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Diagnostics 2018, 8(4), 71; https://doi.org/10.3390/diagnostics8040071

Validation of a Novel Modified Aptamer-Based Array Proteomic Platform in Patients with End-Stage Renal Disease

1
Department of Medicine-Nephrology, University of Tennessee Health Science Center, Memphis, TN 38103, USA
2
Department of Medicine, University of California, Irvine, CA 92868, USA
3
Department of Epidemiology, Biostatistics and Medicine, Johns Hopkins Medical Institutions, Baltimore, MD 21287, USA
4
Division of Renal Medicine, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA
5
Johns Hopkins Bloomberg School of Public Health Welch Center for Prevention, Epidemiology, and Clinical Research, Baltimore, MD 21205, USA
6
Nephrology Section, Memphis VA Medical Center, Memphis, TN 38104, USA
*
Author to whom correspondence should be addressed.
Received: 15 August 2018 / Revised: 24 September 2018 / Accepted: 2 October 2018 / Published: 8 October 2018
(This article belongs to the Section Pathology and Molecular Diagnostics)
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Abstract

End stage renal disease (ESRD) is characterized by complex metabolic abnormalities, yet the clinical relevance of specific biomarkers remains unclear. The development of multiplex diagnostic platforms is creating opportunities to develop novel diagnostic and therapeutic approaches. SOMAscan is an innovative multiplex proteomic platform which can measure >1300 proteins. In the present study, we performed SOMAscan analysis of plasma samples and validated the measurements by comparison with selected biomarkers. We compared concentrations of SOMAscan-measured prostate specific antigen (PSA) between males and females, and validated SOMAscan concentrations of fibroblast growth factor 23 (FGF23), FGF receptor 1 (FGFR1), and FGFR4 using Enzyme-Linked immunosorbent assay (ELISA). The median (25th and 75th percentile) SOMAscan PSA level in males and females was 4304.7 (1815.4 to 7259.5) and 547.8 (521.8 to 993.4) relative fluorescence units (p = 0.002), respectively, suggesting biological plausibility. Pearson correlation between SOMAscan and ELISA was high for FGF23 (R = 0.95, p < 0.001) and FGFR4 (R = 0.69, p < 0.001), indicating significant positive correlation, while a weak correlation was found for FGFR1 (R = 0.13, p = 0.16). In conclusion, there is a good to near-perfect correlation between SOMAscan and standard immunoassays for FGF23 and FGFR4, but not for FGFR1. This technology may be useful to simultaneously measure a large number of plasma proteins in ESRD, and identify clinically important prognostic markers to predict outcomes. View Full-Text
Keywords: end-stage renal disease; SOMAscan; validation; biomarker end-stage renal disease; SOMAscan; validation; biomarker
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Han, Z.; Xiao, Z.; Kalantar-Zadeh, K.; Moradi, H.; Shafi, T.; Waikar, S.S.; Quarles, L.D.; Yu, Z.; Tin, A.; Coresh, J.; Kovesdy, C.P. Validation of a Novel Modified Aptamer-Based Array Proteomic Platform in Patients with End-Stage Renal Disease. Diagnostics 2018, 8, 71.

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