Genome-Wide Association Study of Body Conformation Traits by Whole Genome Sequencing in Dazu Black Goats
Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Ethics Statement
2.2. Animals, Phenotypes, and DNA Extraction
2.3. Whole-Genome Sequencing
2.4. Quality Control
2.5. Population Structure Analysis
2.6. Genome-Wide Association Studies
2.7. Functional Enrichment Analysis
3. Results
3.1. Phenotypic Data Analysis
3.2. Genotypic Data
3.3. Population Structure Analysis
3.4. Genome-Wide Association Study
3.5. GO Enrichment and KEGG Analysis
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| Trait | Max (cm) | Min (cm) | Mean (cm) | Var | Std. Dev | CV |
|---|---|---|---|---|---|---|
| BH | 75.5 | 50.4 | 63.52 | 12.70 | 3.56 | 5.6% |
| BL | 78.5 | 54.3 | 67.27 | 79.16 | 4.38 | 6.5% |
| CC | 10.3 | 6.8 | 8.13 | 0.33 | 0.58 | 7.0% |
| CD | 38.3 | 20.5 | 29.78 | 6.06 | 2.46 | 8.2% |
| CW | 23.9 | 8.2 | 17.13 | 4.68 | 2.16 | 12.0% |
| HG | 99.5 | 68.7 | 81.65 | 29.60 | 5.44 | 6.0% |
| Goat (n) | Raw Bases (Gb) 1 | Reads Mapped to the Reference 1 | Total Reads 1 | Mapping Ratio (%) 1 | Coverage Depth 1 |
|---|---|---|---|---|---|
| 150 | 17.83 | 116 293 649 | 117 573 225 | 99.06 | 6.00 |
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Gu, B.; Sun, R.; Fang, X.; Zhang, J.; Zhao, Z.; Huang, D.; Zhao, Y.; Zhao, Y. Genome-Wide Association Study of Body Conformation Traits by Whole Genome Sequencing in Dazu Black Goats. Animals 2022, 12, 548. https://doi.org/10.3390/ani12050548
Gu B, Sun R, Fang X, Zhang J, Zhao Z, Huang D, Zhao Y, Zhao Y. Genome-Wide Association Study of Body Conformation Traits by Whole Genome Sequencing in Dazu Black Goats. Animals. 2022; 12(5):548. https://doi.org/10.3390/ani12050548
Chicago/Turabian StyleGu, Bowen, Ruifan Sun, Xingqiang Fang, Jipan Zhang, Zhongquan Zhao, Deli Huang, Yuanping Zhao, and Yongju Zhao. 2022. "Genome-Wide Association Study of Body Conformation Traits by Whole Genome Sequencing in Dazu Black Goats" Animals 12, no. 5: 548. https://doi.org/10.3390/ani12050548
APA StyleGu, B., Sun, R., Fang, X., Zhang, J., Zhao, Z., Huang, D., Zhao, Y., & Zhao, Y. (2022). Genome-Wide Association Study of Body Conformation Traits by Whole Genome Sequencing in Dazu Black Goats. Animals, 12(5), 548. https://doi.org/10.3390/ani12050548

