Next Article in Journal
Effects of Briquetting and High Pyrolysis Temperature on Hydrolysis Lignin Char Properties and Reactivity in CO-CO2-N2 Conditions
Previous Article in Journal
Grinding Media Motion and Collisions in Different Zones of Stirred Media Mills
 
 
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Article

Natrophosphate, Arctic Mineral and Nuclear Waste Phase: Structure Refinements and Chemical Variability

by
Margarita Avdontceva
1,*,
Sergey Krivovichev
1,2 and
Victor Yakovenchuk
2
1
Department of Crystallography, Institute of Earth Sciences, St. Petersburg State University, University Emb. 7/9, 199034 St. Petersburg, Russia
2
Nanomaterials Research Centre, Kola Science Center, Russian Academy of Sciences, Fersmana Str. 14, 184209 Apatity, Russia
*
Author to whom correspondence should be addressed.
Minerals 2021, 11(2), 186; https://doi.org/10.3390/min11020186
Submission received: 13 January 2021 / Revised: 7 February 2021 / Accepted: 8 February 2021 / Published: 11 February 2021

Abstract

:
The crystal structures of natural (Mt. Koashva, Khibiny alkaline massif, Kola Peninsula, Russian Arctic) and synthetic (obtained from an aqueous solution of sodium phosphate and sodium fluoride (1:1) by evaporation at room temperature (RT)) natrophosphate, Na7(PO4)2F·19H2O, have been investigated using single-crystal X-ray diffraction analysis. Natrophosphate and its synthetic analogue are cubic, Fd-3c, a = 27.6942(3) Å (natrophosphate at RT), a = 27.6241(4) Å (natrophosphate at 100 K), a = 28.1150(12) Å (synthetic analogue at RT), a = 27.9777(7) Å (synthetic analogue at 100 K). The crystal structure is based upon the super-octahedral [Na6(H2O)18F]5+ polycationic complexes consisting of six edge-linked Na6(OH2)5F octahedra sharing one common fluorine vertex. The A site is statistically occupied by Na and H2O with the prevalence of H2O with the refined occupancy factors O:Na equal to 0.53:0.47 for natrophosphate and 0.75:0.25 for its synthetic analogue. The coordination of the A site in synthetic natrophosphate is enlarged compared to the natural sample, which agrees well with its higher occupancy by H2O molecules. The general formula of natrophosphates can be written as Na6+xHxF(PO4)2·(19 + x)H2O, where x = 0–1. The chemical variability of natrophosphate allows to explain the discrepancies in its solubility reported by different authors. The information-based parameters of structural complexity are equal to 3.713 bit/atom and 2109.177 bit/cell that allows to classify natrophosphate as a structurally very complex mineral.

1. Introduction

The history of the study of the phase with the chemical formula Na7(PO4)2F⋅19H2O is almost 165 years old. It was first described in 1856 by H. Briegleb [1] as transparent octahedral crystals with the composition NaF⋅Na3PO4⋅12H2O. Independently this compound was obtained in the course of soda production by means of the Leblanc process (later replaced by the Solvay process) and was studied in 1865 by Rammelsberg [2], who erroneously assigned to it the chemical formula Na3PO4⋅20H2O, which was soon corrected by Baumgarten to NaF⋅2Na3PO4⋅19H2O [3]. The later composition was confirmed by Thorpe [4] and Baker [5]. In 1933, Neuman [6] reported the results of his single-crystal diffraction study to demonstrate that the compound crystallizes in the space group Fd-3c (in modern notation), a = 27.86 Å. Guiot [7] confirmed these data, whereas Rémy and Guérin [8] proposed the existence of a series of compounds with the general formula M3XO4xMY⋅(10 – x)H2O where M = Na, K; X = P, As, V; Y = F, OH, and 0 ≤ x ≤ 2. These authors determined for these compounds the space group Fd-3c and the unit-cell parameters equal to 28.14 Å for [M,X,Y,x] = [Na,As,F,0.5], 28.22 Å for [Na,V,F,0.5], and 28.23 Å for [Na,As,OH,0.5]. The crystal structures of Na7(AsO4)2F⋅19H2O ([Na,As,F,0.5], a = 28.12 Å) and Na7(PO4)2F⋅19H2O ([Na,P,F,0.5], a = 27.755 Å) were determined by Baur and Tillmanns [9,10].
The natural analogue of Na7(PO4)2F⋅19H2O was reported by Kapustin et al. [11] from pegmatite of Yukspor Mt., Khibiny alkaline massif, Kola peninsula (Russian Arctic). The mineral was named ‘natrophosphate’; its wet chemical analyses revealed considerable deviations from the formula Na7(PO4)2F⋅19H2O with the deficiency of Na that allowed the authors to suggest Na6H(PO4)2F⋅17H2O as an alternative composition. Khomyakov and Bykova [12] reported the occurrence of natrophosphate in the Lovozero alkaline massif, Kola peninsula, Russia, and determined its chemical formula as Na6.94(PO4)2F1.11⋅18.8H2O. The mineral was also reported from phonolites of the Aris area (Namibia) [13], Ilimaussaq alkaline complex (South Greenland) [14], and Mont-Saint-Hilaire alkaline massif (Canada) [15,16]. The chemical composition of the Aris natrophosphate corresponded to Na7.04((PO4)1.87(SO4)0.09)Σ=1.96(F1.28Cl0.39)Σ=1.67·19.29H2O; the cubic unit cell with a = 27.93(5) Å was determined [13]. Genkina and Khomyakov [17] refined the crystal structure of the Lovozero natrophosphate and found its good agreement with the structure model reported by Baur and Tillmanns [10]; the a unit-cell parameter was determined to be equal to 27.712(2) Å.
Recently, the interest in natrophosphate has been renewed due to its findings as one of the major salts in alkaline nuclear wastes such as those stored at the Hanford site, near Richland, WA, USA [18,19,20,21]. The occurrence of this phase considerably complicates the waste processing, which necessitates detailed studies of its composition and solubility. Previous investigations of the Na3PO4–NaF–H2O system revealed the absence of agreement between different studies [22,23,24] on the composition of precipitates and equilibrium concentrations as summarized by Felmy and MacLean [25]. Herting and Reynolds [20] re-investigated the composition of synthetic natrophosphate ‘is approximately the same as the composition first reported more than 140 years ago’ (the authors mean the Thorpe’s report published in 1872 [4], which ‘resolves the long-standing controversy in the literature concerning the composition of natrophosphate’. Herein we provide a crystal-structure evidence that the problem is still far from being completely resolved and that natrophosphate may in fact have a variable composition that explains the data discrepancies observed in the previous studies [22,23,24].

2. Materials and Methods

The sample of natural natrophosphate was taken from the collection of the third author and was found in the central part of the Koashvinskii quarry in a microcline-pectolite-sodalite-aegirine vein in urtites, Kola peninsula, Russia (Figure 1). This vein is traced to the depth of 80 m. Natrophosphate was found as aggregates of transparent cubooctahedral crystals up to 1 cm in diameter (Figure 2). Association includes fibrous aegirine, delhayelite, fluorapatite, natrolite and pectolite.
The composition of natrophosphate [26] was determined using a Cameca MS-46 electron probe micro-analyzer as Na6.94F1.11(PO3.96)2·18.17H2O and is in a good agreement with the generally accepted formula. Quantification of elemental compositions was conducted using standard samples of natural and synthetic compounds (lorenzenite(Na), fluorapatite (P) and fluorite (F)).
The Raman spectrum of natural natrophosphate was obtained by means of the Horiba Jobin-Yvon LabRam HR800 spectrometer using Ar+ laser with λ = 532 nm (Figure 3). The high-intensity band at 3362 cm−1 corresponds to OH-stretching region and the bands at 935 cm−11), 545 cm−14) and 412 cm−12) are related with PO43− vibrations. The lattice mode corresponds to the band at 181 cm−1 [27].
In order to prepare synthetic natrophosphate, trisodium phosphate (0.1639 g) and sodium fluoride (0.0420 g) were mixed and dissolved in 10 mL of distilled water. The resulting aqueous solution was placed into a watch glass for further evaporation at room temperature. The crystallization started in about 12 h and after 24 h crystals of synthetic natrophosphate were obtained. Synthetic natrophosphate forms colorless, transparent cubooctahedral crystals up to 5 mm in size.
The determination of the exact chemical composition is generally challenging, due to its extreme instability in air and solubility in water. In addition, Na migrates under electron beam, so the electron microprobe analysis of natrophosphate does not provide completely unambiguous results. In an attempt to avoid these problems, the crystal structures of natural and synthetic natrophosphates were refined by means of the X-ray diffraction single-crystal analysis that allowed to refine occupancies of the key structural sites.
For the single-crystal X-ray diffraction experiment, the suitable crystals of natrophosphate and its synthetic analogue were fixed on a micro mount and placed on an Agilent Technologies Excalibur Eos (MoKα radiation) and Agilent Technologies Supernova Atlas (CuKα radiation) diffractometers. The samples were kept at room temperature and at 100 K. The Oxford Cryosystems Cryostream was used for low-temperature measurements. The unit cell parameters were refined by least square technique. The structures have been solved by the direct methods and by means of the SHELXL–97 program [28] incorporated in the OLEX2 program package [29] to R1 = 0.043 (natrophosphate at room temperature), R1 = 0.028 (natrophosphate at 100 K), R1 = 0.044 (synthetic analogue at room temperature), R1 = 0.043 (synthetic analogue at 100 K). Empirical absorption correction was applied in CrysAlisPro [30] program complex using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. In the course of the crystal-structure refinement, the site occupancy of the A site was determined at 100 K using mixed O-Na site-scattering curve and fixed at the obtained value for the room-temperature refinement in order to avoid the problem of correlation between displacement parameters and site occupancies. The crystallographic data and structure refinement details are given in Table 1, the final atomic coordinates, anisotropic displacement, site occupancies and BVS (bond-valence sum) parameters are given in Table 2, selected interatomic distances are provided in Table 3. Crystallographic Information Files (CIFs) for the four structures are shown in Supplementary Materials.

3. Results

In agreement with the previous studies [9,10,17], the crystal structure of natrophosphate is based upon the super-octahedral [Na6(H2O)18F]5+ polycationic complexes consisting of six edge-linked Na6(OH2)5F octahedra sharing one common fluorine vertex so the F atom is at the center of an octahedron formed by six Na atoms (Figure 4). The Na1 site is fully occupied and the <Na1–Ow> bond lengths vary from 2.349 to 2.478 Å for natrophosphate and from 2.352 to 2.421 Å for its synthetic analogue at room temperature. The <Na1–F> bond lengths in the anion-centered octahedra (FNa6) range from 2.383 (natrophosphate at 100 K) to 2.421 Å (synthetic analogue at room temperature). Two symmetrically independent P sites are tetrahedrally coordinated by O1 and O2 atoms, respectively. The O1 site is disordered around a threefold axis with the occupancy factor of 0.33.
The A site is statistically occupied by Na and H2O with the prevalence of H2O with the refined occupancy factors O:Na equal to 0.53:0.47 for natrophosphate and 0.75:0.25 for its synthetic analogue. The almost equal occupancy of the A site by Na and H2O in natrophosphate is in perfect agreement with the previous structure reports [10,17], where the 0.50:0.50 occupancy was assumed. The A site is in tetrahedral coordination by three Ow5 and one O1 atoms. The A–O bond lengths for natrophosphate are in good agreement with previous structure reports. In particular, Baur and Tillmanns [10] reported for the A site the A–O1 and A–Ow5 bond lengths of 2.41(1) and 2.512(4) Å, respectively, in accord with the values of 2.376(1) and 2.465(1) Å obtained in this study (room-temperature data). In contrast, the A–O1 and A–Ow5 bond lengths for the synthetic natrophosphate prepared by us are significantly higher, 2.605(1) and 2.676(1) Å, respectively (Figure 5). The enlarged coordination of the A site in the synthetic sample agrees well with its higher occupancy by H2O molecules compared to the natural sample. It seems that there exists a correlation between the site occupancy of the A site and the average <A–O> bond length. The deficiency of Na at the A site in synthetic material raises the charge-balance problem, which is discussed in details below.
In order to refine the hydrogen atom positions, the samples of natrophosphate and its synthetic analogue were studied at 100 K. The room-temperature refinement of natrophosphate allowed to locate four hydrogen atom positions around the Ow3 and Ow4 sites with fixed bond lengths. Seven hydrogen positions where refined for the Ow3, Ow4 and Ow5 sites in the synthetic analogue, where H5 split into H5A, H5B and H5C with the occupancy factors of 2/3 and with fixed isotropic displacement parameter for the H4C site. The low-temperature refinement made it possible to locate seven hydrogen atom positions for both samples. The H positions around the Ow5 site are disordered with the occupancy factors of 2/3 for natrophosphate and 0.65, 0.60 and 0.75 for the synthetic analogue. The Ow5–H bond lengths and the H5B isotropic displacement parameters are fixed for natrophosphate. The hydrogen atom coordinates and isotropic displacement parameters for samples at 100 K are given in Table 4 and Table 5. The hydrogen bonding networks can be described on the basis of H-atom positions located at 100 K and calculation of bond-valence sums (BVS) for oxygen atoms [11] (Table 6 and Table 7). The O1 atom acts as an acceptor of hydrogen bonds donated by the H2O4, H2O3 and H2O5 molecules with the OH distance ranging from 1.874 to 2.192 Å for 100 K. The hydrogen-bond networks description is in a good agreement with data obtaining by previous studies for synthetic analogue of natrophosphate where H-positions were taken from the difference synthesis without further refinement.

4. Discussion

The key issue observed in the current study is the variable occupancy of the A site by Na and H2O molecules that agrees well with the range of the A–O distances obtained from the crystal-structure study. The enlarged AO4 coordination polyhedron corresponds to its higher occupancy by H2O molecules. The enlargement of the polyhedron also explains well the values of the a unit-cell parameter that increases from 27.694 for natrophosphate to 28.115 Å for its synthetic analogue, i.e., by ca. 1.5%.
The Na deficiency at the A site requires a mechanism for the charge-balance compensation. Following Kapustin et al. [11], we believe that the most reasonable explanation is the incorporation of additional H atoms into the structure through the protonation of particular anionic sites. There are only two possible O sites prone to the protonation reaction: O sites of the phosphate groups and H2O molecules. Protonation of the former sites results in the formation of acid phosphate groups, (HPO4)2-, whereas protonation of the latter produces hydronium ions, (H3O)+. In our opinion, the first scenario is more realistic. Khomyakov and Menshikov [32] observed that alteration of natrophosphate under natural conditions is associated with the formation of nahpoite, Na2HPO4 = Na2(PO3OH), and dorfmanite, Na2HPO4·2H2O = Na2(PO3OH)·2H2O, that both contain acid phosphate groups. However, the issue requires further investigation; in order to avoid the final decision, the chemical formulas for the natural and synthetic natrophosphate studied here can be written as Na6.94H0.06F(PO4)2·19.06H2O and Na6.75H0.25F(PO4)2·19.25H2O, respectively. The general formula of natrophosphates can therefore be written as Na6+xHxF(PO4)2·(19 + x)H2O, where x = 0–1.
The chemical variability of natrophosphate allows to explain the discrepancies in its solubility reported by different authors [22,23,24,25]. The results of the solubility measurements may be influenced by the different chemical nature of the investigated sample that has to be taken into account in the course of thermodynamic modeling.
From the structural point of view, natrophosphate belongs to the family of minerals containing polyoxometalate clusters as recently reviewed in [33]. The presence of the (FNa6)5+ units at the core of the clusters allows to suggest that the mineral may serve as a precursor for the formation of antiperovskite structure motifs based upon anion-centered octahedra [34]. The polyoxometalate character of its structure defines its high structural complexity: the information-based parameters [35,36] are equal to 3.713 bit/atom and 2109.177 bit/cell that allows to classify natrophosphate as a structurally very complex mineral. Its complexity is most likely the result of the presence of the super-octahedral [Na6(H2O)18F]5+ polycationic complexes in the aqueous solutions, from which the mineral and its synthetic analogue crystallize. One may hypothesize on the possibility of formation of larger polynuclear hydrated Na-F clusters that can be viewed as parts of the NaF structure [37].

Supplementary Materials

The following are available online at https://www.mdpi.com/2075-163X/11/2/186/s1, Crystallographic Information Files (CIFs) for the four structures of natrophosphate.

Author Contributions

Conceptualization, S.K.; methodology, S.K., M.A. and V.Y.; validation, S.K. and M.A.; formal analysis, S.K. and M.A.; investigation, M.A. and V.Y.; resources, S.K.; writing—original draft preparation, M.A.; writing—review and editing, S.K.; visualization, S.K. and V.Y.; supervision, project administration and funding acquisition, S.K. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the Russian Science Foundation, grant number 19-17-00038.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

Not applicable.

Acknowledgments

The X-ray diffraction studies have been performed in the X-ray Diffraction Resource Centre and Centre for Geo-Environmental Research and Modelling of St. Petersburg State University.

Conflicts of Interest

The authors declare no conflict of interest.

References

  1. Briegleb, H. Ueber die Einwirkung des phosphorsauren Natrons auf Flufsspath in der Glühhitze. Liebigs Ann. 1856, 97, 95–119. [Google Scholar] [CrossRef]
  2. Rammelsberg, C. Ueber ein neues Natronphosphat und das Vorkommen von Vanadin in Sodalaugen. Z. Chem. 1865, 8, 518–519. [Google Scholar]
  3. Baumgarten, A. Ueber das Vorkommen des Vanadium’s in dem Aetznatron des Handels. Z. Chem. 1865, 8, 605–608. [Google Scholar]
  4. Thorpe, T.E. On a remarkable salt deposited from the mother-liquors obtained in the manufacture of soda. J. Chem. Soc. 1872, 25, 660–661. [Google Scholar] [CrossRef] [Green Version]
  5. Baker, H. XXXVI—The ortho-vanadates of sodium and their analogues. J. Chem. Soc. 1885, 47, 353–361. [Google Scholar] [CrossRef] [Green Version]
  6. Neuman, E.W. Röntgenographische Untersuchung an Natriumfluorphosphat. Z. Kristallogr. 1933, 86, 298–300. [Google Scholar]
  7. Guiot, J.C. The system H2O, Na+, F, PO4−3. Rev. Chim. Miner. 1967, 4, 85–128. [Google Scholar]
  8. Rémy, F.; Guérin, H. Radiocrystallographic study of dodecahydrate trisodium arsenate and vanadate Na3AsO4·12H2O and Na3VO4·12H2O, and some hydrates of fluorinated or hydroxylated salts of general formula: M3XO4·xMY·(10-x)H2O where M = Na, K; X = P, As, V and Y = F, OH. Bull. Soc. Chim. Fr. 1970, 6, 2073–2078. [Google Scholar]
  9. Tillmanns, E.; Baur, W.H. A new type of polycation in heptasodiumfluoridebisarsenate-19-hydrate. Naturwiss 1970, 57, 242. [Google Scholar] [CrossRef]
  10. Baur, H.; Tillmanns, E. The crystal structure determination of heptasodium fluoride biphosphate 19-hydrate and the computer simulation of the isomorphous vanadate salt. Acta Crystallogr. 1974, 30, 2218–2224. [Google Scholar] [CrossRef]
  11. Kapustin, Y.L.; Bykova, A.V.; Bukin, V.I. Natrophosphate, a new mineral. Intern. Geol. Rev. 1972, 14, 984–989. [Google Scholar] [CrossRef]
  12. Khomyakov, A.P.; Bykova, A.V. Natrophosphate—The first occurrence in the Lovozero alkalic massif. Miner. Ogicheskiy Zhurnal 1980, 139, 88–91. [Google Scholar]
  13. Petersen, O.V.; Fockenberg, T.; Toft, P.C.; Rattay, M. Natrophosphate from the Aris phonolites, Windhoek, Namibia. Neues Jahrb. Mineral. Monatshefte 1997, 11, 511–517. [Google Scholar] [CrossRef]
  14. Petersen, O.V.; Khomyakov, A.P.; Sorensen, H. Natrophosphate from the Ilimaussaq alkaline complex, South Greenland. Geol. Greenl. Survey Bull. 2001, 190, 139–141. [Google Scholar] [CrossRef]
  15. Chao, G.Y.; Grice, J.D.; Gault, R.A. Silinaite, a new sodium lithium silicate hydrate mineral from Mont Saint-Hilaire, Quebec. Can. Mineral. 1991, 29, 359–362. [Google Scholar]
  16. Chao, G.Y.; Ercit, T.S. Nalipoite, sodium dilithium phosphate, a new mineral species from Mont Saint-Hilaire, Quebec. Can. Mineral. 1991, 29, 565–568. [Google Scholar]
  17. Genkina, E.A.; Khomyakov, A.P.; Wester, D. Refinement of the crystal structure of natural natrophosphate. Sov. Phys. Cryst. 1992, 37, 844–845. [Google Scholar]
  18. Reynolds, J.G.; Cooke, G.A.; Herting, D.L.; Warrant, R.W. Salt mineralogy of Hanford high-level nuclear waste staged for treatment. Ind. Eng. Chem. Res. 2013, 52, 9741–9751. [Google Scholar] [CrossRef]
  19. Reynolds, J.G.; Huber, H.J.; Cooke, G.A.; Pestovich, J.A. Solid-Phase zirconium and fluoride species in alkaline zircaloy cladding waste at Hanford. J. Hazard. Mater. 2014, 278203–278210. [Google Scholar] [CrossRef]
  20. Herting, D.L.; Reynolds, J.G. The composition of natrophosphate (sodium fluoride phosphate hydrate). Environ. Chem. Lett. 2016, 14, 401–405. [Google Scholar] [CrossRef]
  21. Bolling, S.D.; Reynolds, J.G.; Ely, T.M.; Lachut, J.S.; Lamothe, M.E.; Cooke, G.A. Natrophosphate and kogarkoite precipitated from alkaline nuclear waste at Hanford. J. Radioanal. Nucl. Chem. 2020, 323, 329–339. [Google Scholar] [CrossRef]
  22. Mason, C.W.; Ashcraft, E.B. Trisodium phosphate–sodium fluoride. Ind. Eng. Chem. 1939, 31, 768–774. [Google Scholar] [CrossRef]
  23. Roslyakova, O.N.; Petrov, M.R.; Zhikharev, M.I. The NaF-Na3PO4-H2O system at 25 °C. Russ. J. Inorg. Chem. 1979, 24, 115–116. [Google Scholar]
  24. Weber, C.F.; Beahm, E.C.; Lee, D.D.; Watson, J.S. A solubility model for aqueous solutions containing sodium, fluoride, and phosphate ions. Ind. Eng. Chem. Res. 2000, 39, 518–526. [Google Scholar] [CrossRef]
  25. Felmy, A.R.; MacLean, G.T. Development of an Enhanced Thermodynamic Database for the Pitzer Model in ESP: The Fluoride and Phosphate Components; Battelle Pacific Northwest Division: Richland, DC, USA, 2003. [Google Scholar]
  26. Yakovenchuk, V.N.; Ivanyuk, G.Y.; Pakhomovsky, Y.A.; Men’shikov, Y.P. Khibiny; Laplandia Minerals: Apatity, Russia, 2005. [Google Scholar]
  27. Frezzotti, M.L.; Tecce, F.; Casagli, A. Raman spectroscopy for fluid inclusion analysis. J. Geochem. Explor. 2012, 112, 1–20. [Google Scholar] [CrossRef]
  28. Sheldrick, G.M. Crystal structure refinement with SHELXL. Acta Crystallogr. 2015, 71, 3–8. [Google Scholar]
  29. Dolomanov, O.V.; Bourhis, L.J.; Gildea, R.J.; Howard, J.A.K.; Puschmann, H. Olex2: A complete structure solution, refinement and analysis program. J. Appl. Crystallogr. 2009, 42, 339–341. [Google Scholar] [CrossRef]
  30. Agilent Technologies. CrysAlisPro, Version 1.171.36.20; Agilent Technologies: Santa Clara, CA, USA, 2012. [Google Scholar]
  31. Brese, N.E.; O’Keeffe, M. Bond-Valence parameters for solids. Acta Crystallogr. 1991, 47, 192–197. [Google Scholar] [CrossRef]
  32. Khomyakov, A.P.; Men’shikov, Y.P. Identification of sodium phosphate (Na2HPO4) and sodium phosphate dihydrate (Na2HPO4·2H2O) in products of natural natrophosphate alteration. Dokl. Akad. Nauk SSSR 1979, 248, 1207–1211. [Google Scholar]
  33. Krivovichev, S.V. Polyoxometalate clusters in minerals: Review and complexity analysis. Acta Crystallogr. 2020, 76, 618–629. [Google Scholar] [CrossRef] [PubMed]
  34. Krivovichev, S.V. Minerals with antiperovskite structure: A review. Z. Kristallogr. 2008, 223, 109–113. [Google Scholar] [CrossRef]
  35. Krivovichev, S.V. Topological complexity of crystal structures: Quantative approach. Acta Crystallogr. 2012, 68, 392–398. [Google Scholar] [CrossRef] [PubMed]
  36. Krivovichev, S.V. Structural complexity of minerals: Information storage and processing in the mineral world. Miner. Mag. 2013, 77, 277–326. [Google Scholar] [CrossRef]
  37. Miller, T.M.; Lineberger, W.C. Mass spectra and photodetachment of sodium fluoride negative ion clusters. Int. J. Mass Spectr. Ion Proc. 1990, 102, 239–249. [Google Scholar] [CrossRef]
Figure 1. Koashvinskii quarry (locality of natrophosphate marked by the star).
Figure 1. Koashvinskii quarry (locality of natrophosphate marked by the star).
Minerals 11 00186 g001
Figure 2. Aggregates of natrophosphate crystals from Mt. Koashva, Kola peninsula, Russia: (a) microphoto (field of view = 1.8 × 2 cm2); (b) scanning electron microscopy (SEM) image (field of view = 1.1 × 1.2 mm2).
Figure 2. Aggregates of natrophosphate crystals from Mt. Koashva, Kola peninsula, Russia: (a) microphoto (field of view = 1.8 × 2 cm2); (b) scanning electron microscopy (SEM) image (field of view = 1.1 × 1.2 mm2).
Minerals 11 00186 g002
Figure 3. Raman spectrum of natural natrophosphate.
Figure 3. Raman spectrum of natural natrophosphate.
Minerals 11 00186 g003
Figure 4. The super-octahedral [Na6(H2O)18F]5+ polycationic cluster in the crystal structure of natrophosphate: (a) ball-and-stick representation; (b) representation in terms of (NaF6) octahedra (shown in yellow). Legend: Na, F, O and H atoms are shown as yellow, green, red and black spheres, respectively.
Figure 4. The super-octahedral [Na6(H2O)18F]5+ polycationic cluster in the crystal structure of natrophosphate: (a) ball-and-stick representation; (b) representation in terms of (NaF6) octahedra (shown in yellow). Legend: Na, F, O and H atoms are shown as yellow, green, red and black spheres, respectively.
Minerals 11 00186 g004
Figure 5. Coordination of the A site in natural (a) and synthetic (b) natrophosphate at room temperature. Legend as in Figure 4. The interatomic distances are given in Å.
Figure 5. Coordination of the A site in natural (a) and synthetic (b) natrophosphate at room temperature. Legend as in Figure 4. The interatomic distances are given in Å.
Minerals 11 00186 g005
Table 1. Crystal data and refinement parameters for natrophosphate (1—room temperature (RT), 2—100 K) and its synthetic analogue (3—RT, 4—100 K).
Table 1. Crystal data and refinement parameters for natrophosphate (1—room temperature (RT), 2—100 K) and its synthetic analogue (3—RT, 4—100 K).
Sample1234
Crystal systemcubic
Space groupFd-3c
Temperature (K)293100293100
a (Å)27.6942(3)27.6241(4)28.1150(12)27.9777(7)
V3)21,240.7(6)21,079.7(10)22,224(3)21,899.6(2)
Z32323232
Formula weight697.63709.70708.63706.60
pcalc(g/cm3)1.7451.7891.6901.715
μ/mm−10.3873.7073.4633.514
F(000)11,386.011,770.011,728.011,714.0
RadiationMoKαCuKαCuKαCuKα
2θ range (deg)5.096–58.5229.054–152.4168.896–144.7388.94–152.566
Index ranges−37 ≤ h ≤ 30, −32 ≤ k ≤ 37, −37 ≤ l ≤ 35−33 ≤ h ≤ 32, −33 ≤ k ≤ 27, −34 ≤ l ≤ 3423 ≤ h ≤ 33, −26 ≤ k ≤ 24, −14 ≤ l ≤ 33−34 ≤ h ≤ 24, −17 ≤ k ≤ 33, −24 ≤ l ≤ 28
Reflections collected25,87314,85389515164
Independent reflections1176 [Rint = 0.030, Rsigma = 0.010]935 [Rint = 0.044, Rsigma = 0.013]890 [Rint = 0.039, Rsigma = 0.023]939 [Rint = 0.042, Rsigma = 0.026]
Data/restrains/parameters1177/4/79935/3/91890/7/90939/0/92
Goodness-of-fit on F21.1061.1311.1181.122
Final R-indexes (I > 2σ(I))R1 = 0.043, wR2 = 0.130R1 = 0.028, wR2 = 0.070R1 = 0.044, wR2 = 0.109R1 = 0.043, wR2 = 0.106
Final R-indexes (all data)R1 = 0.051, wR2 = 0.137R1 = 0.032, wR2 = 0.073R1 = 0.062, wR2 = 0.123R1 = 0.050, wR2 = 0.110
Largest diffraction peak/hole e Å−30.58/−0.280.31/−0.400.22/−0.330.44/−0.31
Table 2. Atomic coordinates, equivalent isotropic displacement parameters (Å2), occupancies (Occ) and BVS (bond-valence sum) parameters for natrophosphate (1—RT, 2—100 K) and its synthetic analogue (3—RT, 4—100 K).
Table 2. Atomic coordinates, equivalent isotropic displacement parameters (Å2), occupancies (Occ) and BVS (bond-valence sum) parameters for natrophosphate (1—RT, 2—100 K) and its synthetic analogue (3—RT, 4—100 K).
Atom 1234
Na1x0.6654(1)0.6657(3)0.6659(1)0.6662(2)
y0.2623(1)0.2622(3)0.2629(1)0.2631(1)
z0.0133(1)0.0136(1)0.0136(1)0.0141(1)
Ueq0.0291(3)0.015(1)0.044(1)0.018(3)
OccNaNaNaNa
BVS *1.171.211.141.18
P1x5/85/85/85/8
y1/81/81/81/8
z1/81/81/81/8
Ueq0.021(1)0.009(1)0.039(1)0.018(1)
OccPPPP
BVS *4.934.974.975.06
P2x5/85/85/85/8
y3/83/83/83/8
z1/81/81/81/8
Ueq0.016(1)0.008(1)0.033(1)0.015(1)
OccPPPP
BVS *4.724.674.724.68
O1x0.6110(2)0.6102(1)0.6153(3)0.6142(1)
y0.1708(2)0.1706(1)0.1726(3)0.1726(2)
z0.0986(2)0.0975(1)0.1011(4)0.1013(3)
Ueq0.047(1)0.030(3)0.075(3)0.047(2)
Occ1/3O1/3O1/3O1/3O
BVS *1.231.241.241.26
O2x0.6143(1)0.6146(1)0.6146(1)0.6150(1)
y0.4072(1)0.4073(1)0.4064(1)0.4066(1)
z0.1692(1)0.1695(1)0.1687(1)0.1692(1)
Ueq0.025(1)0.012(1)0.042(1)0.017(1)
OccOOOO
BVS *1.181.171.181.17
Ow3x0.6781(1)0.6782(1)0.6787(1)0.6789(1)
y0.2474(1)0.2470(1)0.2474(1)0.2468(1)
z0.0966(6)0.0967(1)0.0955(1)0.0960(1)
Ueq0.033(1)0.016(1)0.050(1)0.023(1)
OccOOOO
BVS *0.430.440.410.42
Ow4x0.6795(1)0.6795(1)0.6809(1)0.6815(1)
y0.3467(1)0.3464(1)0.3471(1)0.3471(1)
z0.0108(1)0.0109(1)0.0106(1)0.0108(1)
Ueq0.029(1)0.014(1)0.046(1)0.020(1)
OccOOOO
BVS *0.440.450.420.43
Ow5x0.5816(1)0.5830(1)0.5862(1)0.5871(1)
y0.2832(1)0.2844(1)0.2892(1)0.2897(1)
z0.0363(1)0.0354(1)0.0353(1)0.0347(1)
Ueq0.059(1)0.043(1)0.054(1)0.022(1)
OccOOOO
BVS*0.160.170.180.19
Ax0.5485(1)0.5475(1)0.5468(1)0.5451(1)
y0.2015(1)0.2025(1)0.2032(1)0.2048(1)
z0.0485(1)0.0475(1)0.0467(1)0.0451(1)
Ueq0.053(1)0.029(2)0.071(2)0.031(1)
Occ0.53O + 0.47Na0.53O + 0.47Na0.75O + 0.25Na0.75O + 0.25Na
Fx¾¾¾¾
y¼¼¼¼
z0000
Ueq0.021(1)0.009(1)0.036(1)0.016(1)
OccFFFF
BVS *0.860.891.120.84
* Calculated using bond-valence parameters derived by Brese and O’Keeffe [31].
Table 3. Selected bond lengths (Å) in the crystal structures of natrophosphate (1—room temperature, 2—100 K) and its synthetic analogue (3—room temperature, 4—100 K).
Table 3. Selected bond lengths (Å) in the crystal structures of natrophosphate (1—room temperature, 2—100 K) and its synthetic analogue (3—room temperature, 4—100 K).
Bond Length1234
Na1–Ow42.349(2)2.346(2)2.405(3)2.392(2)
Na1–Ow42.371(2)2.367(2)2.352(3)2.342(2)
Na1–Ow32.373(2)2.364(2)2.412(2)2.398(2)
Na1–Ow32.371(2)2.361(2)2.370(3)2.363(2)
Na1–Ow52.478(2)2.441(2)2.438(3)2.406(2)
Na1–F2.395(1)2.383(1)2.421(1)2.405(1)
<Na1–O,F>2.3902.3772.3992.384
P1–O11.516(5)(12x)1.528(3)(12x)1.524(6)(12x)1.517(6)(12x)
<P1–O>1.5271.5281.5241.517
P2–O21.543(1)(4x)1.547(1)(4x)1.543(2)(4x)1.546(2)(4x)
<P2–O>1.5431.5471.5431.546
F–Na12.395(1)(6x)2.383(1)(6x)2.421(1)(6x)2.405(1)(6x)
<F–Na>2.3952.3832.4212.405
A–Ow52.465(1)(3x)2.487(1)(3x)2.676(1)(3x)2.667(1)(3x)
A–O12.376(1)2.384(1)2.6052.649
<A–O>2.4422.4612.6582.663
Table 4. Hydrogen atoms coordinates, occupancies (Occ) and displacement isotropic parameters (Å2) for natrophosphate at 100 K.
Table 4. Hydrogen atoms coordinates, occupancies (Occ) and displacement isotropic parameters (Å2) for natrophosphate at 100 K.
AtomOccxyzUeq
H3A10.6700(9)0.2717(9)0.1107(9)0.034(7)
H3B10.6628(1)0.2241(1)0.1117(1)0.052(8)
H4A10.6693(9)0.3589(9)−0.0163(9)0.030(6)
H4B10.6669(9)0.3641(9)0.0324(1)0.033(6)
H5A0.66670.585(1)0.3051(9)0.578(9)0.012(7)
H5B0.66670.562(1)0.270(2)0.502(14)0.050
H5C0.66670.572(2)0.301(1)0.135(13)0.05(1)
Table 5. Hydrogen atoms coordinates, occupancies (Occ) and displacement isotropic parameters (Å2) for synthetic analogue of natrophosphate at 100 K.
Table 5. Hydrogen atoms coordinates, occupancies (Occ) and displacement isotropic parameters (Å2) for synthetic analogue of natrophosphate at 100 K.
AtomOccxyzUeq
H3A10.671(1)0.269(1)0.112(1)0.030(1)
H3B10.666(2)0.225(2)0.113(2)0.07(2)
H4A10.669(1)0.362(1)0.031(1)0.028(9)
H4B10.674(1)0.358(1)−0.014(1)0.030(1)
H5A0.750.587(1)0.306(2)0.600(2)0.02(1)
H5B0.650.575(2)0.260(2)0.042(2)0.01(1)
H5C0.600.574(2)0.307(2)0.019(2)0.01(1)
Table 6. Hydrogen bonding geometry (Å, °) for natrophosphate (D = donor; A = acceptor).
Table 6. Hydrogen bonding geometry (Å, °) for natrophosphate (D = donor; A = acceptor).
D–Hd(D–H)d(HA)<DHAd(DA)A
O–H3A0.8142.075161.152.858O2
O–H3B0.8692.107139.522.852O1
O–H3B0.8692.135143.072.877O1
O–H3B0.8691.963168.892.821O1
O–H4A0.8721.946170.752.810O2
O–H4B0.8391.987177.142.826O2
O–H5A0.8461.884167.572.717O2
O–H5B0.8011.921127.062.487O6
O–H5C0.8091.926170.342.726O5
Table 7. Hydrogen bonding geometry (Å, °) for synthetic natrophosphate.
Table 7. Hydrogen bonding geometry (Å, °) for synthetic natrophosphate.
D–Hd(D–H)d(HA)<DHAd(DA)A
O–H3A0.7822.192156.342.925O2
O–H3B0.8492.101134.382.762O1
O–H3B0.8491.972175.312.819O1
O–H3B0.8492.248143.052.970O1
O–H4A0.8062.076173.962.879O2
O–H4B0.7932.070175.832.862O2
O–H5B0.8331.874174.372.705O2
O–H5C0.7411.980164.772.702O5
Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Share and Cite

MDPI and ACS Style

Avdontceva, M.; Krivovichev, S.; Yakovenchuk, V. Natrophosphate, Arctic Mineral and Nuclear Waste Phase: Structure Refinements and Chemical Variability. Minerals 2021, 11, 186. https://doi.org/10.3390/min11020186

AMA Style

Avdontceva M, Krivovichev S, Yakovenchuk V. Natrophosphate, Arctic Mineral and Nuclear Waste Phase: Structure Refinements and Chemical Variability. Minerals. 2021; 11(2):186. https://doi.org/10.3390/min11020186

Chicago/Turabian Style

Avdontceva, Margarita, Sergey Krivovichev, and Victor Yakovenchuk. 2021. "Natrophosphate, Arctic Mineral and Nuclear Waste Phase: Structure Refinements and Chemical Variability" Minerals 11, no. 2: 186. https://doi.org/10.3390/min11020186

Note that from the first issue of 2016, this journal uses article numbers instead of page numbers. See further details here.

Article Metrics

Back to TopTop