Genomic Insights of Dyadobacter tibetensis Y620-1 Isolated from Ice Core Reveal Genomic Features for Succession in Glacier Environment
Abstract
:1. Introduction
2. Materials and Methods
3. Results
3.1. General Features of the Dyadobacter Genomes
3.2. Distribution of Dyadobacter Strains in Their Phylogenomic Tree
3.3. Average Nucleotide and Amino Acid Identity
3.4. Distribution Pattern of Function Genes and Gene Families
3.5. Specific Functions in One-Carbon Metabolism of D. tibetensis Y620-1
4. Discussion
Supplementary Materials
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Strain | Assembly No. | Isolation Sources | Completeness | Contamination | GC | Size (Mbp) | CDS | CRISPRs | rRNAs | tRNAs | CspA | CspG | New Gene Dendity | Coding Density |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D. alkalitolerans DSM 23607 | GCA_000428845.1 | Desert sand | 100.00 | 0.00 | 45.67 | 6.29 | 5496 | 0 | 3 | 35 | 3 | 1 | 0.24 | 0.11 |
D. beijingensis DSM 21582 | GCA_000382205.1 | Soil | 99.69 | 0.30 | 52.08 | 7.38 | 6030 | 0 | 6 | 40 | 4 | 1 | 0.23 | 0.12 |
D. crusticola DSM 16708 | GCA_000701505.1 | Soil | 100.00 | 0.00 | 46.73 | 6.07 | 5141 | 0 | 3 | 40 | 2 | 1 | 0.20 | 0.12 |
D. fermentans DSM 18053 | GCA_000023125.1 | Plant | 99.70 | 0.30 | 51.54 | 6.97 | 5853 | 0 | 12 | 43 | 2 | 1 | 0.22 | 0.12 |
D. jiangsuensis DSM 29057 | GCA_003014695.1 | Soil | 100.00 | 0.60 | 50.26 | 8.27 | 6854 | 0 | 2 | 38 | 2 | 1 | 0.19 | 0.12 |
D. koreensis DSM 19938 | GCA_900108855.1 | Fresh water | 99.70 | 0.89 | 41.26 | 7.34 | 6140 | 0 | 7 | 40 | 1 | 1 | 0.19 | 0.12 |
D. psychrophilus DSM 22270 | GCA_900167945.1 | Soil | 99.70 | 0.30 | 45.05 | 6.74 | 5722 | 0 | 4 | 34 | 2 | 1 | 0.19 | 0.12 |
D. soli DSM 25329 | GCA_900101885.1 | Soil | 99.70 | 0.00 | 50.47 | 8.74 | 7339 | 0 | 6 | 40 | 1 | 1 | 0.17 | 0.12 |
D. tibetensis Y620-1 | GCA_000566685.1 | Ice core | 99.70 | 0.30 | 43.45 | 5.31 | 4275 | 6 | 3 | 37 | 5 | 2 | 0.34 | 0.12 |
Dyadobacter sp. 50-39 | GCA_001898145.1 | Bioreactor | 99.70 | 0.60 | 50.24 | 7.72 | 6563 | 5 | 2 | 40 | 4 | 1 | 0.20 | 0.12 |
Dyadobacter sp. Leaf189 | GCA_001424405.1 | Leaf | 99.70 | 0.60 | 47.00 | 6.07 | 5141 | 0 | 3 | 40 | 3 | 1 | 0.24 | 0.12 |
Dyadobacter sp. SG02 | GCA_900109045.1 | Root | 99.70 | 0.74 | 50.23 | 8.48 | 7043 | 0 | 2 | 38 | 6 | 1 | 0.21 | 0.12 |
Dyadobacter sp. UBA7685 | GCA_002482895.1 | Water | 97.02 | 0.00 | 50.58 | 5.18 | 4436 | 0 | 0 | 30 | 2 | 1 | 0.27 | 0.12 |
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Shen, L.; Liu, Y.; Wang, N.; Adhikari, N.P. Genomic Insights of Dyadobacter tibetensis Y620-1 Isolated from Ice Core Reveal Genomic Features for Succession in Glacier Environment. Microorganisms 2019, 7, 211. https://doi.org/10.3390/microorganisms7070211
Shen L, Liu Y, Wang N, Adhikari NP. Genomic Insights of Dyadobacter tibetensis Y620-1 Isolated from Ice Core Reveal Genomic Features for Succession in Glacier Environment. Microorganisms. 2019; 7(7):211. https://doi.org/10.3390/microorganisms7070211
Chicago/Turabian StyleShen, Liang, Yongqin Liu, Ninglian Wang, and Namita Paudel Adhikari. 2019. "Genomic Insights of Dyadobacter tibetensis Y620-1 Isolated from Ice Core Reveal Genomic Features for Succession in Glacier Environment" Microorganisms 7, no. 7: 211. https://doi.org/10.3390/microorganisms7070211