four main contributions. Firstly, the ultrasound liver images were classified as fatty or normal without the segmentation stage. Secondly, the available dataset in previous works was insufficient compared to our proposed work. Thirdly, decreasing the total number of extracted features to only 26 features turned out to have low computational complexity. Fourthly, the achieved recognition accuracy of the voting-based classifier was better than other classifiers.
The current paper is organized as follows. First, the technique of image acquisition used is described briefly in Section 2, and then Section 3 sets out the proposed work. After that, the experimental results and discussion are described in Section 4. As a final point, the conclusion is set out in Section 5.
3. Materials and Methods
3.1. Image Acquisition
In the current paper, GE Logiq p5 [45] equipment was used for image acquisition. Elroowad Radiography Center, Menouf City, Egypt supplied us with images to be used in this study, by three professional medical radiologists. The transmitting frequency of the ultrasound was (2 to 3) MHz with a convex probe. The resolution of the acquired color image was 684 × 552 pixels. There were 300 images; one image was acquired from each patient. An experienced radiologist determined the ROI. Corresponding to the decisions of the three experienced radiologists, 155 US images were manually considered as normal liver, and 145 images as fatty liver. This research work focuses on normal/fatty liver images. Figure 1 shows one of the normal and fatty images.
Figure 1.
An acquired image from an ultrasound scan machine (a) normal liver and (b) fatty liver.
3.2. Methodology
The main objectives of the present CAD system were 1- To analyze the consequence of a dynamic size of ROI extracted from each ultrasound liver image; 2-To categorize the USA liver images as fatty or normal without the segmentation stage, a voting-based classifier was applied. In this research work, multiple ROIs (nine ROIs) were selected within the liver tissue. This was also automatically determined by the Genetic Algorithm (GA). GA is an adaptive investigative search algorithm [41]. In GA, firstly, an initial population was created. The population consisted of 100 chromosomes. Separately, a chromosome was composed of concatenated thresholds or candidate solutions. The chromosome construction is shown in Figure 2. Secondly, each pair of parent chromosomes was carefully chosen, and then the crossover process was performed at the random crossover point. Thirdly, the mutation operation was executed on every chromosome at a random point. Then, the offspring was generated. Finally, an optimization using an objective function was performed for offspring and the parent chromosomes.
Figure 2.
The chromosome structure, note: F1→Feature1, etc.
The objective function was used to exploit the accurately classified US images or to minimize the number of wrongly classified images. The fitness function was reciprocal of the Penalty Value (PV), or precisely the number of incorrectly categorized images. Ultimately, the fitness function was the number of correct categorized images.
The position was initially determined by three experienced physicians. As a consequence of labeling ROIs, the fixed positions were then used for newly acquired images. To make the process faster, only ROIs in the selected images were converted from RGB to a grey level [46], according to the following equation:
where I is a transformed image; then, the 26 features of each ROI were extracted, as in Figure 3. Finally, the voting-based classifier was used to categorize the kind of liver tissue normal/fatty [46]. In a Voting-based classifier, the key concept was to perform multi-independent Extreme Learning Machine (ELM) training in place of one single ELM training, and then a final decision was taken depending on the majority voting method [47].
Figure 3.
General block diagram of the work proposed.
3.2.1. Feature Extraction
Twenty-six texture features were then extracted from the ultrasonic images of each selected ROI of human liver tissues such as: (A)-FOS which include: (1) Mean, (2) Skewness, (3) Variance, and (4) Kurtosis; (B)-GLCM including (1) Standard deviations, (3) Contrast, (4) Mean, (5) Autocorrelation, (6) Dissimilarity energy, (7) Correlation, (8) Cluster shade, (9) Cluster Prominence, (10) Information measure of correlation, (11) Sum average, (12) Difference variance, (13) Entropy, (14) Sum variance, (15) Sum-of-squares, (16) Sum entropy, (17) maximum probability, (18) Inverse Difference Normalized, (19) Difference entropy, (20) Homogeneity, and (21) Inverse difference moment normalized. These texture features were extracted as in [16].
3.2.2. Classification
For all selected “ROIs,” there were 26 decisions made. This process was repeated for all other ROIs. The number of decisions made for the normal tissue were counted accordingly. Then, this count was compared to a specific threshold, i.e., the voting threshold, as a consequence of the number of ROIs categorized as fatty liver to the number of ROIs categorized as normal liver, a voting-based classifier was used to identify the class of the liver type. The final vote was “normal liver” if the count was greater than the threshold for voting. Otherwise “fatty liver” as the final decision, as shown below in Algorithm 1. Furthermore, to diagnose diffuse liver disease in an accurate manner, dynamic-sized ROIs (row × column) were proposed. In this study, to prevent manually selected threshold parameters; the GA was used.
| Algorithm 1: Optimization of the number of ROIs, ROI size selection, and voting threshold. |
| 1. For iteration number = 1, 2, 3,……, number of iteration do |
| 2. For every chromosome do |
| Number of incorrectly classified images = 0 |
| For every training image do |
| voting = 0 |
| For every ROI of size, m x n do |
| Convert ROI into gray level using the equation: |
| Compute all 26 features |
| End for |
| If voting > voting_threshold |
| If training image = abnormal |
| Number of incorrectly classified image +1→ |
| Number of incorrectly classified image |
| End if |
| Else |
| If training image = normal |
| Number of incorrectly classified image +1→ |
| Number of incorrectly classified image |
| End if |
| End if |
| End for |
| Assign fitness score to the chromosome |
| End for |
| End for |
| 3. For every testing image do |
| voting = 0 |
| For every ROI do |
| Convert ROI into gray level |
| Compute all 26 features |
| 4. If voting > voting_threshold |
| Liver case = normal |
| Else |
| Liver case = Abnormal |
| End if |
| End for |
Figure 4 shows the general process and the training and the testing phases of the dataset for optimizing a grey ROI selection by using the GA. In the training phase stage, each image of the normal/fatty liver in the training set was employed for the planned work. Then, the thresholds and parameters were automatically selected and optimized by GA, such that this image was identified as a normal or fatty item, respectively. In the testing part, a whole image of the testing set was utilized in the suggested work. Then, according to the voting function, liver tissue was classified as normal/fatty liver.
Figure 4.
Elevating parameters using a GA and overall process, note: #→Number.
4. Results
This study developed a Computer-Aided Diagnosis technique using the Genetic Algorithm and machine learning algorithms (supervised learning), for the classification of liver skins as being fatty or natural, based on obtaining ultrasound image features and a voting-based classifier, based on a combination of 26 features.
4.1. Genetic Algorithm
In this study, 300 images were collected from 300 patients of 155 normal and 145 fatty cases. Every acquired image was processed as presented in Figure 5a; then, it was converted to a grey level image (by using Equation (1)), as shown in Figure 5b. As a consequence, a number of ROIs were carefully chosen within the liver tissue from the training set, as shown in Figure 5c. These suggested regions covered the tissue of the liver, as indicated by the specialized physician and experts.
Figure 5.
(a) Ultrasonic image (Original). (b) The transformed US image by using Equation (1). (c) The selected grey ROIs.
The collected data set was categorized into testing and training sets. The training images included 110 fatty images and 120 normal images. Whereas, the testing images involved 35 fatty images and 35 natural images.
The generation increased as “false negatives” or the number of wrongly classified US images decreased in the following figure “Best: 2” meant that only two images in the training set were mistakenly categorized, as presented in Figure 6.
Figure 6.
The change in penalty values due to generation numbers.
Table 3 exhibits the number of US images that were classified correctly or incorrectly. It also presents the evaluated classification percentages in the case of the training and testing images.
Table 3.
Classification percentages of the liver images.
4.2. Performance Evaluation Metrics
In our case, the number of testing images was 70 (35 + 35) for the two groups (fatty and natural). When no disease was found, True Negatives (TN) were observed, and the test was negative, while it was classified as false positive (FP) if the test was positive. Instead, if the disease was present, a positive or negative test indicated the observations were classified as True Positive (TP) or False Negative (FN) situations, respectively [17,48,49]. Subsequent performance measures are displayed in Table 4.
Table 4.
The values of TN, TP, FP, and FN.
Table 5 presents the robust widely used performance measures: sensitivity, accuracy, precision, specificity, and F1-score. Accuracy is an intuitive measure of accuracy and is simply the ratio of properly expected observations to total observations. Precision is a calculation of correctly expected real observations to total predicted real observations. The sensitivity (recall) is a ratio of the relevant instances that were regained. Specificity is a proportion of healthy persons who were correctly reported as not having the illness. Finally, the F1-Score is the average of sensitivity and precision. Consequently, the aforementioned score takes both FP and FN into account [48,49] These performance metrics are known by:
Table 5.
Evaluation of some performance metrics.
Table 6 introduces a comparison of the recognition rate of our proposed technique with that in [18,23,26,50]. Our proposed technique produced more accurate results than those in the referred references. The suggested method achieved better accuracy compared to other research. It should be noted that the work by other researchers used an ultrasound imaging system, which was better than the proposed image acquisition system. Our acquisition system was a very popular product in the field of medical equipment, because it was so inexpensive compared to other acquisition systems. The range of the transmitting frequency of the ultrasound in our device was the same with other devices. The resolution of 684 × 552 pixels in our device was lower than the resolution of other devices, e.g., 767 × 572 pixels and 1024 × 1024 pixels. Moreover, the research work by [18,23,26,50] used a greater number of extracted features, which required high computation complexity. The use of a smaller number of features allowed us to avoid the use of GPU as in [51,52].
Table 6.
Comparison between the suggested method and other systems.
4.3. Machine Learning Algorithms
Supervised learning algorithms were employed in this investigation to classify the liver tissues into fatty and normal using the same data set that was used before in the genetic algorithm. Several algorithms were applied to construct the classifier model, but we reported the greatest classifier decision tree (J48), that given the high accuracy, it achieved accuracy reaching up to 93.12%, according to the main parameters, the Kappa statistic was 0.85, mean absolute error was 0.069, root mean squared error was 0.26, relative absolute error was 0.1451, and root relative squared error was 0.5383.
This classifier was tested using the cross-validation (10 folds) method; in this method, the dataset was divided randomly into 10 folds, each fold was held out once to test the classifier, and the classifier was trained on the remaining (10-1) to build the classifier as shown in Figure 7 [44]. Each fold represented one iteration, in each iteration, the accuracy of the model was calculated, and the overall accuracy was calculated using the mean; this method was the best to evaluate the performance of the model, based on different measures mainly: TP rate, FP rate, Precision, recall, and F1-measure as shown in Table 7 and also presented in Figure 8. The Experimental Results were developed and evaluated using WEKA software version 3.6.11.
Figure 7.
Ten-fold cross-validation method.
Table 7.
Precision, Recall, and F1-Measure for J48 algorithm.
Figure 8.
Precision, Recall, and F1-Measure for J48 algorithm.
5. Conclusions
Early diagnosis of FLD is important to avoid advanced stages. Due to its low cost and availability, radiologists commonly use US imaging. However, it has problems in detecting this disease due to its low quality. The current study provided a technique to accurately distinguish between fatty/normal livers using ultrasound liver images. Ultrasound, as a noninvasive method, was known for diagnosing diffused liver diseases. In this work, multi ROIs were selected to reduce the required computations. From each ROI, 26 features were extracted. The acquired image of fatty tissue was characterized by bright echogenicity with high contrast and high variance. All thresholds and parameters were automatically selected via GA. The final result depended on the number of normal/fatty ROIs. The obtained TP was 94.28%, TN was 97.14%, FP was 5.71%, and FN was 2.85%. The achieved precision was 94.28%, sensitivity was 97.05%, specificity was 94.44%, and F1-score was 95.64%. The proposed work provided a high recognition percentage of 95.71% compared to previous research work, which achieved lower recognition accuracies 76.92%, 79.77%, 74.05%, 92.5%, 79%, 95.55%, and 93.3%. Moreover, it should be declared that the number of extracted features in the current study was lower than that found in the literature, which significantly achieved lower computational time in classifying the liver.
The limitation of our technique is a deficiency of available databases. Moreover, the low quality of acquisition ultrasound devices leads to a requirement for improved methods including more efficient functionality without degrading the ultrasound image content.
As future research, the accuracy of recognition of the proposed method could be improved by reducing the rate of False-Negative (FN) cases to allow us to better distinguish between closely resembling diseases. Future work would be on increasing the size of patient datasets to improve and increase the classification accuracy of the system and generalizing the proposed method to deal with US images. Class imbalance is also challenging. For instance, liver cirrhosis is usually so limited compared to other classes; e.g., liver steatosis, liver cancer, and liver fibrosis. Additionally, more specific classes can be added, e.g., stages of fibrosis; F1, F2, F3, and F4. It is should be mentioned that these classes of fibrosis are so difficult to be recognized by specialists radiologist. This is because some details are invisible to human eyes.
Before CAD technology and artificial intelligence are incorporated into routine clinical practice, several challenges must be overcome. For clinical use, if there are concerns about unreliable predictions, a CAD system must be able to justify its analysis.
The possibility that CAD will replace completely human decision making is unlikely in the meantime. Should CAD technology be used as the strategy of resect-and-discard for benign tumors then photo-documentation with high-resolution images marked with CAD decisions will be needed for medical-legal reasons.
Author Contributions
Conceptualization, A.G., H.A.Y., A.M.H. and A.H.; methodology, A.G., A.H., A.M.H. and H.A.Y.; software, A.G. and A.H.; validation, A.G., A.H., H.A.Y. and H.M.A.; investigation, A.G., A.H. and H.A.Y.; resources, A.G.; data curation, A.G., A.M.H. and H.A.Y.; writing—original draft preparation, A.G., A.H.; writing—review and editing, A.G., A.M.H. and H.A.Y.; supervision, A.H. and H.A.Y. All authors have read and agreed to the published version of the manuscript.
Funding
This research received no external funding.
Institutional Review Board Statement
Not applicable.
Informed Consent Statement
Not applicable.
Data Availability Statement
Data sharing is not applicable.
Acknowledgments
The authors are grateful to Elroowad Radiography Center (Menouf City, Egypt), especially to Ahmed F. Yonis for providing the USA images used in this investigation, and for supportive discussions.
Conflicts of Interest
The authors declare no conflict of interest.
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