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Microorganisms
Volume 9
Issue 1
10.3390/microorganisms9010175
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Article

Self-Crossing Leads to Weak Co-Variation of the Bacterial and Fungal Communities in the Rice Rhizosphere

by
Jingjing Chang
1,2,
Shaohua Shi
1,
Lei Tian
1,
Marcio F. A. Leite
3,4,
Chunling Chang
1,
Li Ji
1,2,
Lina Ma
1,
Chunjie Tian
1,* and
Eiko E. Kuramae
3,4,*
1
Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
2
University of the Chinese Academy of Sciences, Beijing 100049, China
3
Department of Microbial Ecology, Netherlands Institute of Ecology NIOO-KNAW, 6708 PB Wageningen, The Netherlands
4
Ecology and Biodiversity, Institute of Environmental Biology, Utrecht University, 3584 CH Utrecht, The Netherlands
*
Authors to whom correspondence should be addressed.
Microorganisms 2021, 9(1), 175; https://doi.org/10.3390/microorganisms9010175
Received: 23 December 2020 / Revised: 5 January 2021 / Accepted: 10 January 2021 / Published: 15 January 2021
(This article belongs to the Special Issue Microbial Interactions in Soil)
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Abstract

The rhizomicrobial community is influenced by plant genotype. However, the potential differences in the co-assembly of bacterial and fungal communities between parental lines and different generations of rice progenies have not been examined. Here we compared the bacterial and fungal communities in the rhizomicrobiomes of female parent Oryza rufipogon wild rice; male parent Oryza sativa cultivated rice; their F1 progeny; and the F2, F3 and F4 self-crossing generations. Our results showed that the bacterial and fungal α-diversities of the hybrid F1 and self-crossing generations (F2, F3, F4) were closer to one of the two parental lines, which may indicate a role of the parental line in the diversity of the rhizosphere microbial community assembly. Self-crossing from F1 to F4 led to weak co-variation of the bacterial and fungal communities and distinct rhizosphere microbiomes. In the parental and self-crossing progenies, the reduction of community dissimilarity was higher for the fungal community than for the bacterial community. View Full-Text
Keywords: microbial ecology; Oryza rufipogon; Oryza sativa; co-occurrence microbial ecology; Oryza rufipogon; Oryza sativa; co-occurrence
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This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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MDPI and ACS Style

Chang, J.; Shi, S.; Tian, L.; Leite, M.F.A.; Chang, C.; Ji, L.; Ma, L.; Tian, C.; Kuramae, E.E. Self-Crossing Leads to Weak Co-Variation of the Bacterial and Fungal Communities in the Rice Rhizosphere. Microorganisms 2021, 9, 175. https://doi.org/10.3390/microorganisms9010175

AMA Style

Chang J, Shi S, Tian L, Leite MFA, Chang C, Ji L, Ma L, Tian C, Kuramae EE. Self-Crossing Leads to Weak Co-Variation of the Bacterial and Fungal Communities in the Rice Rhizosphere. Microorganisms. 2021; 9(1):175. https://doi.org/10.3390/microorganisms9010175

Chicago/Turabian Style

Chang, Jingjing, Shaohua Shi, Lei Tian, Marcio F. A. Leite, Chunling Chang, Li Ji, Lina Ma, Chunjie Tian, and Eiko E. Kuramae. 2021. "Self-Crossing Leads to Weak Co-Variation of the Bacterial and Fungal Communities in the Rice Rhizosphere" Microorganisms 9, no. 1: 175. https://doi.org/10.3390/microorganisms9010175

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