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Article

Identifying Cardio-Metabolic Subtypes of Prediabetes Using Latent Class Analysis

1
Department of Special Clinical Disciplines, Medical Faculty, Khoja Akhmet Yassawi International Kazakh-Turkish University, Bekzat Sattarkhanov Street No. 29, Turkistan 161200, Kazakhstan
2
Department of Fundamental Sciences, Medical Faculty, Khoja Akhmet Yassawi International Kazakh-Turkish University, Bekzat Sattarkhanov Street No. 29, Turkistan 161200, Kazakhstan
3
Department of Biomedical Sciences, Nazarbayev University School of Medicine, Astana 010000, Kazakhstan
*
Author to whom correspondence should be addressed.
Med. Sci. 2025, 13(4), 243; https://doi.org/10.3390/medsci13040243
Submission received: 9 September 2025 / Revised: 22 October 2025 / Accepted: 23 October 2025 / Published: 25 October 2025
(This article belongs to the Section Endocrinology and Metabolic Diseases)

Abstract

Background/Objectives: Prediabetes (PreDM) is a heterogeneous condition, impacting hundreds of millions worldwide, associated with a substantially high risk of Type 2 Diabetes Mellitus (T2DM) and cardiovascular complications. Early identification of subgroups within the PreDM population may support tailored prevention strategies. Methods: We conducted a cross-sectional study using data from annual health check-ups of 419 university staff (aged 27–69) in Kazakhstan. Latent Class Analysis (LCA) was applied to identify subgroups of individuals with PreDM based on cardiovascular risk factors. Differences in glucose metabolism markers (fasting glucose, OGTT, HOMA-IR, HOMA-β) were compared across identified classes. Results: PreDM prevalence was 43.4%. LCA revealed four distinct classes: Class 1: healthy, low-risk individuals; Class 2: overweight with moderate metabolic risk; Class 3: older, overweight individuals with high cardio-metabolic risk; and Class 4: obese, middle-aged to older individuals with very high cardio-metabolic risk. Significant differences were found in glucose metabolism profiles across the classes. IFG predominated in Class 1 (95%), while Classes 3 and 4 had higher rates of β-cell dysfunction and combined IFG/IGT patterns. HOMA-β differed significantly between classes (p  <  0.001), while HOMA-IR did not. Conclusions: PreDM is highly prevalent in this working-age Kazakh population and demonstrates marked heterogeneity. Based on easily obtainable cardiovascular risk factors, we have identified four subgroups with distinct glucose profiles that may inform personalized interventions. These distinct subgroups may require differentiated prevention strategies, moving beyond a one-size-fits-all approach.

1. Introduction

Prediabetes (PreDM) is a heterogeneous condition, impacting hundreds of millions worldwide, associated with a substantially high risk of Type 2 Diabetes Mellitus (T2DM) and cardiovascular complications, that represents an intermediate state of hyperglycemia defined by the elevation of plasma glucose levels above normal levels but below the criteria of T2DM diagnosis [1]. It is a high-risk condition impacting hundreds of millions worldwide, with considerable consequences for cardiovascular health and the advancement of diabetes [2]. The relevance of identifying PreDM is twofold: First, because it represents an increased risk of progression to T2DM, as up to 50% of individuals with PreDM will develop T2DM within 3–5 years [3], and globally it is expected that by 2050, 12.9% of the adult population will have PreDM [4]. Second, because PreDM is reversible through lifestyle modification programs based on healthier diets and increased levels of physical activity and/or medications [5]. As the prevalence of both PreDM and T2DM and the burden associated with these conditions continue to rise worldwide, there is a critical and urgent unmet need to identify those at the highest risk of developing T2DM and intervene to curb this epidemic [6].
The prevalence of PreDM is difficult to estimate, as a significant proportion of persons (ranging from 8% to 21%, depending on the criteria) are unaware of their condition. Previous data from Kazakhstan reported an 8% prevalence of DM and 1.9% of PreDM diagnoses [7]. The proportion of people tested in routine clinical conditions is low, and there is also a significant risk of incidence of T2DM among those not tested [8]. A recent update of the US Preventive Services Task Force reports that screening for PreDM and T2DM and offering or referring patients with PreDM to effective preventive interventions has a moderate net benefit [9].
As well as the lack of epidemiological data, there continues to be significant controversy [10] surrounding the precise characterization of PreDM [11]: how the relationships between impaired fasting glucose (IFG), impaired glucose tolerance (IGT), elevated glycosylated hemoglobin (HbA1c), insulin resistance (IR), and β-cell deficit interrelated. There is also controversy regarding its association with demographic, behavioral, clinical, and biochemical characteristics, primarily related to cardiovascular risk, as well as how ethnic and genetic differences may interact with the previous mentioned factors. In fact, PreDM is being recognized not as a singular entity but as a heterogeneous group characterized by diverse pathophysiology, risk of progression to T2DM, and aggregation of risk factors. Such heterogeneity in PreDM challenges the traditional view of it, as noted in a study by Tabák et al. (2012), pointing out the need for personalized medicine strategies [12]. Consequently, the “one-size-fits-all” prevention approach may not apply to different PreDM phenotypes, calling for a precision approach by matching subtypes with effective interventions that prevent T2DM [13].
The objective of this work is to describe the main characteristics of a sample of a diabetes-free general population in Kazakhstan, an ethnically diverse population; describe the prevalence of PreDM in this population and their main characteristics; and identify possible subtypes of PreDM using Latent Class Analysis (LCA) to identify unobserved associations between cardio-metabolic factors and glucose metabolism indexes. The rationale for analyzing simple cardiovascular risk indicators is because while oral glucose tolerance tests (OGTTs) and insulin-based measures such as HOMA-IR and HOMA-β provide valuable information about glucose metabolism, they are rarely obtained in routine clinical practice, especially in low-resource settings. Simpler cardiovascular risk indicators such as age, BMI, waist circumference, blood pressure, and lipid profiles are universally measured and inexpensive. The use of these widely available markers in this work may therefore offer a pragmatic approach to identifying clinically relevant subgroups of individuals with PreDM, having the advantage of being more easily implemented in real-world contexts.

2. Materials and Methods

The reporting of this study will follow the STROBE recommendations for observational studies [14]. This is a cross-sectional study with data obtained from annual medical check-ups from 2019 and 2020 of employees of Khoja Akhmet Yassawi International Kazakh-Turkish University (Turkistan, Kazakhstan). Data were collected at the Clinical Diagnostic Center of the university during routine health screenings of employees. Participants underwent standardized clinical assessments, including anthropometric measurements, blood sampling, and a 2 h oral glucose tolerance test (OGTT), between January 2019 and December 2020.
Eligible participants for this study were employees of the University aged 27–69 years who provided written informed consent. Exclusion criteria were having already been diagnosed with T1 or T2DM or kidney disease. After obtaining written informed consent form, demographic data, lifestyle, anthropometric, and biochemical laboratory data were obtained.
The primary outcome of this study was PreDM, defined by WHO criteria (FG: 6.1–6.9 mmol/L; OGTT 2 h glucose: 7.8–11.1 mmol/L). Secondary outcomes were glucose metabolism markers (FG, OGTT, HOMA-IR, HOMA-β). The exposures were cardiovascular risk factors used in LCA (continuous variables: age, BMI, waist circumference, blood pressure, total cholesterol, LDL, HDL, triglycerides).
Laboratory methods included the determination of fasting glucose levels; after a 2 h oral glucose tolerance test (OGTT), triglycerides (TG), total cholesterol (TC), high-density lipoprotein (HDL), and low-density lipoprotein (LDL) were measured. Blood sampling was carried out from the cubital vein after a 12 h fast. OGTT was performed with 75 g glucose solution. Plasma glucose levels were measured after 0 and 120 min. For PreDM, fasting glucose was taken as 6.1–6.9 mmol/L, after OGTT—7.8–11.1 mmol/L (WHO). Biochemical studies were determined in a biochemical analyzer (Cobas Integra-400 from Roche (Basel, Switzerland)). The laboratory determinations were carried out in the laboratory of the Clinical Diagnostic Center of Khoja Akhmet Yassawi International Kazakh-Turkish University.
HOMA-IR and HOMA-β were calculated and divided into 2 categories, namely IR and poor β-cell function. HOMA models were calculated as HOMA-IR = fasting insulin (lU/mL) × fasting glucose (mmol/L)]/22.5, and HOMA-β = [20 × fasting insulin (lU/mL)]/[fasting glucose (mmol/L) − 3.5]. IR was defined as values HOMA_IR ≥ 2.5 and poor β-cell function when HOMA-β ≤ 50 [15,16,17].
Kolmogorov–Smirnov and skewness tests were applied to assess normality of quantitative variables. The median and IQR were used since the continuous data was distributed non-normally. Categorical variables were described using frequency distribution. Pearson’s Chi-square test was used to compare characteristics between the healthy and the PreDM populations. To compare indices of groups divided based on HOMA indexes, we used Kruskal–Wallis tests.
Latent Class Analysis (LCA) for continuous variables was used to generate homogeneous groups of PreDM participants based on cardiovascular risk factors (age, BMI, waist and hip circumference, systolic and diastolic blood pressure, total cholesterol, LDL, HDL, and triglycerides). Bonferroni post hoc analysis was conducted to determine the inter-group significant differences. The appropriate number of classes were chosen based on the Akaike information criterion (AIC) and Bayesian information criterion (BIC) [18]. We then explored the cardio-metabolic characteristics of these LCA classes.
This study was performed in accordance with relevant guidelines/regulations and with the Declaration of Helsinki. This study was approved by Khoja Akhmet Yassawi International Kazakh-Turkish University (No. 27/2; 23 September 2019) and Nazarbayev University School of Medicine (2023March#01 and 2023March#02) Research Ethics Committees.

3. Results

3.1. General Description of the Sample

Initially, the dataset contained records of 632 participants initially recruited in 2012–24. A total of 213 respondents were excluded due to missing data and FG ≥ 7.0 mmol/L or OGTT ≥ 11.1 mmol/L indicators, while fasting glucose and OGTTs were only available for 476 individuals who had fully completed data. The total sample comprised 419 subjects, of which 182 (43.4% of the study population) were compatible with PreDM criteria (Figure 1).
The general characteristics of the study population are shown in Table 1. The PreDM group showed a higher prevalence of obesity, high BMI, and age of 50 and older. No differences in the proportions of men and women were identified. The PreDM showed a higher proportion of older participants (p < 0.0001).
The proportion of ethnic Kazakhs did not show significant differences between both groups. Table 2 reports the biochemical, clinical, and metabolic characteristics of the study group. The median fasting (6.2 (0.7) vs. 5.0 (0.54) mmol/L, p < 0.001) and 2 h (5.8 (1.85) vs. 5.3 (0.8) mmol/L, p < 0.001) plasma glucose levels after oral glucose challenge in the PreDM group were significantly higher than those of healthy individuals.
Regarding the study’s power to detect significant statistical differences, for α = 0.05 and an effect size (d) of 0.5, the power to detect significant differences in the prevalence of PreDM is approximately 99%. The study had a statistical power of 99.6% to detect the observed differences in fasting glucose levels across the four latent classes (Cohen’s f = 0.42).

3.2. LCA Group Definitions and Their Cardio-Metabolic Characteristics

  • Class 1: Healthy, low risk (n = 62; 34.1% of PreDM group; median age: 35 years, BMI: 24.8 kg/m2), predominantly IFG (95%, 95% CI: 89–98%).
  • Class 2: Overweight, moderate risk (n = 48; 26.4%; median age: 42 years, BMI: 27.5 kg/m2), with 18% IFG + IGT (95% CI: 10–29%).
  • Class 3: Older, overweight, high risk (n = 42; 23.1%; median age: 55 years, BMI: 29.2 kg/m2), with 33% IFG + IGT (95% CI: 21–47%) and 40% β-cell dysfunction (HOMA-β ≤ 50, 95% CI: 27–55%).
  • Class 4: Obese, middle-aged to older, very high risk (n = 30; 16.5%; median age: 52 years, BMI: 32.1 kg/m2), with 30% IFG + IGT (95% CI: 17–47%) and 50% β-cell dysfunction (95% CI: 34–66%).
Significant differences were found in FG (p < 0.001), OGTT (p = 0.003), and HOMA-β (p = 0.006) across classes, but not HOMA-IR (p = 0.12). Bonferroni post hoc tests confirmed FG differences between Class 1 vs. Classes 3–4 (p < 0.01). The cardiovascular risk profiles of the four LCAs are shown in Section 3.2 and their glucose metabolism characteristics in Table 3. Table 4 shows AIC (4235.6) and BIC (4356.2) favored a four-class model.
The violin plots in Figure S1 in the Supplementary Material display the distribution of anthropometric and biochemical markers across the four latent classes. Body Mass Index, waist circumference, and hip circumference progressively increase from the young mid-risk to the obese high-risk group, reflecting the severity of adiposity. The obese high-risk group shows the highest median and widest spread, indicating a broad range of obesity-related risk. Elevated blood pressure is most prominent in the older overweight high-risk and obese high-risk groups, suggesting a clustering of hypertension with metabolic dysfunction. Triglycerides are substantially higher in the obese high-risk group, consistent with IR. HDL cholesterol is lowest in the same group, reinforcing the adverse lipid pattern. LDL and total cholesterol show less marked variation, though slightly higher medians are noted in the higher-risk groups.
Table 4 shows the AIC and BIC of the different groups tested while conducting the LCA, being the most favorable when selecting four subgroups.

4. Discussion

This study highlights a high prevalence of PreDM (43.4%) in a working-age Kazakh population and reveals substantial heterogeneity in its presentation. This percentage is much higher than previously reported rates, likely due to under-diagnosis, less representative study populations, and limited screening methods in earlier studies. Four distinct latent classes were identified, reflecting differences in age, anthropometric measurements, cardiovascular risk factors, and glucose metabolism profiles.
The overall high prevalence of PreDM in this population is consistent with regional data, though higher than previous estimates in Kazakhstan, most likely reflecting differences in the populations analyzed. The PreDM population has a significantly higher prevalence of obesity (46.7% vs. 27.4%, p < 0.000) and abdominal obesity (67.0% vs. 41.7%, p < 0.000) compared to the healthy population (Table 1) [19,20], and is more frequent at advanced ages [21,22]. Patients with PreDM already show some vascular complications typically associated with DM [23] and associations with abnormal irregular fluctuations in blood pressure [24] and elevated cardiovascular risk [25,26].
The second finding of this work is the significant heterogeneity in the PreDM population. Previous LCA and cluster analysis studies also identified heterogeneous risk profiles within PreDM, confirming that PreDM encompasses subtypes with variable pathophysiological features, ranging from isolated IFG to combined IFG/IGT with β-cell dysfunction. Our results add to this evidence from a Central Asian context, suggesting that population-specific characteristics such as age distribution and ethnic composition shape the distribution of metabolic phenotypes.
LCA effectively uncovers subclinical heterogeneity in a group that might all meet generic “PreDM” criteria but differ in underlying mechanisms (e.g., IR vs. β-cell failure). These differences may be associated with variability in the future risk of progression to T2DM or cardiovascular disease, as well as a potential for differential response to preventive interventions. Possible pathophysiological differences in the four groups may be as follows:
  • Age-Related Changes in Glucose Metabolism: Older age in Clusters 3 and 4 is associated with a combined increase in IR and progressive β-cell decline, while higher IFG but lower IGT in younger participants (Cluster 1), may reflect hepatic IR and still-compensating β-cells.
  • Obesity and IR Patterns: The worst glycemia is identified in Cluster 4, characterized by high-risk obesity, but with no significant difference in HOMA-IR. This may reflect adipose-related IR affecting both the liver and peripheral tissues, and failing compensatory hyperinsulinemia due to β-cell exhaustion. Despite the lack of statistically significant differences in HOMA-IR between clusters, the observed decline in β-cell function in this cluster suggests that depletion of β-cell insulin secretory capacity, rather than insulin resistance itself, may play a major role in diabetes progression in this population.
  • β-cell function and compensation: The declining HOMA-β across clusters indicates progressive β-cell dysfunction, with the lowest values observed in Clusters 3 and 4. Despite similar HOMA-IR values across groups, this suggests insufficient compensation in older and obese groups.
  • Glucose dysregulation: suggested by diverse IFG vs. IGT vs. IFG + IGT profiles:
    • High IFG: predominantly hepatic IR (Cluster 1);
    • IFG + IGT: mixed and advanced hepatic and muscle IR (in Clusters 3 and 4);
    • Increasing IGT/IFG + IGT: a transitional group with early decline in β-cell function (Cluster 2).
The glucose metabolism disturbance leading to PreDM and eventually to T2DM and further complications varies across individuals, depending on different risk factors. This heterogeneity makes preventing T2DM difficult [27,28,29,30]. People with PreDM also differ in their characteristics and in how they respond to prevention strategies [31,32,33]. Studies show that 36–60% of individuals with PreDM can return to normal blood sugar levels [34,35], suggesting that environmental, genetic, and ethnic factors influence both the risk of T2DM and the effectiveness of prevention efforts [36,37].
Unsupervised learning methods, such as cluster analysis or LCA, have been used to generate homogeneous groups of PreDM that may reflect sub-phenotypes expressing different pathophysiological trajectories, risk of progression and preventive approaches. Wagner identified six distinct clusters: while three sub-phenotypes had increased glycemia, only individuals in Clusters 5 and 3 had short-term T2DM risk. By contrast, those in Cluster 6 had a moderate risk of T2DM, but an increased risk of kidney disease and all-cause mortality [38]. Prystupa found six clusters with different risks of developing T2DM and overall mortality [39]. Cho found six population clusters with significantly different prevalence rates of T2DM which also showed different clinical and biochemical profiles [40]. Yacaman Mendez identified six risk phenotypes: very-low-risk (VLR), low-risk low-β-cell-function (LRLB), low-risk high-β-cell-function (LRHB), high-risk high-blood-pressure (HRHBP), high-risk β-cell-failure (HRBF), and high-risk insulin-resistant (HRIR). The HRHBP, HRBF, and HRIR clusters showed a higher risk of developing T2DM [41]. Li, using K-means clustering, obtained six clusters of individuals presenting disparate patterns of polygenic risk scores and different patterns of metabolic traits [42]. Two potential genetic subtypes of PreDM showed relatively high risk of T2DM over time, observing also that individuals in one subtype may realize extra benefits in terms of risk reduction from a healthy lifestyle.
Based on biomarkers of subclinical inflammation, Huemer derived an inflammation-related score (“inflammatory load”) using principal component analysis, identifying that high cardio-metabolic risk corresponded to the high inflammatory load in some clusters, but not to the lower inflammatory load of high-risk clusters [43].
Several authors have also explored how ethnic and genetic differences may be associated with differences in PreDM characteristics. Fowler described that impaired β-cell function may underlie T2DM etiology more profoundly in Non-Hispanic Blacks. In contrast, hepatic dysfunction, lipid metabolism abnormalities, and genetic IR contribute to T2DM etiology to a greater degree in both Non-Hispanic Blacks and Hispanics [44]. Analyzing data from Taiwan and UK biobanks, Onthoni identified two stable clusters that represent high- and low-risk diabetes groups in both biobanks. The high-risk clusters showed higher diabetes incidence, with 15.7% in Taiwan and 13.0% in the UK, compared to 7.3% and 9.1% in the low-risk clusters, respectively. In Taiwan, the high-risk group also exhibited significantly higher BMI, fasting glucose, and triglycerides, while in the UK there was marginal significance in BMI and other metabolic indicators [45].
LCA is a robust statistical approach that, applying mixture modeling, permits us to identify best-fitting optimal aggregation of cases based on the existence of unobserved latent classes or subgroups within the data classes [46]. Unlike traditional analyses, which seek to elucidate associations between predefined independent variables and known outcomes, LCA delineates homogeneous groups of individuals based on shared patterns across multiple baseline variables. While sharing conceptual similarities with cluster analysis, LCA is grounded in a measurement model akin to factor analysis, facilitating the detection of inherent heterogeneity in population-level individual variations that may not be directly observable [47].
The identified LCA could possibly offer a framework for precision medicine in PreDM management. For instance, Class 1 with low risk may be effectively managed with lifestyle modification alone. Class 2 represents an intermediate group suitable for targeted behavioral counseling. Classes 3 and 4 are more likely to warrant early pharmacological interventions.
This study has also limitations. Firstly, this is a small-sample-size study from a selected working-age population. Further validation is required in larger and more diverse samples to confirm if the results could be generalized. Additionally, the glucose homeostasis indices may be valid only for the specific Kazakh population in which they were obtained as they may be influenced by ethnic or genetic factors. Secondly, the cross-sectional design of the study precludes inference of causality or progression to T2DM. This study relies solely on WHO criteria and in those in the sample had these data available (IFG: 6.1–6.9 mmol/L; IGT: 7.8–11.1 mmol/L via OGTT); HbA1c was omitted, limiting comparability to global studies utilizing the metrics of the American Diabetes Association [2]. In this study, we established specific cut-off points for HOMA-IR and HOMA-β; other cut-off points may have rendered different results. The inclusion of inflammatory markers, such as C-reactive protein, and liver enzymes were not collected in this study so although they may have meaningful associations with glucose dysregulation, their effect was not possible to estimate. Additionally, lifestyle, dietary, and genetic data were also unavailable, which may have further informed class differentiation. A lack of standardized universal insulin assays limits their use for routine assessment of IR in the clinical setting and may have affected our results. Lastly, the aim of this study was not to elucidate the mechanistic explanations of the associations that may have been identified by analyzing these data. An important rationale for our approach is that OGTT and insulin measures are not routinely available in general practice settings, particularly in low- and middle-income countries. By building the LCA model on simple cardiovascular risk factors, we sought to explore whether readily obtainable clinical and biochemical data could still capture meaningful heterogeneity among individuals with PreDM, making these findings potentially more translatable to clinical settings where physicians must often make preventive decisions without detailed metabolic testing. Nevertheless, it should be emphasized that these subgroups are not mechanistic categories, and their predictive value for progression to T2DM or cardiovascular outcomes requires validation in longitudinal studies. Future research should also compare the performance of LCA-based subgrouping against existing simple risk scores (e.g., FINDRISC, ADA risk score) to assess incremental clinical value.
Despite these limitations, this study is one of the first that has applied data-driven strategies to stratify PreDM in Central Asia, confirming that LCA is an innovative and effective method for grouping individuals with PreDM. It has the advantage, compared to hierarchical or k-means clustering, of the possibility of statistics (AIC, BIC) tests that help to determine the best number of classes. The sample size was powered enough to identify the prevalence of PreDM and to detect clinically meaningful variations in glucose metabolism profiles.

5. Conclusions

The application of LCA showed the heterogeneity that exists in the widespread PreDM population in Kazakhstan. Four classes emerged, characterized by different cardio-metabolic profiles, suggesting possible different physio-pathological pathways and that different interventions may be appropriate to prevent the onset of T2DM in each of them [48,49]. Furthermore, the identified profiles can be leveraged to facilitate precision management strategies, underscoring the imperative for their implementation [50]. The four LCA-derived groups align well with clusters identified in other populations, although in this study β-cell deficit is a key differentiator, especially in older, overweight high-risk individuals. However, non-significant HOMA-IR differences and lack of lipid/inflammation data set this study apart, suggesting unique cohort characteristics or methodological influences.
Further longitudinal studies are needed to investigate the incidence of Type 2 Diabetes, but this study highlights the importance of determining patients’ cardio-metabolic profile for effective T2DM prevention, as well as their ethnic background. These pathophysiological differences should determine the appropriate therapeutic approach [51,52,53,54,55]. Kazakhstan is an ethnically diverse Central Asian country whose genetic characteristics may hold an intermediate position between South and Eastern Asian and European populations [55]. Evidence-based preventive interventions will require contextualization based on the characteristics of the populations that will receive them [56,57]. Diabetes is a complex disease with a complex interplay of genetic, clinical, and environmental factors, and its pathophysiology may vary substantially across populations. Therefore, the specific subgroups identified in one population, like those found in this study, should not be expected to be replicated with the same profiles in other settings. Instead, heterogeneity across populations should be anticipated and understood as a reflection of contextual influences on risk of progression to T2DM and, later, to diabetes-related complications [58]. From this perspective, the possible lower generalizability of context-specific studies may not be less problematic, as the aim and contribution of each study is to mapping the diversity of PreDM phenotypes in specific populations, rather than aiming for universal generalizability.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/medsci13040243/s1, Figure S1. Violin plots representing the distribution of participants included in the 4 LCA groups identified.

Author Contributions

Conceptualization, A.S.-S., M.L., A.Z., A.K., G.N. and Y.S.; Data curation, Y.S., M.L. and A.Z.; Formal analysis, A.S.-S., M.L. and A.Z.; Funding acquisition, G.N. and Y.S.; Investigation, G.N., Y.S., K.S., M.Z., N.N. and K.B.; Methodology, A.S.-S.; Project administration, G.N., Y.S. and A.S.-S.; Supervision, G.N., Y.S. and A.S.-S.; Visualization, A.S.-S., M.L. and A.Z.; Writing—original draft, A.S.-S., M.L. and A.Z.; Writing—review and editing, A.K., G.N., Y.S., K.S., M.Z., N.N. and K.B. All authors have read and agreed to the published version of the manuscript.

Funding

This research is funded by the Science Committee of the Ministry of Science and Higher Education of the Republic of Kazakhstan (Grant No. AP19676909) and a grant from the Best University Teacher (BUT) 2024 competition.

Institutional Review Board Statement

This study was performed in accordance with relevant guidelines/regulations and in accordance with the Declaration of Helsinki. This study was approved by Khoja Akhmet Yassawi International Kazakh-Turkish University ((No. 27/2; 23 September 2019) and Nazarbayev University School of Medicine (2023March#01 and 2023March#02) Research Ethics Committees.

Informed Consent Statement

Informed consent was obtained from all subjects involved in the study.

Data Availability Statement

The data presented in this study are available upon request from the corresponding author (Because of confidentiality and approval from ethics committees, data is available on request to the corresponding author).

Conflicts of Interest

The authors declare no conflict of interest. The sponsors had no role in the design, execution, interpretation, or writing of the study.

Abbreviations

The following abbreviations are used in this manuscript:
T2DMType 2 Diabetes Mellitus
PreDMPrediabetes
LCALatent Class Analysis
BMIBody Mass Index
HOMAHomeostatic Model Assessment
OGTTOral Glucose Tolerance Test
IRInsulin Resistance
IFGImpaired Fasting Glucose
IGTImpaired Glucose Tolerance

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Figure 1. Flow chart for the participant selection for the study. Notes: FG—fasting glucose, OGTT—oral glucose tolerance test; *—mmol/L.
Figure 1. Flow chart for the participant selection for the study. Notes: FG—fasting glucose, OGTT—oral glucose tolerance test; *—mmol/L.
Medsci 13 00243 g001
Table 1. General characteristics of the study population.
Table 1. General characteristics of the study population.
CharacteristicsNormoglycemicPrediabetesp
Frequency%Frequency%
SexMen 59 24.9 59 32.4 NS
Women 178 75.1 123 67.6
Age groups (years)20–29 8 3.40 0 0 <0.000
30–39 75 31.6 21 11.5
40–49 66 27.8 38 20.9
50–59 61 25.7 62 34.1
60–69 27 11.4 61 33.5
Kazakh 204 86.1 166 91.2 NS
BMI (kg/m2)Normal 97 41.0 27 14.8 <0.000
Overweight 75 31.6 70 38.5
Obese 65 27.4 85 46.7
Waist circumference (cm)M: <94;
F: <80
9138.42714.8<0.000
M: 94–102;
F: 80–88
47 19.8 33 18.1
M: 102<;
F: 88<
99 41.7 122 67.0
Insulin resistance 38 16.0 58 31.9 <0.000
Poor beta-cell function 22 9.28 87 47.8 <0.000
Total number of participants 237 56.6 182 43.4
Table 2. Clinical, biochemical, and metabolic characteristics of the study population.
Table 2. Clinical, biochemical, and metabolic characteristics of the study population.
CharacteristicsNormoglycemicPrediabetesp
MedianIQRMedianIQR
Age (years)45145516<0.000
BMI 26.307.8929.387.30<0.000
Waist circumference (cm)89209715<0.000
Hip circumference (cm)1011410813<0.000
SBP (mmHg)1103014040<0.000
DBP (mmHg)802082.510<0.000
Total cholesterol (mmol/L)4.800.85.101.10<0.000
LDL-cholesterol (mmol/L)2.100.712.360.69<0.000
HDL-cholesterol (mmol/L)1.260.241.170.250.009
TG (mmol/L)1.971.212.070.920.034
Fasting glucose (mmol/L)5.00.546.200.7<0.000
OGTT (mmol/L)5.30.85.801.85<0.000
Fasting insulin (µU/mL)7.734.777.525.02<0.000
HOMA-IR1.671.022.021.36<0.000
HOMA-beta114.092.9952.8445.69<0.000
Notes: SBP—systolic blood pressure, DBP—diastolic blood pressure, LDL—low-density lipoprotein, HDL—high-density lipoprotein, TG—triglycerides, OGTT—oral glucose tolerance test.
Table 3. Cardiovascular risk factors and glucose metabolism indexes of the 4 prediabetes latent classes.
Table 3. Cardiovascular risk factors and glucose metabolism indexes of the 4 prediabetes latent classes.
Healthy,
Low Risk
Overweight,
Moderate Risk
Older, Overweight, High RiskObese, Middle-Aged to Older, Very High Riskp
%20.819.838.520.8
Fasting glucose5.996.176.286.680.001
OGTT5.516.196.516.580.003
HOMA IR2.352.251.962.340.194
HOMA beta72.2165.6352.7551.830.006
IFG95.0%78.9%68.9%62.5%0.001
IGT0% 2.6%5.4%5.0%0.030
IFG + IGT5.0%18.4%25.7%32.5%0.001
IR45.0%36.8%23.0%35.0%0.097
Beta-cell deficit30.0%39.5%60.8%55.0%0.008
Notes: OGTT—oral glucose tolerance test, IR—insulin resistance, IFG—impaired fasting glucose, IGT—impaired glucose tolerance.
Table 4. Aikake (AIC) and Bayesian Information Criteria (BIC) values for the different Latent Class Analysis.
Table 4. Aikake (AIC) and Bayesian Information Criteria (BIC) values for the different Latent Class Analysis.
ModelLog-likelihood dfAICBIC
2 Classes−4870.519349809.0399919.794
3 Classes−4792.777469677.5549827.399
4 Classes−4741.992589599.9859788.92
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Nuskabayeva, G.; Saruarov, Y.; Sadykova, K.; Zhunissova, M.; Nurdinov, N.; Babayeva, K.; Li, M.; Zhailkhan, A.; Kabibulatova, A.; Sarria-Santamera, A. Identifying Cardio-Metabolic Subtypes of Prediabetes Using Latent Class Analysis. Med. Sci. 2025, 13, 243. https://doi.org/10.3390/medsci13040243

AMA Style

Nuskabayeva G, Saruarov Y, Sadykova K, Zhunissova M, Nurdinov N, Babayeva K, Li M, Zhailkhan A, Kabibulatova A, Sarria-Santamera A. Identifying Cardio-Metabolic Subtypes of Prediabetes Using Latent Class Analysis. Medical Sciences. 2025; 13(4):243. https://doi.org/10.3390/medsci13040243

Chicago/Turabian Style

Nuskabayeva, Gulnaz, Yerbolat Saruarov, Karlygash Sadykova, Mira Zhunissova, Nursultan Nurdinov, Kumissay Babayeva, Mariya Li, Akbota Zhailkhan, Aida Kabibulatova, and Antonio Sarria-Santamera. 2025. "Identifying Cardio-Metabolic Subtypes of Prediabetes Using Latent Class Analysis" Medical Sciences 13, no. 4: 243. https://doi.org/10.3390/medsci13040243

APA Style

Nuskabayeva, G., Saruarov, Y., Sadykova, K., Zhunissova, M., Nurdinov, N., Babayeva, K., Li, M., Zhailkhan, A., Kabibulatova, A., & Sarria-Santamera, A. (2025). Identifying Cardio-Metabolic Subtypes of Prediabetes Using Latent Class Analysis. Medical Sciences, 13(4), 243. https://doi.org/10.3390/medsci13040243

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