An Object-Based Image Analysis Approach Using Bathymetry and Bathymetric Derivatives to Classify the Seafloor
Abstract
:1. Introduction
2. Study Area, Materials, and Methods
2.1. Study Areas
2.1.1. The Base Geo-Tiff Images
2.1.2. Bathymetric Derivative Layers
Slope
Smoothed Slope
Curvature
Aspect
Bathymetric Position Index
2.2. Methods
2.2.1. Object-Based Image Analysis
Image Objects
Creating Image Objects by Multiresolution Segmentation
2.2.2. Classification
- Method 1 is threshold based and uses image object features from the backscatter, bathymetry, and layers. The thresholds are those used in the 2016 OBIA workshop of the GeoHab conference [35] and were developed at the Center for Environment Fisheries and Aquaculture Science (CEFAS) [56]. This approach was not developed within the current research, but its results are considered as a standard to which Methods 2 and 3 can be measured.
- Method 2 uses a Classification And Regression Tree (CART), a binary tree predictive model to go from observations about an item to conclusions about the items target value or class (a more in-depth description follows below) [57]. The CART provides the thresholds which are then used in a similar way as in Method 1. This method uses only texture features from image objects.
- Method 3 is similar to Method 2, however, it uses both texture and direct layer image object features. That is, it does not only use texture-based features, which relate to the arrangement of layer values, but it also references layer values directly, such as the average depth within an image object.
3. Results
3.1. Røstbanken Results
3.1.1. Method 1, Backscatter Based Classification
3.1.2. Method 2, Classification Using Only Textural Image Object Features
3.1.3. Method 3, Classification Using Image Object Parameters and Non Backscatter Data
3.1.4. Comparing Non-Backscatter Based Classification to Backscatter Based Classification
3.2. Borkumer Stones Results
4. Discussion
4.1. The Performance of OBIA Methods
4.2. Application of the Algorithm to Different Datasets
4.3. The Affect of Bathymetry Flaws
4.4. Good Use-Cases for Bathymetry Based OBIA Based Classification
5. Summary and Conclusions
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
CART | Classification and regression tree |
DCS | Dutch continental shelf |
DISCLOSE | Distribution, Structure and functioning of low resilience benthic communities and habitats of the Dutch North Sea |
EMODNet | European Marine Observation and Data Network |
GPS | Global positioning system |
m | Meter |
MBES | Multibeam echosounder |
MRU | Motion reference unit |
NIOZ | Royal Netherlands Institute for Sea Research |
OBIA | Object-based image analysis |
QPS | Quality Positioning Systems |
RVO | Rijksdienst voor Ondernemend Nederland (Netherlands Enterprise Agency) |
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15 m | |
25 m | |
50 m | |
125 m | |
250 m | |
500 m | |
1 km | |
2 km | |
4 km | |
5 km |
Segment. Level | Scale Parameter () | Shape () | Compact. () | Layer Weights () | Layers |
---|---|---|---|---|---|
1 | 3 | 0.02 | 0.5 | 1 1 1 2 2 2 2 2 2 1 2 | Bathymetry Curvature Slope |
2 | 10 | 0.02 | 0.5 | 1 1 1 2 2 2 2 2 2 1 2 | Bathymetry Curvature Slope |
3 | 50 | 0.5 | 0.5 | 1 | BPI 400 |
Grab Sample Class | |||||||||
---|---|---|---|---|---|---|---|---|---|
sM | S | gS | sG | G | R | Row Totals | Accuracy | ||
Backscatter-based class | sM | 42 | 7 | 0 | 0 | 0 | 0 | 49 | 85.7% |
S | 0 | 16 | 4 | 1 | 0 | 0 | 21 | 76.2% | |
gS | 0 | 4 | 21 | 5 | 1 | 0 | 31 | 67.7% | |
sG | 0 | 0 | 9 | 18 | 2 | 0 | 29 | 62.0% | |
G | 0 | 0 | 0 | 6 | 10 | 5 | 21 | 47.6% | |
R | 0 | 0 | 0 | 0 | 2 | 6 | 8 | 75.0% | |
Column totals | 42 | 27 | 34 | 30 | 15 | 11 | Overall accuracy: | 71.1% |
Layer Name | Number of Times Referenced | Object Feature Description |
---|---|---|
Slope(2) | 4 | The standard deviation of the means of the slope values within sub-objects at Level 1 [55] (pp. 402–403) or the average of the mean differences of each sub-object to its neighboring objects at Level 1 [55] (pp. 403–404). |
Std area of sub-obj(2) | 4 | The standard deviation of the area of the image objects at Level 1 that fall into the image object in question at Level 3. |
Mean of dir. sub-obj(1) | 4 | The mean of the main direction of all of the sub objects at Level 2 that are in the object in question at Level 3. |
Slope(1) | 3 | The standard deviation of the means of the slope values within sub-objects at Level 2 [55] (pp. 402–403) or the average of the mean differences of each sub-object to its neighboring objects at Level 2 [55] (pp. 403–404). |
Mean asymmetry of sub-objects(1) | 2 | The mean of the asymmetry of sub-objects at Level 2 that fall within the object in question at Level 3. Asymmetry is the relative length of an image object compared to a regular polygon (a similar measure as the Length/Width) [55] (pp. 357–358) |
Std of dir. sub-obj(2) | 2 | The standard deviation of the main direction of all of the sub objects at Level 2 that are in the object in question at Level 3. |
Std of dir. sub-obj(1) | 1 | The standard deviation of the main direction of all of the sub objects at Level 1 that are in the object in question at Level 3. |
Bathymetry(2) | 1 | The standard deviation of the means of the bathymetry values within sub-objects at Level 1 [55] (pp. 402–403) or the average of the mean differences of each sub-object to its neighboring objects at Level 1 [55] (pp. 403–404). |
Mean area of sub-obj.(1) | 1 | The mean area of the image objects at Level 2 that fall into the image object in question at Level 3. |
Std of area of sub-obj(1) | 1 | The standard deviation of the area of the image objects at Level 2 that fall into the image object in question at Level 3. |
Std of dir. sub-obj(2) | 1 | The standard deviation of the area of the image objects at Level 1 that fall into the image object in question at Level 3. |
Grab Sample Class | |||||||||
---|---|---|---|---|---|---|---|---|---|
sM | S | gS | sG | G | R | Row Totals | Accuracy | ||
OBIA-based class | sM | 14 | 1 | 3 | 2 | 1 | 0 | 21 | 66.7% |
S | 0 | 3 | 2 | 1 | 1 | 0 | 7 | 42.9% | |
gS | 5 | 8 | 9 | 4 | 1 | 1 | 28 | 32.1% | |
sG | 1 | 1 | 1 | 4 | 0 | 0 | 7 | 62.2% | |
G | 1 | 0 | 2 | 3 | 2 | 1 | 9 | 22.2% | |
R | 0 | 0 | 0 | 1 | 2 | 3 | 6 | 50.0% | |
Column totals | 21 | 13 | 17 | 15 | 7 | 5 | Overall accuracy: | 44.9% |
Layer Name | Number of Times Referenced | Object Feature Description |
---|---|---|
Bathymetry | 4 | The mean of the within object pixels (at Level 3) of the bathymetry layer. |
Length/width | 3 | The ratio of the length/width of an image object at Level 3 [55] (pp. 353–354) |
Elliptic fit | 2 | The shape of the image object at Level 3 is compared to an ellipse the same length and width as the image object. The area of the image object that falls outside the ellipse vs. the area inside the ellipse yields the fit value [55] (pp. 362–363) |
Std of dir. sub-obj(1) | 2 | The standard deviation of the main direction of all of the sub objects at Level 2 that are in the object in question at Level 3. |
Bathymetry(2) | 2 | The standard deviation of the means of the bathymetry values within sub-objects at Level 1 [55] (pp. 402–403) or the average of the mean differences of each sub-object to its neighboring objects at Level 1 [55] (pp. 403–404). |
Std of dir. sub-obj(2) | 2 | The standard deviation of the main direction of all of the sub objects at Level 1 that are in the object in question at Level 3. |
1 | The mean of the within object pixels (at Level 3) of the layer. | |
1 | The mean of the within object pixels (at Level 3) of the layer. | |
(1) | 1 | The standard deviation of the means of the values within sub-objects at Level 2 [55] (pp. 402–403) or the average of the mean differences of each sub-object to its neighboring objects at Level 2 [55] (pp. 403–404). |
(2) | 1 | The standard deviation of the means of the values within sub-objects at Level 1 [55] (pp. 402–403) or the average of the mean differences of each sub-object to its neighboring objects at Level 1 [55] (pp. 403–404). |
(2) | 1 | The standard deviation of the means of the values within sub-objects at Level 1 [55] (pp. 402–403) or the average of the mean differences of each sub-object to its neighboring objects at Level 1 [55] (pp. 403–404). |
Mean area of sub-obj.(2) | 1 | The mean area of the image objects at Level 1 that fall into the image object in question at Level 3. |
Grab Sample Class | |||||||||
---|---|---|---|---|---|---|---|---|---|
sM | S | gS | sG | G | R | Row Totals | Accuracy | ||
OBIA-based class | sM | 19 | 3 | 2 | 0 | 0 | 0 | 21 | 90.5% |
S | 0 | 4 | 2 | 0 | 0 | 1 | 7 | 57.1% | |
gS | 0 | 2 | 8 | 3 | 0 | 0 | 13 | 61.5% | |
sG | 0 | 4 | 5 | 9 | 1 | 0 | 19 | 47.4% | |
G | 2 | 0 | 0 | 2 | 5 | 1 | 10 | 50.0% | |
R | 0 | 0 | 0 | 1 | 1 | 3 | 5 | 60.0% | |
Column totals | 21 | 13 | 17 | 15 | 7 | 5 | Overall accuracy: | 61.5% |
Layer Name | Number of Times Referenced | Object Feature Description |
---|---|---|
Smoothed slope | 6 | The mean of the within object pixels (at Level 3) of the smoothed slope layer. |
Elliptic fit | 4 | See Table 6 |
Bathymetry | 3 | The mean of the within object pixels (at Level 3) of the bathymetry layer. |
3 | The mean of the within object pixels (at Level 3) of the layer. | |
Bathymetry(2) | 3 | See Table 4 |
2 | The mean of the within object pixels (at Level 3) of the layer. | |
(2) | 2 | The standard deviation of the means of the values within sub-objects at Level 1 [55] (pp. 402–403) or the average of the mean differences of each sub-object to its neighboring objects at Level 1 [55] (pp. 403–404). |
Smoothed slope(1) | 2 | The standard deviation of the means of the smoothed slope values within sub-objects at Level 2 [55] (pp. 402–403) or the average of the mean differences of each sub-object to its neighboring objects at Level 2 [55] (pp. 403–404). |
Slope(1) | 2 | The standard deviation of the means of the slope values within sub-objects at Level 2 [55] (pp. 402–403) or the average of the mean differences of each sub-object to its neighboring objects at Level 2 [55]. |
1 | The mean of the within object pixels (at Level 3) of the layer. | |
1 | The mean of the within object pixels (at Level 3) of the layer. | |
(2) | 1 | Similar to (2) Object feature above, but with layer. |
(1) | 1 | The standard deviation of the means of the values within sub-objects at Level 2 [55] (pp. 402–403) or the average of the mean differences of each sub-object to its neighboring objects at Level 2 [55] (pp. 403–404). |
Mean area of sub-obj.(2) | 1 | The mean area of the image objects at Level 1 that fall into the image object in question at Level 3. |
Mean area of sub-obj.(1) | 1 | The mean area of the image objects at Level 2 that fall into the image object in question at Level 3. |
Grab Sample Class | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
M | sM | mS | S | (g)S | gS | G | Row Totals | Accuracy | ||
OBIA-based class | M | 0 | 0 | 0 | 7 | 0 | 0 | 0 | 7 | 0.0% |
sM | 1 | 0 | 1 | 4 | 1 | 0 | 0 | 7 | 0.0% | |
mS | 0 | 0 | 1 | 10 | 0 | 0 | 0 | 11 | 9.0% | |
S | 0 | 1 | 4 | 87 | 2 | 1 | 0 | 95 | 91.6% | |
(g)S | 0 | 0 | 1 | 8 | 2 | 0 | 2 | 13 | 15.4% | |
gS | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 2 | 50.0% | |
G | 0 | 0 | 0 | 6 | 0 | 0 | 0 | 6 | 0% | |
Column totals | 1 | 1 | 7 | 123 | 5 | 2 | 2 | Overall accuracy: | 64.5% |
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Koop, L.; Snellen, M.; Simons, D.G. An Object-Based Image Analysis Approach Using Bathymetry and Bathymetric Derivatives to Classify the Seafloor. Geosciences 2021, 11, 45. https://doi.org/10.3390/geosciences11020045
Koop L, Snellen M, Simons DG. An Object-Based Image Analysis Approach Using Bathymetry and Bathymetric Derivatives to Classify the Seafloor. Geosciences. 2021; 11(2):45. https://doi.org/10.3390/geosciences11020045
Chicago/Turabian StyleKoop, Leo, Mirjam Snellen, and Dick G. Simons. 2021. "An Object-Based Image Analysis Approach Using Bathymetry and Bathymetric Derivatives to Classify the Seafloor" Geosciences 11, no. 2: 45. https://doi.org/10.3390/geosciences11020045
APA StyleKoop, L., Snellen, M., & Simons, D. G. (2021). An Object-Based Image Analysis Approach Using Bathymetry and Bathymetric Derivatives to Classify the Seafloor. Geosciences, 11(2), 45. https://doi.org/10.3390/geosciences11020045