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The Role of aDNA in Understanding the Coevolutionary Patterns of Human Sexually Transmitted Infections

1
Department of Cancer Epidemiology and Prevention, Bellvitge Institute of Biomedical Research, Catalan Institute of Oncology, 08908 Barcelona, Spain
2
Department of Archaeology, University of Helsinki, 00014 Helsinki, Finland
3
Department of Epidemiology, University of Tampere, FI-33014 Tampere, Finland
4
Department of Medicine, Addenbrookes Hospital, University of Cambridge, Cambridge CB2 0QQ, UK
5
Department of Archaeology, University of Cambridge, Cambridge CB2 3QG, UK
6
Parasites and Microbes, Wellcome Sanger Institute, Hinxton CB10 1SA, UK
7
Centre for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Hatfield 0028, South Africa
8
Human Origins and Palaeo-Environments Research Group, Department of Anthropology and Geography, Oxford Brookes University, Oxford OX3 0BP, UK
*
Author to whom correspondence should be addressed.
Genes 2018, 9(7), 317; https://doi.org/10.3390/genes9070317
Received: 17 May 2018 / Revised: 18 June 2018 / Accepted: 20 June 2018 / Published: 25 June 2018
(This article belongs to the Special Issue Evolutionary Medicine)
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PDF [353 KB, uploaded 25 June 2018]
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Abstract

Analysis of pathogen genome data sequenced from clinical and historical samples has made it possible to perform phylogenetic analyses of sexually transmitted infections on a global scale, and to estimate the diversity, distribution, and coevolutionary host relationships of these pathogens, providing insights into pathogen emergence and disease prevention. Deep-sequenced pathogen genomes from clinical studies and ancient samples yield estimates of within-host and between-host evolutionary rates and provide data on changes in pathogen genomic stability and evolutionary responses. Here we examine three groups of pathogens transmitted mainly through sexual contact between modern humans to provide insight into ancient human behavior and history with their pathogens. Exploring ancient pathogen genomic divergence and the ancient viral-host parallel evolutionary histories will help us to reconstruct the origin of present-day geographical distribution and diversity of clinical pathogen infections, and will hopefully allow us to foresee possible environmentally induced pathogen evolutionary responses. Lastly, we emphasize that ancient pathogen DNA research should be combined with modern clinical pathogen data, and be equitable and provide advantages for all researchers worldwide, e.g., through shared data. View Full-Text
Keywords: evolutionary medicine; sexually transmitted infections; papillomaviruses; herpesviruses; ectoparasites; virus-host coevolution; divergence; host-switch; Hominin evolution evolutionary medicine; sexually transmitted infections; papillomaviruses; herpesviruses; ectoparasites; virus-host coevolution; divergence; host-switch; Hominin evolution
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This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited (CC BY 4.0).
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Pimenoff, V.N.; Houldcroft, C.J.; Rifkin, R.F.; Underdown, S. The Role of aDNA in Understanding the Coevolutionary Patterns of Human Sexually Transmitted Infections. Genes 2018, 9, 317.

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