- ⧫
Acute Lymphoblastic Leukemia (86 samples):
- •
Source H1 = [
46]. Sample IDs are of the form SJHYPO*, where * is:
001-D, 002-D, 004-D, 005-D, 006-D, 009-D, 009-R, 012-D, 013-D, 014-D, 016-D, 019-D, 020-D, 022-D, 024-D, 026-D, 029-D, 032-D, 036-D, 037-D, 037-R, 039-D, 040-D, 041-D, 042-D, 044-D, 045-D, 046-D, 047-D, 051-D, 052-D, 052-R, 055-D, 056-D, 116-D, 117-D, 119-D, 120-D, 123-D, 124-D, 125-D, 126-D.
- •
Source Z1 = [
47]. Sample IDs are of the form SJTALL*, where * is:
001, 002, 003, 004, 005, 006, 007, 008, 009, 011, 012, 013, 169, 192, 208.
- •
TBR01, TBR03, TBR05, TBR06, TBR08, TLE02, TLE10, TLE109, TLE31, TLE33, TLE34, TLE38, TLE39, TLE41, TLE42, TLE43, TLE50, TLE51, TLE54, TLE55, TLE57, TLE60, TLE61, TLE63, TLE64, TLE65, TLE66, TLE67, TLE68.
- ⧫
Acute Myeloid Leukemia (190 samples):
- •
Source T1 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-AB-*, where * is:
2802, 2803, 2804, 2805, 2806, 2807, 2808, 2809, 2810, 2811, 2812, 2813, 2814, 2816, 2817, 2818, 2819, 2820, 2821, 2822, 2824, 2825, 2826, 2827, 2828, 2829, 2830, 2831, 2832, 2833, 2835, 2836, 2837, 2838, 2839, 2841, 2842, 2843, 2844, 2845, 2846, 2847, 2849, 2850, 2851, 2853, 2854, 2855, 2857, 2858, 2859, 2860, 2861, 2862, 2863, 2864, 2865, 2866, 2867, 2868, 2869, 2870, 2871, 2872, 2873, 2874, 2875, 2876, 2877, 2878, 2879, 2880, 2881, 2882, 2883, 2884, 2885, 2886, 2887, 2888, 2889, 2890, 2891, 2892, 2893, 2894, 2895, 2896, 2897, 2898, 2899, 2900, 2901, 2904, 2905, 2906, 2907, 2908, 2910, 2911, 2912, 2913, 2914, 2915, 2916, 2917, 2918, 2919, 2920, 2921, 2922, 2923, 2924, 2925, 2926, 2927, 2928, 2929, 2930, 2931, 2932, 2933, 2934, 2935, 2936, 2937, 2938, 2939, 2940, 2941, 2943, 2945, 2946, 2947, 2948, 2949, 2950, 2952, 2954, 2955, 2956, 2957, 2959, 2963, 2964, 2965, 2966, 2967, 2968, 2969, 2970, 2971, 2972, 2973, 2974, 2975, 2976, 2977, 2978, 2979, 2980, 2981, 2982, 2983, 2984, 2985, 2986, 2987, 2988, 2989, 2990, 2991, 2992, 2993, 2994, 2995, 2996, 2997, 2998, 2999, 3000, 3001, 3002, 3005, 3006, 3007, 3008, 3009, 3011, 3012.
- ⧫
Adrenocortical Carcinoma (91 samples):
- •
Source T2 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
OR-A5J1, OR-A5J2, OR-A5J3, OR-A5J4, OR-A5J5, OR-A5J6, OR-A5J7, OR-A5J8, OR-A5J9, OR-A5JA, OR-A5JB, OR-A5JC, OR-A5JD, OR-A5JE, OR-A5JF, OR-A5JG, OR-A5JH, OR-A5JI, OR-A5JJ, OR-A5JK, OR-A5JL, OR-A5JM, OR-A5JO, OR-A5JP, OR-A5JQ, OR-A5JR, OR-A5JS, OR-A5JT, OR-A5JU, OR-A5JV, OR-A5JW, OR-A5JX, OR-A5JY, OR-A5JZ, OR-A5K0, OR-A5K1, OR-A5K2, OR-A5K3, OR-A5K4, OR-A5K5, OR-A5K6, OR-A5K8, OR-A5K9, OR-A5KB, OR-A5KO, OR-A5KP, OR-A5KQ, OR-A5KS, OR-A5KT, OR-A5KU, OR-A5KV, OR-A5KW, OR-A5KX, OR-A5KY, OR-A5KZ, OR-A5L1, OR-A5L2, OR-A5L3, OR-A5L4, OR-A5L5, OR-A5L6, OR-A5L8, OR-A5L9, OR-A5LA, OR-A5LB, OR-A5LC, OR-A5LD, OR-A5LE, OR-A5LF, OR-A5LG, OR-A5LH, OR-A5LI, OR-A5LJ, OR-A5LK, OR-A5LL, OR-A5LN, OR-A5LO, OR-A5LP, OR-A5LR, OR-A5LS, OR-A5LT, OU-A5PI, P6-A5OF, P6-A5OG, P6-A5OH, PA-A5YG, PK-A5H8, PK-A5H9, PK-A5HA, PK-A5HB, PK-A5HC.
- ⧫
B-Cell Lymphoma (24 samples):
- •
Source M1 = [
49]. In DLBCL sample IDs * runs from A though M (e.g., DLBCL-PatientC):
07-35482, DLBCL-Patient*, FL-PatientA, FL009.
- •
1060, 1061, 1065, 1093, 1096, 1102, 515, EB2.
- ⧫
Benign Liver Tumor (40 samples):
- •
Source P1 = [
51]. Sample IDs are of the form CHC*, where * is:
1023T, 1124T, 1315T, 1328T, 1329T, 1337T, 1382T, 1383T, 1424T, 1425T, 1428T, 1432T, 1434T, 1439T, 1488T, 1489T, 1665T, 1666T, 1854T, 1916T, 340T, 361TB, 462T, 463T, 464T, 470T, 471T, 517T, 575T, 578T, 603T, 605T, 623T, 624T, 674T, 687T, 689T, 846T, 918T, 976T.
- ⧫
Bladder Cancer (341 samples):
- •
Source G1 = [
52]. Sample IDs are of the form TCC+AF8-B**+AC0-Tumor, where ** is (below * stands for +AC0-, e.g., 104*0 = 104+AC0-0, and the full sample ID is TCC+AF8-B104+AC0-0+AC0-Tumor):
10, 100, 101, 102, 103, 104*0, 104, 105*0, 105*1, 105, 106, 107, 109, 11, 110, 111, 112, 114, 13, 14, 15, 16, 17, 18, 19, 2, 20, 21, 22, 23, 24, 25, 34, 35, 37, 41, 43, 45, 47, 5, 50, 52, 54, 55, 56, 57, 58, 59*0, 59*1, 59*3, 59, 60, 61, 62*0, 63, 64, 65, 66*0, 66, 68, 70, 71, 73, 74, 77, 78, 79, 8, 80*0, 80*1, 80*11, 80*13, 80*3, 80*4, 80*5, 80*7, 80*8, 80, 81*1, 81*2, 81, 82, 83, 84, 85*0, 85*2, 86, 87, 88, 89*1, 89*10, 89*11, 89*12, 89*16, 89*3, 89*4, 89*5, 9, 90, 92, 96, 98, 99.
- •
Source T3 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA+AC0-**, where ** is (below * stands for +AC0-A, e.g., BL*0C8 = BL+AC0-A0C8, and the full sample ID is TCGA+AC0-BL+AC0-A0C8; also, below ⋆ = 3OO = 3-double-O):
BL*0C8, BL*13I, BL*13J, BL*3JM, BL*5ZZ, BT*0S7, BT*0YX, BT*20J, BT*20N, BT*20O, BT*20P, BT*20Q, BT*20R, BT*20T, BT*20U, BT*20V, BT*20W, BT*20X, BT*2LA, BT*2LB, BT*2LD, BT*3PH, BT*3PJ, BT*3PK, BT*42B, BT*42C, BT*42E, BT*42F, C4*0EZ, C4*0F0, C4*0F1, C4*0F6, C4*0F7, CF*1HR, CF*1HS, CF*27C, CF*3MF, CF*3MG, CF*3MH, CF*3MI, CF*47S, CF*47T, CF*47V, CF*47W, CF*47X, CF*47Y, CF*5U8, CF*5UA, CU*0YN, CU*0YO, CU*0YR, CU*3KJ, CU*3QU, CU*3YL, CU*5W6, CU*72E, DK*1A3, DK*1A5, DK*1A6, DK*1A7, DK*1AA, DK*1AB, DK*1AC, DK*1AD, DK*1AE, DK*1AF, DK*1AG, DK*2HX, DK*2I1, DK*2I2, DK*2I4, DK*2I6, DK*3IK, DK*3IL, DK*3IM, DK*3IN, DK*3IQ, DK*3IS, DK*3IT, DK*3IU, DK*3IV, DK*3WW, DK*3WX, DK*3WY, DK*3X1, DK*3X2, DK*6AV, DK*6AW, DK*6B0, DK*6B1, DK*6B2, DK*6B5, DK*6B6, E5*2PC, E5*4TZ, E5*4U1, E7*3X6, E7*3Y1, E7*4IJ, E7*4XJ, E7*541, E7*5KE, E7*5KF, E7*677, E7*678, E7*6ME, E7*6MF, E7*7DU, E7*7DV, FD*3B3, FD*3B4, FD*3B5, FD*3B6, FD*3B7, FD*3B8, FD*3N5, FD*3N6, FD*3NA, FD*3SJ, FD*3SL, FD*3SM, FD*3SN, FD*3SO, FD*3SP, FD*3SQ, FD*3SR, FD*3SS, FD*43N, FD*43P, FD*43S, FD*43U, FD*43X, FD*5BR, FD*5BS, FD*5BU, FD*5BV, FD*5BX, FD*5BY, FD*5BZ, FD*5C0, FD*5C1, FD*62N, FD*62O, FD*62P, FD*62S, FD*6TA, FD*6TB, FD*6TC, FD*6TD, FD*6TE, FD*6TF, FD*6TG, FD*6TH, FD*6TI, FD*6TK, FJ*3Z7, FJ*3Z9, FJ*3ZE, FJ*3ZF, FT*3EE, FT*61P, G2*2EC, G2*2EF, G2*2EJ, G2*2EK, G2*2EL, G2*2EO, G2*2ES, G2*3IB, G2*3IE, G2*3VY, GC*3BM, GC*3I6, GC*⋆, GC*3RB, GC*3RC, GC*3RD, GC*3WC, GC*3YS, GC*6I1, GC*6I3, GD*2C5, GD*3OP, GD*3OQ, GD*3OS, GD*6C6, GD*76B, GU*42P, GU*42Q, GU*42R, GU*762, GU*763, GU*766, GU*767, GV*3JV, GV*3JW, GV*3JX, GV*3JZ, GV*3QF, GV*3QG, GV*3QH, GV*3QI, GV*3QK, GV*40E, GV*40G, GV*6ZA, H4*2HO, H4*2HQ, HQ*2OE, HQ*2OF, HQ*5ND, HQ*5NE, K4*3WS, K4*3WU, K4*3WV, K4*4AB, K4*4AC, K4*54R, K4*5RH, K4*5RI, K4*5RJ, K4*6FZ, K4*6MB, KQ*41N, KQ*41P, KQ*41Q, KQ*41S, LC*66R, LT*5Z6, MV*51V, PQ*6FI, PQ*6FN, R3*69X, S5*6DX, UY*78K, UY*78L, UY*78N, UY*78O.
- ⧫
Brain Lower Grade Glioma (465 samples):
- •
Source T4 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
CS-4938, CS-4941, CS-4942, CS-4943, CS-4944, CS-5390, CS-5393, CS-5394, CS-5395, CS-5396, CS-5397, CS-6186, CS-6188, CS-6290, CS-6665, CS-6666, CS-6667, CS-6668, CS-6669, CS-6670, DB-5270, DB-5273, DB-5274, DB-5275, DB-5276, DB-5277, DB-5278, DB-5279, DB-5280, DB-5281, DB-A4X9, DB-A4XA, DB-A4XB, DB-A4XC, DB-A4XD, DB-A4XE, DB-A4XF, DB-A4XG, DB-A4XH, DB-A64L, DB-A64O, DB-A64P, DB-A64Q, DB-A64R, DB-A64S, DB-A64U, DB-A64V, DB-A64W, DB-A64X, DB-A75K, DB-A75L, DB-A75M, DB-A75O, DB-A75P, DH-5140, DH-5141, DH-5142, DH-5143, DH-5144, DH-A669, DH-A66B, DH-A66D, DH-A66F, DH-A66G, DH-A7UR, DH-A7US, DH-A7UT, DH-A7UU, DH-A7UV, DU-5847, DU-5849, DU-5851, DU-5852, DU-5853, DU-5854, DU-5855, DU-5870, DU-5871, DU-5872, DU-5874, DU-6392, DU-6393, DU-6394, DU-6395, DU-6396, DU-6397, DU-6399, DU-6400, DU-6401, DU-6402, DU-6403, DU-6404, DU-6405, DU-6406, DU-6407, DU-6408, DU-6410, DU-6542, DU-7006, DU-7007, DU-7008, DU-7009, DU-7010, DU-7011, DU-7012, DU-7013, DU-7014, DU-7015, DU-7018, DU-7019, DU-7290, DU-7292, DU-7294, DU-7298, DU-7299, DU-7300, DU-7301, DU-7302, DU-7304, DU-7306, DU-7309, DU-8158, DU-8161, DU-8162, DU-8163, DU-8164, DU-8165, DU-8166, DU-8167, DU-8168, DU-A5TP, DU-A5TR, DU-A5TS, DU-A5TT, DU-A5TU, DU-A5TW, DU-A5TY, DU-A6S2, DU-A6S3, DU-A6S6, DU-A6S7, DU-A6S8, DU-A76K, DU-A76L, DU-A76O, DU-A76R, DU-A7T6, DU-A7T8, DU-A7TA, DU-A7TB, DU-A7TC, DU-A7TD, DU-A7TG, DU-A7TJ, E1-5302, E1-5303, E1-5304, E1-5305, E1-5307, E1-5311, E1-5318, E1-5319, E1-5322, E1-A7YD, E1-A7YE, E1-A7YH, E1-A7YI, E1-A7YJ, E1-A7YK, E1-A7YL, E1-A7YM, E1-A7YN, E1-A7YO, E1-A7YQ, E1-A7YS, E1-A7YU, E1-A7YV, E1-A7YW, E1-A7YY, E1-A7Z2, E1-A7Z3, E1-A7Z4, E1-A7Z6, EZ-7264, FG-5962, FG-5963, FG-5964, FG-5965, FG-6688, FG-6689, FG-6690, FG-6691, FG-6692, FG-7634, FG-7636, FG-7637, FG-7638, FG-7641, FG-7643, FG-8181, FG-8182, FG-8185, FG-8186, FG-8187, FG-8188, FG-8189, FG-8191, FG-A4MT, FG-A4MU, FG-A4MW, FG-A4MX, FG-A4MY, FG-A60J, FG-A60K, FG-A60L, FG-A6IZ, FG-A6J1, FG-A6J3, FG-A70Y, FG-A70Z, FG-A710, FG-A711, FG-A713, FN-7833, HT-7467, HT-7468, HT-7469, HT-7470, HT-7471, HT-7472, HT-7473, HT-7474, HT-7475, HT-7476, HT-7477, HT-7478, HT-7479, HT-7480, HT-7481, HT-7482, HT-7483, HT-7485, HT-7601, HT-7602, HT-7603, HT-7604, HT-7605, HT-7606, HT-7607, HT-7608, HT-7609, HT-7610, HT-7611, HT-7616, HT-7620, HT-7676, HT-7677, HT-7680, HT-7681, HT-7684, HT-7686, HT-7687, HT-7688, HT-7689, HT-7690, HT-7691, HT-7692, HT-7693, HT-7694, HT-7695, HT-7854, HT-7855, HT-7856, HT-7857, HT-7858, HT-7860, HT-7873, HT-7874, HT-7875, HT-7877, HT-7879, HT-7880, HT-7881, HT-7882, HT-7884, HT-7902, HT-8010, HT-8011, HT-8012, HT-8013, HT-8015, HT-8018, HT-8019, HT-8104, HT-8105, HT-8106, HT-8107, HT-8108, HT-8109, HT-8110, HT-8111, HT-8113, HT-8114, HT-8558, HT-8563, HT-8564, HT-A4DS, HT-A4DV, HT-A5R5, HT-A5R7, HT-A5R9, HT-A5RA, HT-A5RB, HT-A5RC, HT-A614, HT-A615, HT-A616, HT-A617, HT-A618, HT-A619, HT-A61A, HT-A61B, HT-A61C, HT-A74H, HT-A74J, HT-A74K, HT-A74L, HT-A74O, HW-7486, HW-7487, HW-7489, HW-7490, HW-7491, HW-7493, HW-7495, HW-8319, HW-8320, HW-8321, HW-8322, HW-A5KJ, HW-A5KK, HW-A5KL, HW-A5KM, IK-7675, IK-8125, KT-A74X, KT-A7W1, P5-A5ET, P5-A5EU, P5-A5EV, P5-A5EW, P5-A5EX, P5-A5EY, P5-A5EZ, P5-A5F0, P5-A5F1, P5-A5F2, P5-A5F4, P5-A5F6, P5-A72U, P5-A72W, P5-A72X, P5-A72Z, P5-A730, P5-A731, P5-A733, P5-A735, P5-A736, P5-A737, P5-A77W, P5-A77X, P5-A780, P5-A781, QH-A65R, QH-A65S, QH-A65V, QH-A65X, QH-A65Z, QH-A6CS, QH-A6CU, QH-A6CV, QH-A6CW, QH-A6CX, QH-A6CY, QH-A6CZ, QH-A6X3, QH-A6X4, QH-A6X5, QH-A6X8, QH-A6X9, QH-A6XA, QH-A6XC, R8-A6MK, R8-A6ML, R8-A6MO, R8-A6YH, R8-A73M, S9-A6TS, S9-A6TU, S9-A6TV, S9-A6TW, S9-A6TX, S9-A6TY, S9-A6TZ, S9-A6U0, S9-A6U1, S9-A6U2, S9-A6U5, S9-A6U6, S9-A6U8, S9-A6U9, S9-A6UA, S9-A6UB, S9-A6WD, S9-A6WE, S9-A6WG, S9-A6WH, S9-A6WI, S9-A6WL, S9-A6WM, S9-A6WN, S9-A6WO, S9-A6WP, S9-A6WQ, S9-A7IQ, S9-A7IS, S9-A7IX, S9-A7IY, S9-A7IZ, S9-A7J0, S9-A7J1, S9-A7J2, S9-A7J3, S9-A7QW, S9-A7QX, S9-A7QY, S9-A7QZ, S9-A7R1, S9-A7R2, S9-A7R3, S9-A7R4, S9-A7R7, S9-A7R8, TM-A7C3, TM-A7C4, TM-A7C5, TM-A7CA, TM-A7CF, TQ-A7RF, TQ-A7RG, TQ-A7RH, TQ-A7RI, TQ-A7RJ, TQ-A7RK, TQ-A7RM, TQ-A7RN, TQ-A7RO, TQ-A7RP, TQ-A7RQ, TQ-A7RR, TQ-A7RS, TQ-A7RU, TQ-A7RV, TQ-A7RW, VW-A7QS.
- ⧫
Breast Cancer (1182 samples):
- •
Source N1 = [
53]. Sample IDs are of the form CGP_specimen_*, where * is:
1096043, 1142475, 1142532, 1142534, 1192095, 1192097, 1192099, 1192101, 1192103, 1192105, 1192107, 1192111, 1192113, 1192115, 1192117, 1192119, 1192121, 1192123, 1192125, 1192127, 1192129, 1192131, 1192133, 1192135, 1192137, 1195364, 1195366, 1195368, 1212804, 1212810, 1212816, 1212822, 1212825, 1212828, 1215490, 1215532, 1215535, 1215553, 1215559, 1215561, 1215563, 1215565, 1215567, 1215573, 1223855, 1223858, 1223861, 1227889, 1227916, 1227918, 1227920, 1227922, 1227924, 1227926, 1227928, 1227951, 1227953, 1227955, 1227957, 1227959, 1227961, 1227963, 1227965, 1227969, 1227971, 1241537, 1241539, 1241541, 1241543, 1241545, 1241547, 1241549, 1241551, 1241553, 1241555, 1241557, 1241559, 1241562, 1241565, 1241568, 1241571, 1241574, 1241579, 1241581, 1261287, 1261291, 1261293, 1261295, 1261297, 1261299, 1261301, 1261303, 1261305, 1261307, 1261309, 1261311, 1261313, 1261337, 1261382, 1261391, 1266549, 1266551, 1266553, 1266561, 1266563, 1266565, 1266567, 1343241, 1343244, 1343247, 1380057, 1380059, 1380061, 1380063, 1380065, 1380067.
- •
Source S1 = [
54]. Sample IDs are of the form PD*a, where * is:
4842, 4843, 4844, 4934, 4935, 4936, 4937, 4938, 4939, 5961, 7206, 7211, 7316, 9193.
- •
Source S2 = [
55]. Sample IDs are of the form SA*, where * is:
018, 029, 030, 031, 051, 052, 053, 054, 055, 063, 065, 067, 068, 069, 071, 072, 073, 074, 075, 076, 077, 080, 083, 084, 085, 089, 090, 092, 093, 094, 096, 097, 098, 101, 102, 103, 106, 208, 210, 212, 213, 214, 215, 216, 217, 218, 219, 220, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 233, 234, 235, 236, 237.
- •
Source T5 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
A1-A0SB, A1-A0SD, A1-A0SE, A1-A0SF, A1-A0SG, A1-A0SH, A1-A0SI, A1-A0SJ, A1-A0SK, A1-A0SM, A1-A0SN, A1-A0SO, A1-A0SP, A1-A0SQ, A2-A04N, A2-A04P, A2-A04Q, A2-A04R, A2-A04T, A2-A04U, A2-A04V, A2-A04W, A2-A04X, A2-A04Y, A2-A0CK, A2-A0CL, A2-A0CM, A2-A0CO, A2-A0CP, A2-A0CQ, A2-A0CR, A2-A0CS, A2-A0CT, A2-A0CU, A2-A0CV, A2-A0CW, A2-A0CX, A2-A0CZ, A2-A0D0, A2-A0D1, A2-A0D2, A2-A0D3, A2-A0D4, A2-A0EM, A2-A0EN, A2-A0EO, A2-A0EP, A2-A0EQ, A2-A0ER, A2-A0ES, A2-A0ET, A2-A0EU, A2-A0EV, A2-A0EW, A2-A0EX, A2-A0EY, A2-A0ST, A2-A0SU, A2-A0SV, A2-A0SW, A2-A0SX, A2-A0SY, A2-A0T0, A2-A0T1, A2-A0T2, A2-A0T3, A2-A0T4, A2-A0T5, A2-A0T6, A2-A0T7, A2-A0YC, A2-A0YD, A2-A0YE, A2-A0YF, A2-A0YG, A2-A0YH, A2-A0YI, A2-A0YJ, A2-A0YK, A2-A0YL, A2-A0YM, A2-A0YT, A2-A1FV, A2-A1FW, A2-A1FX, A2-A1FZ, A2-A1G0, A2-A1G1, A2-A1G4, A2-A1G6, A2-A259, A2-A25A, A2-A25B, A2-A25C, A2-A25D, A2-A25E, A2-A25F, A2-A3KC, A2-A3KD, A2-A3XS, A2-A3XT, A2-A3XU, A2-A3XV, A2-A3XW, A2-A3XX, A2-A3XY, A2-A3XZ, A2-A3Y0, A2-A4RW, A2-A4RX, A2-A4RY, A2-A4S0, A2-A4S1, A2-A4S2, A2-A4S3, A7-A0CD, A7-A0CE, A7-A0CG, A7-A0CH, A7-A0CJ, A7-A0D9, A7-A0DA, A7-A0DB, A7-A0DC, A7-A13D, A7-A13E, A7-A13F, A7-A13G, A7-A13H, A7-A26E, A7-A26F, A7-A26G, A7-A26H, A7-A26I, A7-A26J, A7-A2KD, A7-A3IY, A7-A3IZ, A7-A3J0, A7-A3J1, A7-A3RF, A7-A425, A7-A426, A7-A4SA, A7-A4SB, A7-A4SC, A7-A4SD, A7-A4SE, A7-A4SF, A7-A56D, A7-A5ZV, A7-A5ZW, A7-A5ZX, A8-A06N, A8-A06O, A8-A06P, A8-A06Q, A8-A06R, A8-A06T, A8-A06U, A8-A06X, A8-A06Y, A8-A06Z, A8-A075, A8-A076, A8-A079, A8-A07B, A8-A07C, A8-A07E, A8-A07F, A8-A07G, A8-A07I, A8-A07J, A8-A07L, A8-A07O, A8-A07P, A8-A07R, A8-A07U, A8-A07W, A8-A07Z, A8-A081, A8-A082, A8-A083, A8-A084, A8-A085, A8-A086, A8-A08A, A8-A08B, A8-A08F, A8-A08G, A8-A08H, A8-A08I, A8-A08J, A8-A08L, A8-A08O, A8-A08P, A8-A08R, A8-A08S, A8-A08T, A8-A08X, A8-A08Z, A8-A090, A8-A091, A8-A092, A8-A093, A8-A094, A8-A095, A8-A096, A8-A097, A8-A099, A8-A09A, A8-A09B, A8-A09C, A8-A09D, A8-A09E, A8-A09G, A8-A09I, A8-A09K, A8-A09M, A8-A09N, A8-A09Q, A8-A09R, A8-A09T, A8-A09V, A8-A09W, A8-A09X, A8-A09Z, A8-A0A1, A8-A0A2, A8-A0A4, A8-A0A6, A8-A0A7, A8-A0A9, A8-A0AB, A8-A0AD, AC-A23C, AC-A23E, AC-A23G, AC-A23H, AC-A2B8, AC-A2BK, AC-A2BM, AC-A2FB, AC-A2FE, AC-A2FF, AC-A2FG, AC-A2FK, AC-A2FM, AC-A2FO, AC-A2QH, AC-A2QI, AC-A2QJ, AC-A3BB, AC-A3EH, AC-A3HN, AC-A3OD, AC-A3QP, AC-A3TM, AC-A3TN, AC-A3W5, AC-A3W6, AC-A3W7, AC-A3YI, AC-A3YJ, AC-A5EH, AC-A5EI, AC-A5XS, AC-A5XU, AC-A62X, AC-A62Y, AN-A03X, AN-A03Y, AN-A041, AN-A046, AN-A049, AN-A04A, AN-A04C, AN-A04D, AN-A0AJ, AN-A0AK, AN-A0AL, AN-A0AM, AN-A0AR, AN-A0AS, AN-A0AT, AN-A0FD, AN-A0FF, AN-A0FJ, AN-A0FK, AN-A0FL, AN-A0FN, AN-A0FS, AN-A0FT, AN-A0FV, AN-A0FW, AN-A0FX, AN-A0FY, AN-A0FZ, AN-A0G0, AN-A0XL, AN-A0XN, AN-A0XO, AN-A0XP, AN-A0XR, AN-A0XS, AN-A0XT, AN-A0XU, AN-A0XV, AN-A0XW, AO-A03L, AO-A03M, AO-A03N, AO-A03O, AO-A03P, AO-A03R, AO-A03T, AO-A03U, AO-A03V, AO-A0J2, AO-A0J3, AO-A0J4, AO-A0J5, AO-A0J6, AO-A0J7, AO-A0J8, AO-A0J9, AO-A0JA, AO-A0JB, AO-A0JC, AO-A0JD, AO-A0JE, AO-A0JF, AO-A0JG, AO-A0JI, AO-A0JJ, AO-A0JL, AO-A0JM, AO-A124, AO-A125, AO-A126, AO-A128, AO-A129, AO-A12A, AO-A12B, AO-A12D, AO-A12E, AO-A12F, AO-A12G, AO-A12H, AO-A1KO, AO-A1KP, AO-A1KR, AO-A1KS, AO-A1KT, AQ-A04H, AQ-A04J, AQ-A04L, AQ-A0Y5, AQ-A1H2, AQ-A1H3, AQ-A54N, AQ-A54O, AR-A0TP, AR-A0TQ, AR-A0TR, AR-A0TS, AR-A0TT, AR-A0TU, AR-A0TV, AR-A0TW, AR-A0TX, AR-A0TY, AR-A0TZ, AR-A0U0, AR-A0U1, AR-A0U2, AR-A0U3, AR-A0U4, AR-A1AH, AR-A1AI, AR-A1AJ, AR-A1AK, AR-A1AL, AR-A1AM, AR-A1AN, AR-A1AO, AR-A1AP, AR-A1AQ, AR-A1AR, AR-A1AS, AR-A1AT, AR-A1AU, AR-A1AV, AR-A1AW, AR-A1AX, AR-A1AY, AR-A24H, AR-A24K, AR-A24L, AR-A24M, AR-A24N, AR-A24O, AR-A24P, AR-A24Q, AR-A24R, AR-A24S, AR-A24T, AR-A24U, AR-A24V, AR-A24W, AR-A24X, AR-A24Z, AR-A250, AR-A251, AR-A252, AR-A254, AR-A255, AR-A256, AR-A2LE, AR-A2LH, AR-A2LJ, AR-A2LK, AR-A2LL, AR-A2LM, AR-A2LN, AR-A2LO, AR-A2LQ, AR-A2LR, AR-A5QM, AR-A5QN, AR-A5QP, AR-A5QQ, B6-A0I1, B6-A0I2, B6-A0I5, B6-A0I6, B6-A0I8, B6-A0I9, B6-A0IA, B6-A0IB, B6-A0IC, B6-A0IE, B6-A0IG, B6-A0IH, B6-A0IJ, B6-A0IK, B6-A0IM, B6-A0IN, B6-A0IO, B6-A0IP, B6-A0IQ, B6-A0RE, B6-A0RG, B6-A0RH, B6-A0RI, B6-A0RL, B6-A0RM, B6-A0RN, B6-A0RO, B6-A0RP, B6-A0RQ, B6-A0RS, B6-A0RT, B6-A0RU, B6-A0RV, B6-A0WS, B6-A0WT, B6-A0WV, B6-A0WW, B6-A0WX, B6-A0WY, B6-A0WZ, B6-A0X0, B6-A0X1, B6-A0X4, B6-A0X5, B6-A0X7, B6-A1KC, B6-A1KF, B6-A1KI, B6-A1KN, B6-A2IU, B6-A3ZX, B6-A400, B6-A401, B6-A402, B6-A408, B6-A409, B6-A40B, B6-A40C, BH-A0AU, BH-A0AV, BH-A0AW, BH-A0AY, BH-A0AZ, BH-A0B0, BH-A0B1, BH-A0B3, BH-A0B4, BH-A0B5, BH-A0B6, BH-A0B7, BH-A0B8, BH-A0B9, BH-A0BA, BH-A0BC, BH-A0BD, BH-A0BF, BH-A0BG, BH-A0BJ, BH-A0BL, BH-A0BM, BH-A0BO, BH-A0BP, BH-A0BQ, BH-A0BR, BH-A0BS, BH-A0BT, BH-A0BV, BH-A0BW, BH-A0BZ, BH-A0C0, BH-A0C1, BH-A0C3, BH-A0C7, BH-A0DD, BH-A0DE, BH-A0DG, BH-A0DH, BH-A0DI, BH-A0DK, BH-A0DL, BH-A0DO, BH-A0DP, BH-A0DQ, BH-A0DS, BH-A0DT, BH-A0DV, BH-A0DX, BH-A0DZ, BH-A0E0, BH-A0E1, BH-A0E2, BH-A0E6, BH-A0E7, BH-A0E9, BH-A0EA, BH-A0EB, BH-A0EE, BH-A0EI, BH-A0GY, BH-A0GZ, BH-A0H0, BH-A0H3, BH-A0H5, BH-A0H6, BH-A0H7, BH-A0H9, BH-A0HA, BH-A0HB, BH-A0HF, BH-A0HI, BH-A0HK, BH-A0HL, BH-A0HN, BH-A0HO, BH-A0HP, BH-A0HQ, BH-A0HU, BH-A0HW, BH-A0HX, BH-A0HY, BH-A0RX, BH-A0W3, BH-A0W4, BH-A0W5, BH-A0W7, BH-A0WA, BH-A18F, BH-A18G, BH-A18H, BH-A18I, BH-A18J, BH-A18K, BH-A18L, BH-A18M, BH-A18N, BH-A18P, BH-A18Q, BH-A18R, BH-A18S, BH-A18T, BH-A18U, BH-A18V, BH-A1EN, BH-A1EO, BH-A1ES, BH-A1ET, BH-A1EU, BH-A1EV, BH-A1EW, BH-A1EX, BH-A1EY, BH-A1F0, BH-A1F2, BH-A1F5, BH-A1F6, BH-A1F8, BH-A1FC, BH-A1FD, BH-A1FE, BH-A1FG, BH-A1FH, BH-A1FJ, BH-A1FL, BH-A1FM, BH-A1FN, BH-A1FR, BH-A1FU, BH-A201, BH-A202, BH-A203, BH-A204, BH-A208, BH-A209, BH-A28O, BH-A28Q, BH-A2L8, BH-A42T, BH-A42U, BH-A42V, BH-A5IZ, BH-A5J0, C8-A12K, C8-A12L, C8-A12M, C8-A12N, C8-A12O, C8-A12P, C8-A12Q, C8-A12T, C8-A12U, C8-A12V, C8-A12W, C8-A12X, C8-A12Y, C8-A12Z, C8-A130, C8-A131, C8-A132, C8-A133, C8-A134, C8-A135, C8-A137, C8-A138, C8-A1HE, C8-A1HF, C8-A1HG, C8-A1HI, C8-A1HJ, C8-A1HK, C8-A1HL, C8-A1HM, C8-A1HN, C8-A1HO, C8-A26V, C8-A26W, C8-A26X, C8-A26Y, C8-A26Z, C8-A273, C8-A274, C8-A275, C8-A278, C8-A27A, C8-A27B, C8-A3M7, C8-A3M8, D8-A13Y, D8-A13Z, D8-A140, D8-A141, D8-A142, D8-A143, D8-A145, D8-A146, D8-A147, D8-A1J8, D8-A1J9, D8-A1JA, D8-A1JB, D8-A1JC, D8-A1JD, D8-A1JE, D8-A1JF, D8-A1JG, D8-A1JH, D8-A1JI, D8-A1JJ, D8-A1JK, D8-A1JL, D8-A1JM, D8-A1JN, D8-A1JP, D8-A1JS, D8-A1JT, D8-A1JU, D8-A1X5, D8-A1X6, D8-A1X7, D8-A1X8, D8-A1X9, D8-A1XA, D8-A1XB, D8-A1XC, D8-A1XF, D8-A1XG, D8-A1XJ, D8-A1XK, D8-A1XL, D8-A1XM, D8-A1XO, D8-A1XQ, D8-A1XR, D8-A1XS, D8-A1XT, D8-A1XU, D8-A1XV, D8-A1XW, D8-A1XY, D8-A1XZ, D8-A1Y0, D8-A1Y1, D8-A1Y2, D8-A1Y3, D8-A27E, D8-A27F, D8-A27G, D8-A27H, D8-A27I, D8-A27K, D8-A27L, D8-A27M, D8-A27N, D8-A27P, D8-A27R, D8-A27T, D8-A27V, D8-A27W, D8-A3Z5, D8-A3Z6, D8-A4Z1, E2-A105, E2-A107, E2-A108, E2-A109, E2-A10A, E2-A10B, E2-A10C, E2-A10E, E2-A10F, E2-A14N, E2-A14O, E2-A14P, E2-A14Q, E2-A14R, E2-A14S, E2-A14T, E2-A14U, E2-A14V, E2-A14W, E2-A14X, E2-A14Y, E2-A14Z, E2-A150, E2-A152, E2-A153, E2-A154, E2-A155, E2-A156, E2-A158, E2-A159, E2-A15A, E2-A15C, E2-A15D, E2-A15E, E2-A15F, E2-A15G, E2-A15H, E2-A15I, E2-A15J, E2-A15K, E2-A15L, E2-A15M, E2-A15O, E2-A15P, E2-A15R, E2-A15S, E2-A15T, E2-A1AZ, E2-A1B0, E2-A1B1, E2-A1B4, E2-A1B5, E2-A1B6, E2-A1BC, E2-A1BD, E2-A1IE, E2-A1IF, E2-A1IG, E2-A1IH, E2-A1II, E2-A1IJ, E2-A1IK, E2-A1IL, E2-A1IN, E2-A1IO, E2-A1IU, E2-A1L6, E2-A1L7, E2-A1L8, E2-A1L9, E2-A1LA, E2-A1LB, E2-A1LE, E2-A1LG, E2-A1LH, E2-A1LI, E2-A1LK, E2-A1LL, E2-A1LS, E2-A2P5, E2-A2P6, E2-A3DX, E2-A56Z, E2-A570, E2-A573, E2-A574, E9-A1N3, E9-A1N4, E9-A1N5, E9-A1N8, E9-A1N9, E9-A1NA, E9-A1NC, E9-A1ND, E9-A1NE, E9-A1NF, E9-A1NG, E9-A1NH, E9-A1NI, E9-A1QZ, E9-A1R0, E9-A1R2, E9-A1R3, E9-A1R4, E9-A1R5, E9-A1R6, E9-A1R7, E9-A1RA, E9-A1RB, E9-A1RC, E9-A1RD, E9-A1RE, E9-A1RF, E9-A1RG, E9-A1RH, E9-A1RI, E9-A226, E9-A227, E9-A228, E9-A229, E9-A22A, E9-A22B, E9-A22D, E9-A22E, E9-A22G, E9-A22H, E9-A243, E9-A244, E9-A245, E9-A247, E9-A248, E9-A249, E9-A24A, E9-A295, E9-A2JS, E9-A2JT, E9-A3HO, E9-A3Q9, E9-A3QA, E9-A3X8, E9-A54X, E9-A54Y, E9-A5FK, E9-A5FL, E9-A5UO, E9-A5UP, EW-A1IW, EW-A1IX, EW-A1IY, EW-A1IZ, EW-A1J1, EW-A1J2, EW-A1J3, EW-A1J5, EW-A1J6, EW-A1OV, EW-A1OX, EW-A1OY, EW-A1OZ, EW-A1P0, EW-A1P1, EW-A1P3, EW-A1P4, EW-A1P5, EW-A1P6, EW-A1P7, EW-A1P8, EW-A1PA, EW-A1PB, EW-A1PC, EW-A1PD, EW-A1PE, EW-A1PG, EW-A1PH, EW-A2FR, EW-A2FS, EW-A2FV, EW-A2FW, EW-A3E8, EW-A3U0, EW-A423, GI-A2C8, GI-A2C9, GM-A2D9, GM-A2DA, GM-A2DB, GM-A2DC, GM-A2DD, GM-A2DF, GM-A2DH, GM-A2DI, GM-A2DK, GM-A2DL, GM-A2DM, GM-A2DN, GM-A2DO, GM-A3NW, GM-A3NY, GM-A3XG, GM-A3XL, GM-A3XN, GM-A4E0, GM-A5PV, GM-A5PX, HN-A2NL, HN-A2OB, JL-A3YW, JL-A3YX, LL-A440, LL-A441, LL-A50Y, LL-A5YL, LL-A5YM, LL-A5YN, LL-A5YO, LL-A5YP, LQ-A4E4, MS-A51U, OK-A5Q2, OL-A5D6, OL-A5D7, OL-A5D8, OL-A5DA, OL-A5RU, OL-A5RV, OL-A5RW, OL-A5RX, OL-A5RY, OL-A5RZ, OL-A5S0, OL-A66H, OL-A66I, OL-A66J, OL-A66K, PE-A5DC, PE-A5DD, PE-A5DE.
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Cervical Cancer (197 samples):
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Source T6 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
BI-A0VR, BI-A0VS, BI-A20A, C5-A0TN, C5-A1BE, C5-A1BF, C5-A1BI, C5-A1BJ, C5-A1BK, C5-A1BL, C5-A1BM, C5-A1BN, C5-A1BQ, C5-A1M5, C5-A1M6, C5-A1M7, C5-A1M8, C5-A1M9, C5-A1ME, C5-A1MF, C5-A1MH, C5-A1MI, C5-A1MJ, C5-A1MK, C5-A1ML, C5-A1MN, C5-A1MP, C5-A1MQ, C5-A2LS, C5-A2LT, C5-A2LV, C5-A2LX, C5-A2LY, C5-A2LZ, C5-A2M1, C5-A2M2, C5-A3HD, C5-A3HE, C5-A3HF, C5-A3HL, C5-A7CG, C5-A7CH, C5-A7CJ, C5-A7CK, C5-A7CL, C5-A7CM, C5-A7CO, C5-A7UC, C5-A7UE, C5-A7UH, C5-A7X3, DG-A2KH, DG-A2KJ, DG-A2KK, DG-A2KL, DG-A2KM, DR-A0ZL, DR-A0ZM, DS-A0VK, DS-A0VL, DS-A0VM, DS-A0VN, DS-A1OA, DS-A3LQ, DS-A5RQ, DS-A7WF, DS-A7WH, DS-A7WI, EA-A1QS, EA-A1QT, EA-A3HQ, EA-A3HR, EA-A3HT, EA-A3HU, EA-A3QD, EA-A3QE, EA-A3Y4, EA-A410, EA-A411, EA-A439, EA-A43B, EA-A44S, EA-A4BA, EA-A50E, EA-A556, EA-A5FO, EA-A5O9, EA-A5ZD, EA-A5ZE, EA-A5ZF, EA-A6QX, EA-A78R, EK-A2GZ, EK-A2H0, EK-A2H1, EK-A2IP, EK-A2PG, EK-A2PI, EK-A2PK, EK-A2PL, EK-A2PM, EK-A2R7, EK-A2R8, EK-A2R9, EK-A2RA, EK-A2RB, EK-A2RC, EK-A2RD, EK-A2RE, EK-A2RJ, EK-A2RK, EK-A2RL, EK-A2RM, EK-A2RN, EK-A2RO, EK-A3GJ, EK-A3GK, EK-A3GM, EK-A3GN, EX-A1H5, EX-A1H6, EX-A3L1, EX-A449, EX-A69L, EX-A69M, FU-A23K, FU-A23L, FU-A2QG, FU-A3EO, FU-A3HY, FU-A3HZ, FU-A3NI, FU-A3TQ, FU-A3TX, FU-A3WB, FU-A3YQ, FU-A40J, FU-A57G, FU-A5XV, FU-A770, HG-A2PA, HM-A3JJ, HM-A3JK, HM-A4S6, HM-A6W2, IR-A3L7, IR-A3LA, IR-A3LB, IR-A3LC, IR-A3LF, IR-A3LH, IR-A3LI, IR-A3LK, IR-A3LL, JW-A5VG, JW-A5VH, JW-A5VI, JW-A5VJ, JW-A5VK, JW-A5VL, JW-A69B, JW-A852, JX-A3PZ, JX-A3Q0, JX-A3Q8, JX-A5QV, LP-A4AU, LP-A4AV, LP-A4AW, LP-A4AX, LP-A5U2, LP-A5U3, LP-A7HU, MU-A51Y, MU-A5YI, MY-A5BD, MY-A5BE, MY-A5BF, Q1-A5R1, Q1-A5R2, Q1-A5R3, Q1-A6DT, Q1-A6DV, Q1-A6DW, Q1-A73O, Q1-A73P, Q1-A73Q, Q1-A73R, Q1-A73S, R2-A69V, RA-A741, UC-A7PD, UC-A7PF, WL-A834, DS-A1OB, DS-A1OC, DS-A1OD.
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Cholangiocarcinoma (139 samples):
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1, 10, 100, 101, 107, 108, 109, 110, 111, 112, 113, 115, 116, 118, 119, 120, 121, 122, 123, 125, 127, 128, 129, 13, 130, 131, 132, 133, 134, 135, 137, 139, 140, 141, 142, 143, 144, 145, 146, 147, 16, 17, 18, 19, 2, 20, 24, 25, 26, 28, 29, 3, 33, 34, 35, 39, 41, 42, 44, 46, 48, 5, 50, 51, 52, 53, 56, 58, 59, 6, 60, 61, 63, 64, 66, 67, 69, 7, 70, 71, 74, 79, 8, 8_1, 8_2, 8_4, 8_6, 80, 81, 82, 85, 86, 87, 88, 89, 9, 90, 91, 94, 95, 97, 98, 99.
- •
Source T7 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
3X-AAV9, 3X-AAVA, 3X-AAVB, 3X-AAVC, 3X-AAVE, 4G-AAZO, 4G-AAZT, W5-AA2G, W5-AA2H, W5-AA2I, W5-AA2O, W5-AA2Q, W5-AA2R, W5-AA2T, W5-AA2U, W5-AA2W, W5-AA2X, W5-AA2Z, W5-AA30, W5-AA31, W5-AA33, W5-AA34, W5-AA36, W5-AA38, W5-AA39, W6-AA0S, WD-A7RX, YR-A95A, ZD-A8I3, ZH-A8Y1, ZH-A8Y2, ZH-A8Y4, ZH-A8Y5, ZH-A8Y6, ZH-A8Y8, ZU-A8S4.
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Chronic Lymphocytic Leukemia (80 samples):
- •
170, 171, 172, 173, 174, 175, 18, 181, 182, 184, 185, 186, 188, 189, 19, 191, 193, 194, 195, 197, 20, 22, 23, 264, 266, 267, 27, 270, 272, 273, 274, 275, 276, 278, 279, 280, 29, 290, 30, 319, 32, 321, 322, 323, 324, 325, 326, 328, 33, 375, 39, 40, 41, 42, 43, 44, 45, 48, 49, 5, 51, 52, 53, 54, 6, 618, 63, 64, 642, 680, 7, 758, 761, 785, 8, 82, 83, 9, 90, 91.
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Colorectal Cancer (581 samples):
- •
587220, 587222, 587224, 587226, 587228, 587230, 587232, 587234, 587238, 587242, 587246, 587254, 587256, 587260, 587262, 587264, 587268, 587270, 587276, 587278, 587282, 587284, 587286, 587288, 587290, 587292, 587294, 587298, 587300, 587302, 587304, 587306, 587316, 587318, 587322, 587328, 587330, 587332, 587334, 587336, 587338, 587340, 587342, 587344, 587346, 587348, 587350, 587352, 587354, 587356, 587358, 587360, 587362, 587364, 587368, 587370, 587372, 587374, 587376, 587378, 587380, 587382, 587384, 587386, 587388, 587390, 587392, 587394, 587398, 587400.
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Source T8 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
A6-2670, A6-2671, A6-2672, A6-2674, A6-2675, A6-2676, A6-2677, A6-2678, A6-2683, A6-3807, A6-3808, A6-3809, A6-3810, A6-4105, A6-5656, A6-5657, A6-5659, A6-5660, A6-5661, A6-5662, A6-5664, A6-5665, A6-5666, A6-5667, A6-6137, A6-6138, A6-6140, A6-6141, A6-6142, A6-6648, A6-6649, A6-6650, A6-6651, A6-6652, A6-6653, A6-6654, A6-6780, A6-6781, A6-6782, AA-3489, AA-3492, AA-3496, AA-3502, AA-3510, AA-3511, AA-3514, AA-3516, AA-3517, AA-3518, AA-3519, AA-3520, AA-3521, AA-3522, AA-3524, AA-3525, AA-3526, AA-3527, AA-3529, AA-3531, AA-3532, AA-3534, AA-3538, AA-3542, AA-3543, AA-3544, AA-3548, AA-3549, AA-3552, AA-3553, AA-3554, AA-3555, AA-3556, AA-3558, AA-3560, AA-3561, AA-3562, AA-3655, AA-3660, AA-3662, AA-3663, AA-3664, AA-3666, AA-3667, AA-3672, AA-3673, AA-3678, AA-3679, AA-3680, AA-3681, AA-3684, AA-3685, AA-3688, AA-3692, AA-3693, AA-3695, AA-3696, AA-3697, AA-3710, AA-3712, AA-3713, AA-3715, AA-3811, AA-3812, AA-3814, AA-3815, AA-3818, AA-3819, AA-3821, AA-3831, AA-3833, AA-3837, AA-3842, AA-3844, AA-3845, AA-3846, AA-3848, AA-3850, AA-3851, AA-3852, AA-3854, AA-3855, AA-3856, AA-3858, AA-3860, AA-3861, AA-3864, AA-3866, AA-3867, AA-3869, AA-3870, AA-3872, AA-3875, AA-3877, AA-3930, AA-3939, AA-3941, AA-3947, AA-3949, AA-3950, AA-3952, AA-3955, AA-3956, AA-3966, AA-3968, AA-3971, AA-3972, AA-3973, AA-3975, AA-3977, AA-3979, AA-3980, AA-3982, AA-3984, AA-3986, AA-3989, AA-3994, AA-A004, AA-A00A, AA-A00D, AA-A00E, AA-A00F, AA-A00J, AA-A00K, AA-A00L, AA-A00N, AA-A00O, AA-A00Q, AA-A00R, AA-A00U, AA-A00W, AA-A00Z, AA-A010, AA-A017, AA-A01D, AA-A01F, AA-A01G, AA-A01I, AA-A01K, AA-A01P, AA-A01Q, AA-A01R, AA-A01S, AA-A01T, AA-A01V, AA-A01X, AA-A01Z, AA-A022, AA-A024, AA-A029, AA-A02F, AA-A02H, AA-A02J, AA-A02K, AA-A02O, AA-A02W, AA-A02Y, AA-A03F, AA-A03J, AD-5900, AD-6548, AD-6888, AD-6889, AD-6890, AD-6895, AD-6899, AD-6901, AD-6963, AD-6964, AD-6965, AF-2687, AF-2689, AF-2691, AF-2692, AF-2693, AF-3400, AF-3913, AF-4110, AF-5654, AF-6136, AF-6655, AF-6672, AG-3574, AG-3575, AG-3578, AG-3580, AG-3581, AG-3582, AG-3583, AG-3584, AG-3586, AG-3587, AG-3593, AG-3594, AG-3598, AG-3599, AG-3600, AG-3601, AG-3602, AG-3605, AG-3608, AG-3609, AG-3611, AG-3612, AG-3726, AG-3727, AG-3731, AG-3732, AG-3742, AG-3878, AG-3881, AG-3882, AG-3883, AG-3885, AG-3887, AG-3890, AG-3892, AG-3893, AG-3894, AG-3896, AG-3898, AG-3901, AG-3902, AG-3909, AG-3999, AG-4001, AG-4005, AG-4007, AG-4008, AG-4015, AG-A002, AG-A008, AG-A00C, AG-A00H, AG-A00Y, AG-A011, AG-A014, AG-A015, AG-A016, AG-A01L, AG-A01W, AG-A01Y, AG-A020, AG-A025, AG-A026, AG-A02G, AG-A02N, AG-A02X, AG-A032, AG-A036, AH-6544, AH-6547, AH-6549, AH-6643, AH-6644, AM-5820, AM-5821, AU-3779, AU-6004, AY-4070, AY-4071, AY-5543, AY-6196, AY-6197, AY-6386, AZ-4315, AZ-4323, AZ-4615, AZ-4616, AZ-4681, AZ-4682, AZ-5403, AZ-5407, AZ-6598, AZ-6599, AZ-6600, AZ-6601, AZ-6603, AZ-6605, AZ-6606, AZ-6607, AZ-6608, CA-5254, CA-5255, CA-5796, CA-5797, CA-6715, CA-6716, CA-6717, CA-6718, CA-6719, CI-6619, CI-6620, CI-6621, CI-6622, CI-6624, CK-4947, CK-4948, CK-4950, CK-4952, CK-5912, CK-5913, CK-5914, CK-5915, CK-5916, CK-6746, CK-6747, CK-6748, CK-6751, CL-5917, CL-5918, CM-4743, CM-4744, CM-4746, CM-4747, CM-4748, CM-4750, CM-4752, CM-5341, CM-5344, CM-5348, CM-5349, CM-5860, CM-5861, CM-5862, CM-5863, CM-5864, CM-5868, CM-6161, CM-6162, CM-6163, CM-6164, CM-6165, CM-6166, CM-6167, CM-6168, CM-6169, CM-6170, CM-6171, CM-6172, CM-6674, CM-6675, CM-6676, CM-6677, CM-6678, CM-6679, CM-6680, D5-5537, D5-5538, D5-5539, D5-5540, D5-5541, D5-6529, D5-6531, D5-6532, D5-6533, D5-6534, D5-6535, D5-6536, D5-6537, D5-6538, D5-6539, D5-6540, D5-6541, D5-6898, D5-6920, D5-6922, D5-6923, D5-6924, D5-6926, D5-6927, D5-6928, D5-6929, D5-6930, D5-6931, D5-6932, D5-7000, DC-5337, DC-5869, DC-6155, DC-6157, DC-6158, DC-6160, DC-6681, DC-6682, DC-6683, DM-A0X9, DM-A0XD, DM-A0XF, DM-A1D0, DM-A1D4, DM-A1D6, DM-A1D7, DM-A1D8, DM-A1D9, DM-A1DA, DM-A1DB, DM-A1HA, DM-A1HB, DM-A282, DM-A285, DM-A28C, DM-A28E, DM-A28F, DM-A28G, DM-A28H, DM-A28K, DM-A28M, DT-5265, DY-A0XA, DY-A1DC, DY-A1DD, DY-A1DF, DY-A1DG, DY-A1H8, EF-5830, EI-6506, EI-6507, EI-6508, EI-6510, F4-6459, F4-6460, F4-6461, F4-6463, F4-6569, F4-6570, F4-6703, F4-6704, F4-6805, F4-6806, F4-6807, F4-6808, F4-6809, F4-6854, F4-6855, F4-6856, F4-6857, F5-6464, F5-6465, F5-6571, F5-6702, F5-6811, F5-6812, F5-6813, G4-6293, G4-6294, G4-6295, G4-6297, G4-6298, G4-6299, G4-6302, G4-6303, G4-6304, G4-6306, G4-6307, G4-6309, G4-6310, G4-6311, G4-6314, G4-6315, G4-6317, G4-6320, G4-6321, G4-6322, G4-6323, G4-6586, G4-6588, G4-6625, G4-6626, G4-6628, G5-6235, G5-6641.
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Esophageal Cancer (329 samples):
- •
Source D2 = [
59]. Sample IDs are of the form ESO-*-Tumor, where * is:
0001, 0009, 0013, 0015, 0019, 0023, 0025, 0029, 003, 005, 0053, 0059, 0061, 0067, 007, 0071, 0079, 0103, 0115, 0123, 0125, 0129, 0133, 0149, 0167, 017, 0176, 021, 0255, 027, 0280, 037, 043, 045, 0459, 049, 051, 0590, 075, 077, 083, 085, 0950, 105, 1059, 1060, 107, 1096, 111, 1130, 1133, 114, 1145, 1154, 116, 1163, 117, 118, 119, 120, 122, 130, 131, 135, 137, 139, 141, 1427, 143, 147, 1481, 1488, 151, 152, 153, 155, 157, 159, 1594, 160, 1608, 161, 164, 165, 167, 1670, 169, 171, 173, 1733, 1748, 175, 177, 179, 184, 185, 187, 1872, 189, 191, 2143, 224, 2472, 250, 251, 2536, 327, 408, 409, 512, 536, 539, 555, 580, 582, 601, 610, 632, 640, 669, 682, 683, 708, 718, 720, 721, 732, 752, 805, 837, 838, 859, 864, 866, 874, 887, 913, 916, 931, 963, D76, H01, H63, K08, R61, S41.
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Source T9 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
2H-A9GF, 2H-A9GH, 2H-A9GI, 2H-A9GJ, 2H-A9GK, 2H-A9GL, 2H-A9GM, 2H-A9GN, 2H-A9GO, 2H-A9GQ, 2H-A9GR, IC-A6RE, IC-A6RF, IG-A3I8, IG-A3QL, IG-A3Y9, IG-A3YA, IG-A3YB, IG-A3YC, IG-A4P3, IG-A4QS, IG-A4QT, IG-A50L, IG-A51D, IG-A5B8, IG-A5S3, IG-A625, IG-A6QS, IG-A7DP, IG-A8O2, IG-A97H, IG-A97I, JY-A6F8, JY-A6FA, JY-A6FB, JY-A6FD, JY-A6FE, JY-A6FG, JY-A6FH, JY-A938, JY-A939, JY-A93C, JY-A93D, JY-A93E, JY-A93F, KH-A6WC, L5-A43C, L5-A43E, L5-A43H, L5-A43I, L5-A43J, L5-A43M, L5-A4OE, L5-A4OF, L5-A4OG, L5-A4OH, L5-A4OI, L5-A4OJ, L5-A4OM, L5-A4ON, L5-A4OO, L5-A4OP, L5-A4OQ, L5-A4OR, L5-A4OS, L5-A4OT, L5-A4OU, L5-A4OW, L5-A4OX, L5-A88S, L5-A88T, L5-A88V, L5-A88W, L5-A88Y, L5-A88Z, L5-A891, L5-A893, L5-A8NE, L5-A8NF, L5-A8NG, L5-A8NH, L5-A8NI, L5-A8NJ, L5-A8NK, L5-A8NL, L5-A8NM, L5-A8NN, L5-A8NQ, L5-A8NR, L5-A8NS, L5-A8NT, L5-A8NU, L5-A8NV, L5-A8NW, L7-A56G, L7-A6VZ, LN-A49K, LN-A49L, LN-A49M, LN-A49N, LN-A49O, LN-A49P, LN-A49R, LN-A49S, LN-A49U, LN-A49V, LN-A49W, LN-A49X, LN-A49Y, LN-A4A1, LN-A4A2, LN-A4A3, LN-A4A4, LN-A4A5, LN-A4A6, LN-A4A8, LN-A4A9, LN-A4MQ, LN-A4MR, LN-A5U5, LN-A5U6, LN-A5U7, LN-A7HV, LN-A7HW, LN-A7HX, LN-A7HY, LN-A7HZ, LN-A8HZ, LN-A8I0, LN-A8I1, LN-A9FO, LN-A9FP, LN-A9FQ, LN-A9FR, M9-A5M8, Q9-A6FU, Q9-A6FW, R6-A6DN, R6-A6DQ, R6-A6KZ, R6-A6L4, R6-A6L6, R6-A6XG, R6-A6XQ, R6-A6Y0, R6-A6Y2, R6-A8W5, R6-A8W8, R6-A8WC, R6-A8WG, RE-A7BO, S8-A6BV, S8-A6BW, V5-A7RB, V5-A7RC, V5-A7RE, V5-AASV, V5-AASW, V5-AASX, VR-A8EO, VR-A8EP, VR-A8EQ, VR-A8ER, VR-A8ET, VR-A8EU, VR-A8EW, VR-A8EX, VR-A8EY, VR-A8EZ, VR-A8Q7, VR-AA4D, VR-AA4G, VR-AA7B, VR-AA7D, X8-AAAR, XP-A8T6, XP-A8T7, XP-A8T8, Z6-A8JD, Z6-A8JE, Z6-A9VB, Z6-AAPN, ZR-A9CJ.
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Gastric Cancer (401 samples):
- •
2000362, 31231321, 76629543, 970010, 98748381, 990089, 990097, 990172, 990300, 990396, 990475, 990515, TGH, TWH.
- •
Source W1 = [
61]. Sample IDs are of the form pfg*T, where * is:
001, 002, 003, 005, 006, 007, 008, 009, 010, 011, 014, 015, 016, 017, 018, 019, 020, 021, 022, 024, 025, 029.
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Source T10 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
B7-5816, B7-5818, B7-A5TI, B7-A5TJ, B7-A5TK, B7-A5TN, BR-4183, BR-4184, BR-4186, BR-4187, BR-4188, BR-4190, BR-4191, BR-4194, BR-4195, BR-4197, BR-4199, BR-4200, BR-4201, BR-4205, BR-4253, BR-4255, BR-4256, BR-4257, BR-4259, BR-4261, BR-4263, BR-4264, BR-4265, BR-4267, BR-4271, BR-4273, BR-4276, BR-4277, BR-4278, BR-4279, BR-4280, BR-4281, BR-4283, BR-4284, BR-4286, BR-4288, BR-4291, BR-4292, BR-4294, BR-4298, BR-4357, BR-4361, BR-4362, BR-4363, BR-4366, BR-4368, BR-4369, BR-4370, BR-4371, BR-4375, BR-4376, BR-6452, BR-6453, BR-6454, BR-6455, BR-6456, BR-6457, BR-6458, BR-6563, BR-6564, BR-6565, BR-6566, BR-6705, BR-6706, BR-6707, BR-6709, BR-6801, BR-6802, BR-6803, BR-6852, BR-7196, BR-7197, BR-7703, BR-7704, BR-7707, BR-7715, BR-7716, BR-7717, BR-7722, BR-7723, BR-7851, BR-7901, BR-7957, BR-7958, BR-7959, BR-8058, BR-8059, BR-8060, BR-8077, BR-8078, BR-8080, BR-8081, BR-8284, BR-8285, BR-8286, BR-8289, BR-8291, BR-8295, BR-8296, BR-8297, BR-8360, BR-8361, BR-8363, BR-8364, BR-8365, BR-8366, BR-8367, BR-8368, BR-8369, BR-8370, BR-8371, BR-8372, BR-8373, BR-8380, BR-8381, BR-8382, BR-8384, BR-8483, BR-8484, BR-8485, BR-8486, BR-8487, BR-8588, BR-8589, BR-8590, BR-8591, BR-8592, BR-8676, BR-8677, BR-8678, BR-8679, BR-8680, BR-8682, BR-8683, BR-8686, BR-8687, BR-8690, BR-A44T, BR-A44U, BR-A452, BR-A453, BR-A4CQ, BR-A4CR, BR-A4CS, BR-A4IU, BR-A4IV, BR-A4IY, BR-A4IZ, BR-A4J1, BR-A4J2, BR-A4J4, BR-A4J5, BR-A4J6, BR-A4J7, BR-A4J8, BR-A4PD, BR-A4PE, BR-A4PF, BR-A4QI, BR-A4QL, BR-A4QM, CD-5798, CD-5799, CD-5800, CD-5801, CD-5802, CD-5803, CD-5804, CD-5813, CD-8524, CD-8525, CD-8526, CD-8527, CD-8528, CD-8529, CD-8530, CD-8531, CD-8532, CD-8533, CD-8534, CD-8535, CD-8536, CD-A486, CD-A487, CD-A489, CD-A48A, CD-A48C, CD-A4MG, CD-A4MH, CD-A4MI, CD-A4MJ, CG-4300, CG-4301, CG-4304, CG-4305, CG-4306, CG-4436, CG-4437, CG-4438, CG-4440, CG-4441, CG-4442, CG-4443, CG-4444, CG-4449, CG-4455, CG-4460, CG-4462, CG-4465, CG-4466, CG-4469, CG-4474, CG-4475, CG-4476, CG-4477, CG-5716, CG-5717, CG-5718, CG-5719, CG-5720, CG-5721, CG-5722, CG-5723, CG-5724, CG-5725, CG-5726, CG-5727, CG-5728, CG-5730, CG-5732, CG-5733, CG-5734, D7-5577, D7-5578, D7-5579, D7-6518, D7-6519, D7-6520, D7-6521, D7-6522, D7-6524, D7-6525, D7-6526, D7-6527, D7-6528, D7-6815, D7-6817, D7-6818, D7-6820, D7-6822, D7-8570, D7-8572, D7-8573, D7-8574, D7-8575, D7-8576, D7-8578, D7-8579, D7-A4YT, D7-A4YU, D7-A4YV, D7-A4YX, D7-A4YY, D7-A4Z0, D7-A6ET, D7-A6EV, D7-A6EX, D7-A6EY, D7-A6EZ, D7-A6F0, D7-A6F2, D7-A747, D7-A748, D7-A74A, D7-A74B, EQ-5647, EQ-8122, EQ-A4SO, F1-6177, F1-6874, F1-6875, F1-A448, F1-A72C, FP-7735, FP-7829, FP-7916, FP-7998, FP-8099, FP-8209, FP-8210, FP-8211, FP-8631, FP-A4BE, FP-A4BF, HF-7131, HF-7132, HF-7133, HF-7134, HF-7136, HF-A5NB, HJ-7597, HU-8238, HU-8243, HU-8244, HU-8245, HU-8249, HU-8602, HU-8604, HU-8608, HU-8610, HU-A4G2, HU-A4G3, HU-A4G6, HU-A4G8, HU-A4G9, HU-A4GC, HU-A4GD, HU-A4GF, HU-A4GH, HU-A4GJ, HU-A4GN, HU-A4GP, HU-A4GQ, HU-A4GT, HU-A4GU, HU-A4GX, HU-A4GY, HU-A4H0, HU-A4H2, HU-A4H3, HU-A4H4, HU-A4H5, HU-A4H6, HU-A4H8, HU-A4HB, HU-A4HD, IN-7806, IN-7808, IN-8462, IN-8663, IN-A6RI, IN-A6RJ, IN-A6RL, IN-A6RN, IN-A6RO, IN-A6RP, IN-A6RR, IP-7968, KB-A6F5, KB-A6F7, MX-A5UG, MX-A5UJ, MX-A663, MX-A666, R5-A7O7, RD-A7BS, RD-A7BT, RD-A7BW, RD-A7C1.
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Glioblastoma Multiforme (359 samples):
- •
Source P2 = [
62]. Sample IDs are of the form Br*, where * is:
001X, 018X, 019X, 02X, 03X, 04X, 05X, 06X, 07X, 08X, 102X, 103X, 104X, 10P, 112X, 116X, 117X, 118X, 11P, 128X, 12P, 132X, 133X, 136X, 13X, 143X, 148X, 14X, 15X, 16X, 17X, 20P, 21PT, 229T, 230T, 237T, 238T, 23X, 247T, 248T, 25X, 26X, 27P, 29P, 301T, 302T, 303T, 306T, 401X, 9PT.
- •
Source T11 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
02-0003, 02-0007, 02-0010, 02-0014, 02-0015, 02-0021, 02-0028, 02-0033, 02-0043, 02-0047, 02-0055, 02-0083, 02-0089, 02-0099, 02-0107, 02-0114, 02-0115, 02-2470, 02-2483, 02-2485, 02-2486, 06-0119, 06-0122, 06-0124, 06-0125, 06-0126, 06-0128, 06-0129, 06-0130, 06-0132, 06-0137, 06-0138, 06-0139, 06-0140, 06-0141, 06-0142, 06-0143, 06-0145, 06-0147, 06-0148, 06-0151, 06-0152, 06-0154, 06-0155, 06-0157, 06-0158, 06-0165, 06-0166, 06-0167, 06-0168, 06-0169, 06-0171, 06-0173, 06-0174, 06-0176, 06-0178, 06-0184, 06-0185, 06-0188, 06-0189, 06-0190, 06-0192, 06-0195, 06-0201, 06-0209, 06-0210, 06-0211, 06-0213, 06-0214, 06-0216, 06-0219, 06-0221, 06-0237, 06-0238, 06-0240, 06-0241, 06-0644, 06-0645, 06-0646, 06-0648, 06-0649, 06-0650, 06-0686, 06-0743, 06-0744, 06-0745, 06-0747, 06-0749, 06-0750, 06-0875, 06-0876, 06-0877, 06-0878, 06-0879, 06-0881, 06-0882, 06-0939, 06-1804, 06-1806, 06-2557, 06-2558, 06-2559, 06-2561, 06-2562, 06-2563, 06-2564, 06-2565, 06-2567, 06-2569, 06-2570, 06-5408, 06-5410, 06-5411, 06-5412, 06-5413, 06-5414, 06-5415, 06-5417, 06-5418, 06-5856, 06-5858, 06-5859, 06-6388, 06-6389, 06-6390, 06-6391, 06-6693, 06-6694, 06-6695, 06-6697, 06-6698, 06-6699, 06-6700, 06-6701, 08-0244, 08-0345, 08-0352, 08-0353, 08-0360, 08-0373, 08-0375, 08-0385, 08-0386, 12-0615, 12-0616, 12-0618, 12-0619, 12-0688, 12-0692, 12-0821, 12-1597, 12-3649, 12-3650, 12-3652, 12-3653, 12-5295, 12-5299, 12-5301, 14-0740, 14-0781, 14-0786, 14-0787, 14-0789, 14-0790, 14-0813, 14-0817, 14-0862, 14-0871, 14-1034, 14-1043, 14-1395, 14-1450, 14-1456, 14-1823, 14-1825, 14-1829, 14-2554, 14-3476, 14-4157, 15-0742, 15-1444, 16-0846, 16-0861, 16-1045, 16-1048, 19-1390, 19-1790, 19-2619, 19-2620, 19-2623, 19-2624, 19-2625, 19-2629, 19-2631, 19-4068, 19-5953, 26-1439, 26-1442, 26-5132, 26-5133, 26-5134, 26-5135, 26-5136, 26-5139, 26-6173, 26-6174, 27-1830, 27-1831, 27-1832, 27-1833, 27-1834, 27-1835, 27-1836, 27-1837, 27-1838, 27-2518, 27-2519, 27-2521, 27-2523, 27-2524, 27-2526, 27-2527, 27-2528, 28-1747, 28-1753, 28-2499, 28-2501, 28-2502, 28-2509, 28-2510, 28-2513, 28-2514, 28-5204, 28-5207, 28-5208, 28-5209, 28-5211, 28-5213, 28-5214, 28-5215, 28-5216, 28-5218, 28-5219, 28-5220, 28-6450, 32-1970, 32-1977, 32-1979, 32-1980, 32-1982, 32-1986, 32-1991, 32-2491, 32-2494, 32-2495, 32-2498, 32-2615, 32-2632, 32-2634, 32-2638, 32-4208, 32-4209, 32-4210, 32-4211, 32-4213, 32-4719, 32-5222, 41-2571, 41-2572, 41-2573, 41-2575, 41-3392, 41-3393, 41-3915, 41-4097, 41-5651, 41-6646, 74-6573, 74-6575, 74-6577, 74-6578, 74-6584, 76-4925, 76-4926, 76-4927, 76-4928, 76-4929, 76-4931, 76-4932, 76-4934, 76-4935, 76-6191, 76-6192, 76-6193, 76-6280, 76-6282, 76-6283, 76-6285, 76-6286, 76-6656, 76-6657, 76-6660, 76-6661, 76-6662, 76-6663, 76-6664, 81-5910, 81-5911, 87-5896.
- ⧫
Head and Neck Cancer (591 samples):
- •
139, 266, 325, 347, 388, 478, 91.
- •
HN12PT, HN22PT, HN27PT, HN32PT, HN33PT.
Remaining sample IDs are of the form HN_*-Tumor, where * is:
0-046, 0-064, 00076, 00122, 00190, 00313, 00338, 00361, 00378, 00443, 00466, 00761, 01000, 62237, 62298, 62318, 62338, 62374, 62415, 62417, 62421, 62426, 62469, 62481, 62493, 62505, 62506, 62515, 62532, 62539, 62601, 62602, 62624, 62646, 62652, 62671, 62672, 62686, 62699, 62739, 62740, 62741, 62755, 62756, 62807, 62814, 62825, 62832, 62854, 62857_2, 62860, 62861, 62863, 62897, 62921, 62926, 62984, 62996, 63007, 63021, 63027, 63039, 63048, 63058, 63080, 63081, 63095, 63114.
- •
Source T12 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
BA-4074, BA-4075, BA-4076, BA-4077, BA-4078, BA-5149, BA-5151, BA-5152, BA-5153, BA-5555, BA-5556, BA-5557, BA-5558, BA-5559, BA-6868, BA-6869, BA-6870, BA-6871, BA-6872, BA-6873, BA-7269, BA-A4IF, BA-A4IG, BA-A4IH, BA-A4II, BA-A6D8, BA-A6DA, BA-A6DB, BA-A6DD, BA-A6DE, BA-A6DF, BA-A6DG, BA-A6DI, BA-A6DJ, BA-A6DL, BB-4217, BB-4223, BB-4224, BB-4225, BB-4227, BB-4228, BB-7861, BB-7862, BB-7863, BB-7864, BB-7866, BB-7870, BB-7871, BB-7872, BB-8596, BB-8601, BB-A5HU, BB-A5HY, BB-A5HZ, BB-A6UM, BB-A6UO, C9-A47Z, C9-A480, CN-4723, CN-4725, CN-4726, CN-4727, CN-4728, CN-4729, CN-4730, CN-4731, CN-4733, CN-4734, CN-4735, CN-4736, CN-4737, CN-4738, CN-4739, CN-4740, CN-4741, CN-4742, CN-5355, CN-5356, CN-5358, CN-5359, CN-5360, CN-5361, CN-5363, CN-5364, CN-5365, CN-5366, CN-5367, CN-5369, CN-5370, CN-5373, CN-5374, CN-6010, CN-6011, CN-6012, CN-6013, CN-6016, CN-6017, CN-6018, CN-6019, CN-6020, CN-6021, CN-6022, CN-6023, CN-6024, CN-6988, CN-6989, CN-6992, CN-6994, CN-6995, CN-6996, CN-6997, CN-6998, CN-A497, CN-A498, CN-A499, CN-A49A, CN-A49B, CN-A49C, CN-A63T, CN-A63U, CN-A63V, CN-A63W, CN-A63Y, CN-A640, CN-A641, CN-A642, CN-A6UY, CN-A6V1, CN-A6V3, CN-A6V6, CN-A6V7, CQ-5323, CQ-5324, CQ-5325, CQ-5326, CQ-5327, CQ-5329, CQ-5330, CQ-5331, CQ-5332, CQ-5333, CQ-5334, CQ-6218, CQ-6219, CQ-6220, CQ-6221, CQ-6222, CQ-6223, CQ-6224, CQ-6225, CQ-6227, CQ-6228, CQ-6229, CQ-7063, CQ-7064, CQ-7065, CQ-7067, CQ-7068, CQ-7069, CQ-7071, CQ-7072, CQ-A4C6, CQ-A4C7, CQ-A4C9, CQ-A4CB, CQ-A4CD, CQ-A4CE, CQ-A4CG, CQ-A4CH, CQ-A4CI, CR-5243, CR-5247, CR-5248, CR-5249, CR-5250, CR-6467, CR-6470, CR-6471, CR-6472, CR-6473, CR-6474, CR-6477, CR-6478, CR-6480, CR-6481, CR-6482, CR-6484, CR-6487, CR-6488, CR-6491, CR-6492, CR-6493, CR-7364, CR-7365, CR-7367, CR-7368, CR-7369, CR-7370, CR-7371, CR-7372, CR-7373, CR-7374, CR-7376, CR-7377, CR-7379, CR-7380, CR-7382, CR-7383, CR-7385, CR-7386, CR-7388, CR-7389, CR-7390, CR-7391, CR-7392, CR-7393, CR-7394, CR-7395, CR-7397, CR-7398, CR-7399, CR-7401, CR-7402, CR-7404, CV-5430, CV-5431, CV-5432, CV-5434, CV-5435, CV-5436, CV-5439, CV-5440, CV-5441, CV-5442, CV-5443, CV-5444, CV-5966, CV-5970, CV-5971, CV-5973, CV-5976, CV-5977, CV-5978, CV-5979, CV-6003, CV-6433, CV-6436, CV-6441, CV-6933, CV-6934, CV-6935, CV-6936, CV-6937, CV-6938, CV-6939, CV-6940, CV-6941, CV-6942, CV-6943, CV-6945, CV-6948, CV-6950, CV-6951, CV-6952, CV-6953, CV-6954, CV-6955, CV-6956, CV-6959, CV-6960, CV-6961, CV-6962, CV-7089, CV-7090, CV-7091, CV-7095, CV-7097, CV-7099, CV-7100, CV-7101, CV-7102, CV-7103, CV-7104, CV-7177, CV-7178, CV-7180, CV-7183, CV-7235, CV-7236, CV-7238, CV-7242, CV-7243, CV-7245, CV-7247, CV-7248, CV-7250, CV-7252, CV-7253, CV-7254, CV-7255, CV-7261, CV-7263, CV-7406, CV-7407, CV-7409, CV-7410, CV-7411, CV-7413, CV-7414, CV-7415, CV-7416, CV-7418, CV-7421, CV-7422, CV-7423, CV-7424, CV-7425, CV-7427, CV-7429, CV-7430, CV-7432, CV-7433, CV-7434, CV-7435, CV-7437, CV-7438, CV-7440, CV-7446, CV-7568, CV-A45O, CV-A45P, CV-A45Q, CV-A45R, CV-A45T, CV-A45U, CV-A45V, CV-A45W, CV-A45X, CV-A45Y, CV-A45Z, CV-A460, CV-A461, CV-A463, CV-A464, CV-A465, CV-A468, CV-A6JD, CV-A6JE, CV-A6JM, CV-A6JN, CV-A6JO, CV-A6JT, CV-A6JU, CV-A6JY, CV-A6JZ, CV-A6K0, CV-A6K1, CV-A6K2, CX-7082, CX-7085, CX-7086, CX-7219, CX-A4AQ, D6-6515, D6-6516, D6-6517, D6-6823, D6-6824, D6-6825, D6-6826, D6-6827, D6-8568, D6-8569, D6-A4Z9, D6-A4ZB, D6-A6EK, D6-A6EM, D6-A6EN, D6-A6EO, D6-A6EP, D6-A6EQ, D6-A6ES, D6-A74Q, DQ-5624, DQ-5625, DQ-5629, DQ-5630, DQ-5631, DQ-7588, DQ-7589, DQ-7590, DQ-7591, DQ-7592, DQ-7593, DQ-7594, DQ-7595, DQ-7596, F7-7848, F7-8489, F7-A50G, F7-A50I, F7-A50J, F7-A61S, F7-A61V, F7-A61W, F7-A620, F7-A622, F7-A623, F7-A624, H7-7774, H7-8501, H7-A6C4, H7-A6C5, H7-A76A, HD-7229, HD-7753, HD-7754, HD-7831, HD-7832, HD-7917, HD-8224, HD-8314, HD-8634, HD-8635, HD-A4C1, HD-A633, HD-A634, HD-A6HZ, HD-A6I0, HL-7533, IQ-7630, IQ-7631, IQ-7632, IQ-A61E, IQ-A61G, IQ-A61H, IQ-A61I, IQ-A61J, IQ-A61K, IQ-A61L, IQ-A61O, IQ-A6SG, IQ-A6SH, KU-A66S, KU-A66T, KU-A6H7, KU-A6H8, MT-A51W, MT-A51X, MT-A67A, MT-A67D, MT-A67F, MT-A67G, MT-A7BN, MZ-A5BI, MZ-A6I9, MZ-A7D7, P3-A5Q6, P3-A5QA, P3-A5QE, P3-A5QF, P3-A6SW, P3-A6SX, P3-A6T0, P3-A6T2, P3-A6T3, P3-A6T4, P3-A6T5, P3-A6T6, P3-A6T7, P3-A6T8, QK-A64Z, QK-A652, QK-A6IF, QK-A6IG, QK-A6IH, QK-A6II, QK-A6IJ, QK-A6V9, QK-A6VB, QK-A6VC, RS-A6TO, RS-A6TP, T2-A6WX, T2-A6WZ, T2-A6X0, T2-A6X2, TN-A7HI, TN-A7HJ, TN-A7HL, UF-A718, UF-A719, UF-A71A, UF-A71B, UF-A71D, UF-A71E, UF-A7J9, UF-A7JA, UF-A7JC, UF-A7JD, UF-A7JF, UF-A7JH, UF-A7JJ, UF-A7JK, UF-A7JO, UF-A7JS, UF-A7JT, UF-A7JV, UP-A6WW, WA-A7GZ, WA-A7H4.
- ⧫
Liver Cancer (452 samples):
- •
Source S5 = [
40]. Sample IDs are of the form BCB*, where * is:
109T, 111T, 151T, 157T, 167T, 231T, 301T, 307T, 325T.
Additional sample IDs are of the form BCM*, where * is:
229T, 257T, 265T, 269T, 275T, 321T, 325T, 329T, 337T, 339T, 371T, 375T, 397T, 399T, 423T, 439T, 455T, 483T, 489T, 501T, 529T, 531T, 543T, 545T, 565T, 567T, 617T, 643T, 671T, 683T, 689T, 695T, 703T, 711T, 723T, 735T, 739T, 759T, 769T, 783T, 791T.
Remaining sample IDs are of the form CHC*, where * is:
051T, 059T, 060T, 097T, 1010T, 1028T, 1035T, 1040T, 1041T, 1044T, 1052T, 1053T, 1055T, 1060T, 1061T, 1062T, 1065T, 1079T, 1081T, 1082T, 1083T, 1085T, 1089T, 1091T, 1097T, 1098T, 1137T, 1148T, 1152T, 1154T, 1162T, 1177T, 1180T, 1182T, 1183T, 1185T, 1186T, 1190T, 1191T, 1192T, 1201T, 1205T, 1207T, 1209T, 1210T, 1211T, 121T, 1530T, 1531T, 1534T, 1539T, 1545T, 1556T, 155T, 1566T, 1568T, 1569T, 1591T, 1592T, 1594T, 1595T, 1596T, 1597T, 1598T, 1600T, 1601T, 1602T, 1603T, 1604T, 1611T, 1616T, 1624T, 1626T, 1629T, 1700T, 1704T, 1708T, 1712T, 1714T, 1715T, 1717T, 1719T, 1720T, 1725T, 1731T, 1732T, 1734T, 1736T, 1737T, 1738T, 1739T, 1741T, 1742T, 1743T, 1744T, 1745T, 1746T, 1747T, 1749T, 1750T, 1751T, 1753T, 1754T, 1756T, 1757T, 1763T, 1774T, 1775T, 1915T, 197T, 2029T, 2034T, 2039Tbis, 2043T, 2048T, 2052T, 205T, 2098T, 2099T, 2103T, 2110Tbis, 2111T, 2112T, 2113T, 2115T, 2127T, 2128T, 2134T, 2141T, 218T, 2200T, 2202T, 2206T, 2208T, 2211T, 2213T, 2215T, 2216T, 2321T, 2351T, 2352T, 2358T, 2362T, 253T, 258T, 301T, 302T, 303T, 304T, 306T, 307T, 313T, 314T, 320T, 322T, 326T, 327T, 361TA, 429T, 432T, 433T, 434T, 437T, 451T, 465T, 469T, 510T, 609T, 614T, 703T, 734T, 736T, 789T, 793T, 794T, 796T, 798T, 799T, 801T, 805T, 879T, 884T, 889T, 891T, 892T, 896T, 898T, 902T, 909T, 912T, 917T, 923T, 961T.
- •
P47, P48, P51, P52, P55, P56, P929.
- •
Source T13 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
BC-4073, BC-A10Q, BC-A10R, BC-A10S, BC-A10T, BC-A10U, BC-A10W, BC-A10X, BC-A10Y, BC-A10Z, BC-A110, BC-A112, BC-A216, BC-A217, BC-A3KF, BC-A3KG, BC-A5W4, BC-A69H, BC-A69I, BD-A2L6, BD-A3EP, BD-A3ER, BW-A5NO, BW-A5NP, BW-A5NQ, CC-5258, CC-5259, CC-5260, CC-5261, CC-5262, CC-5263, CC-5264, CC-A123, CC-A1HT, CC-A3M9, CC-A3MA, CC-A3MB, CC-A3MC, CC-A5UC, CC-A5UD, CC-A5UE, CC-A7IF, CC-A7IG, CC-A7IH, CC-A7II, CC-A7IJ, CC-A7IK, CC-A7IL, DD-A113, DD-A114, DD-A115, DD-A116, DD-A118, DD-A119, DD-A11A, DD-A11B, DD-A11C, DD-A11D, DD-A1E9, DD-A1EA, DD-A1EB, DD-A1EC, DD-A1ED, DD-A1EF, DD-A1EG, DD-A1EH, DD-A1EI, DD-A1EJ, DD-A1EK, DD-A1EL, DD-A39V, DD-A39W, DD-A39X, DD-A39Y, DD-A39Z, DD-A3A0, DD-A3A1, DD-A3A2, DD-A3A3, DD-A3A4, DD-A3A5, DD-A3A6, DD-A3A7, DD-A3A8, DD-A3A9, DD-A4NA, DD-A4NB, DD-A4ND, DD-A4NE, DD-A4NF, DD-A4NG, DD-A4NH, DD-A4NI, DD-A4NJ, DD-A4NK, DD-A4NL, DD-A4NN, DD-A4NO, DD-A4NP, DD-A4NQ, DD-A4NR, DD-A4NS, DD-A4NV, DD-A73A, DD-A73B, DD-A73C, DD-A73D, DD-A73E, DD-A73F, DD-A73G, ED-A459, ED-A4XI, ED-A5KG, ED-A627, ED-A66X, ED-A66Y, ED-A7PX, ED-A7PY, ED-A7PZ, ED-A7XO, ED-A7XP, ED-A82E, EP-A12J, EP-A26S, EP-A2KA, EP-A2KB, EP-A2KC, EP-A3JL, EP-A3RK, ES-A2HS, ES-A2HT, FV-A23B, FV-A2QQ, FV-A2QR, FV-A3I0, FV-A3I1, FV-A3R2, FV-A3R3, FV-A495, FV-A496, FV-A4ZP, FV-A4ZQ, G3-A25S, G3-A25T, G3-A25U, G3-A25V, G3-A25W, G3-A25Y, G3-A25Z, G3-A3CG, G3-A3CH, G3-A3CI, G3-A3CJ, G3-A3CK, G3-A5SI, G3-A5SJ, G3-A5SK, G3-A5SL, G3-A5SM, G3-A6UC, G3-A7M5, G3-A7M6, G3-A7M7, G3-A7M8, G3-A7M9, GJ-A6C0, HP-A5MZ, HP-A5N0, K7-A5RF, K7-A5RG, K7-A6G5, KR-A7K0, KR-A7K2, KR-A7K7, KR-A7K8, LG-A6GG, MI-A75C, MI-A75E, MI-A75G, MI-A75H, MI-A75I, MR-A520, NI-A4U2, O8-A75V, PD-A5DF, QA-A7B7, RC-A6M3, RC-A6M4, RC-A6M5, RC-A6M6, RC-A7S9, RC-A7SB, RC-A7SF, RC-A7SK, RG-A7D4, T1-A6J8, UB-A7MA, UB-A7MB, UB-A7MC, UB-A7MD, UB-A7ME, UB-A7MF.
- ⧫
Lung Cancer (1018 samples):
- •
16600, 16608, 16628, 16632, 16648, 16660, 16668, 16678, 16686, 16724, 16802, 16814, 16835, 16857, 16949, 17042, 17055, 17156, 17174, 17210, 17218, 17226, 17242, 17268, 17290, 17308, 17733, 17746, 17759, 17763.
- •
113368, 134398, 134413, 134417, 134421, 134426, 134427, 134430, 2334187, 2334188, 2334189, 2334191, 2334193, 2334195, 2334196, 2334199, 2334201, 2334202, 585203, 585205, 585208, 585210, 585223, 585258, 585260, 585265, 585267, 585270, 585272, 585276, 631052, 631056, 631060, 631064, 631076, 631084, 631092, 98687, 98711, 98735.
- •
H1672, H2171, S00022, S00050, S00356, S00472, S00501, S00539, S00827, S00830, S00833, S00836, S00837, S00841, S00932, S00933, S00935, S00936, S00943, S00944, S00945, S00946, S00947, S01366, S01453, S01494, S01512, S01563, S01728.
- •
Source S6 = [
69]. Sample IDs are of the form LC_*, where * is:
C1, C10, C11, C13, C14, C15, C17, C18, C19, C2, C20, C21, C22, C23, C24, C25, C26, C27, C28, C29, C30, C32, C33, C34, C35, C36, C4, C5, C6, C7, C8, C9, S10, S11, S12, S13, S14, S15, S16, S17, S18, S19, S2, S20, S21, S23, S24, S25, S27, S28, S29, S3, S31, S32, S34, S35, S37, S38, S39, S4, S40, S41, S42, S43, S44, S45, S46, S47, S48, S49, S5, S51, S6, S8, S9.
- •
Source I1 = [
70]. Sample IDs are of the form LUAD.**.Tumor, where ** is (below * stands for NYU, e.g., *1021 = NYU1021 and the full sample ID is LUAD.NYU1021.Tumor):
5O6B5, 74TBW, B00416, B00523, B00859, B00915, B01102, B01145, B01811, B01970, B02077, B02216, B02477, B02515, B02594, D00147, D01278, D01603, D01751, D02085, D02185, E00163, E00443, E00897, E00918, F00018, F00057, F00089, F00121, F00134, F00162, F00170, F00257, F00282, F00365, F00368, GU4I3, LC15C, LIP77, *1021, *1026, *1027, *1051S, *1093, *1096, *1101, *1142, *1177, *1195, *1210, *1219, *160, *184, *195, *201, *213, *252, *259, *263, *282, *284, *287, *315, *330, *408, *508, *574S, *575, *584S, *608, *627, *669, *689, *696, *704, *739, *796, *802, *803, *846, *847, *848, *947, *994, QCHM7, QJN9L, S00484, S00486, S00499, S01304, S01306, S01315, S01320, S01354, S01357, S01362, S01373, S01409, S01413, S01482, TLLGS, UF7HM, VUMN6, YINHD, YKER9.
Additional sample IDs are of the form LUAD.CHTN.*.Tumor, where * is:
3090346, 3090415, 3090416, 4090680, MAD04.00674, MAD06.00490, MAD06.00668, MAD06.00678, MAD08.00104, Z4716A.
Further sample IDs are of the form LUAD.RT.*.Tumor, where * is:
S01477, S01487, S01699, S01700, S01702, S01703, S01709, S01711, S01721, S01769, S01770, S01771, S01774, S01777, S01808, S01810, S01813, S01818, S01831, S01832, S01840, S01852, S01856, S01866.
Remaining sample IDs are of the form LUAD_*.Tumor, where * is:
E00522, E00565, E00623, E00703, E00945, E01047, E01086, E01147, E01166, E01319, E01419.
- •
Source T14 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA.*, where * is:
05.4244, 05.4249, 05.4250, 05.4382, 05.4384, 05.4389, 05.4390, 05.4395, 05.4396, 05.4397, 05.4398, 05.4402, 05.4403, 05.4405, 05.4410, 05.4415, 05.4417, 05.4418, 05.4420, 05.4422, 05.4424, 05.4425, 05.4426, 05.4427, 05.4430, 05.4432, 05.4433, 05.4434, 05.5420, 05.5423, 05.5425, 05.5428, 05.5429, 05.5715, 17.Z000, 17.Z001, 17.Z002, 17.Z003, 17.Z004, 17.Z005, 17.Z007, 17.Z008, 17.Z009, 17.Z010, 17.Z011, 17.Z012, 17.Z013, 17.Z014, 17.Z015, 17.Z016, 17.Z017, 17.Z018, 17.Z019, 17.Z020, 17.Z021, 17.Z022, 17.Z023, 17.Z025, 17.Z026, 17.Z027, 17.Z028, 17.Z030, 17.Z031, 17.Z032, 17.Z033, 17.Z035, 17.Z036, 17.Z037, 17.Z040, 17.Z041, 17.Z042, 17.Z043, 17.Z044, 17.Z045, 17.Z046, 17.Z047, 17.Z048, 17.Z049, 17.Z050, 17.Z051, 17.Z052, 17.Z053, 17.Z054, 17.Z055, 17.Z056, 17.Z057, 17.Z058, 17.Z059, 17.Z060, 17.Z061, 17.Z062, 18.3406, 18.3407, 18.3408, 18.3409, 18.3410, 18.3411, 18.3412, 18.3414, 18.3415, 18.3416, 18.3417, 18.3419, 18.3421, 18.4083, 18.4086, 18.4721, 18.5592, 18.5595, 21.1070, 21.1071, 21.1076, 21.1077, 21.1078, 21.1081, 21.5782, 21.5784, 21.5786, 21.5787, 22.0944, 22.1002, 22.1011, 22.1012, 22.1016, 22.4591, 22.4593, 22.4595, 22.4599, 22.4601, 22.4604, 22.4607, 22.4613, 22.5471, 22.5472, 22.5473, 22.5474, 22.5477, 22.5478, 22.5480, 22.5482, 22.5485, 22.5489, 22.5491, 22.5492, 33.4532, 33.4533, 33.4538, 33.4547, 33.4566, 33.4582, 33.4583, 33.4586, 33.6737, 34.2596, 34.2600, 34.2608, 34.5231, 34.5232, 34.5234, 34.5236, 34.5239, 34.5240, 34.5927, 34.5928, 34.5929, 35.3615, 35.3621, 35.4122, 35.4123, 35.5375, 37.3783, 37.3789, 37.4133, 37.4135, 37.4141, 37.5819, 38.4625, 38.4626, 38.4627, 38.4628, 38.4629, 38.4630, 38.4631, 38.4632, 38.6178, 38.7271, 38.A44F, 39.5016, 39.5019, 39.5021, 39.5022, 39.5024, 39.5027, 39.5028, 39.5029, 39.5030, 39.5031, 39.5035, 39.5036, 39.5037, 39.5039, 43.2578, 43.3394, 43.3920, 43.5668, 43.6143, 43.6647, 43.6770, 43.6771, 44.2655, 44.2656, 44.2657, 44.2659, 44.2661, 44.2662, 44.2665, 44.2666, 44.2668, 44.3396, 44.3398, 44.3918, 44.3919, 44.4112, 44.5643, 44.5644, 44.5645, 44.6144, 44.6145, 44.6146, 44.6147, 44.6148, 44.6774, 44.6775, 44.6776, 44.6777, 44.6778, 44.6779, 44.7659, 44.7660, 44.7661, 44.7662, 44.7667, 44.7669, 44.7670, 44.7671, 44.7672, 44.8117, 44.8119, 44.8120, 44.A479, 44.A47A, 44.A47B, 44.A47F, 44.A47G, 44.A4SS, 44.A4SU, 46.3765, 46.3767, 46.3768, 46.3769, 46.6025, 46.6026, 49.4486, 49.4487, 49.4488, 49.4490, 49.4494, 49.4501, 49.4505, 49.4506, 49.4507, 49.4510, 49.4512, 49.4514, 49.6742, 49.6743, 49.6744, 49.6745, 49.6761, 49.6767, 50.5044, 50.5045, 50.5049, 50.5051, 50.5055, 50.5066, 50.5068, 50.5072, 50.5930, 50.5931, 50.5932, 50.5933, 50.5935, 50.5936, 50.5939, 50.5941, 50.5942, 50.5944, 50.5946, 50.6590, 50.6591, 50.6592, 50.6593, 50.6594, 50.6595, 50.6597, 50.6673, 50.7109, 50.8457, 50.8459, 50.8460, 51.4079, 51.4080, 51.4081, 53.7624, 53.7626, 53.7813, 53.A4EZ, 55.1592, 55.1594, 55.1595, 55.1596, 55.5899, 55.6543, 55.6642, 55.6712, 55.6968, 55.6969, 55.6970, 55.6971, 55.6972, 55.6975, 55.6978, 55.6979, 55.6980, 55.6981, 55.6982, 55.6983, 55.6984, 55.6985, 55.6986, 55.6987, 55.7227, 55.7281, 55.7283, 55.7284, 55.7570, 55.7573, 55.7574, 55.7576, 55.7724, 55.7725, 55.7726, 55.7727, 55.7728, 55.7815, 55.7816, 55.7903, 55.7907, 55.7910, 55.7911, 55.7913, 55.7914, 55.7994, 55.7995, 55.8085, 55.8087, 55.8089, 55.8090, 55.8091, 55.8092, 55.8094, 55.8096, 55.8097, 55.8203, 55.8204, 55.8205, 55.8206, 55.8207, 55.8208, 55.8299, 55.8301, 55.8302, 55.8505, 55.8506, 55.8507, 55.8508, 55.8510, 55.8511, 55.8512, 55.8513, 55.8514, 55.8614, 55.8615, 55.8616, 55.8619, 55.8620, 55.8621, 55.A48X, 55.A48Y, 55.A48Z, 55.A490, 55.A491, 55.A492, 55.A493, 55.A494, 55.A4DF, 55.A4DG, 56.1622, 56.5897, 56.5898, 56.6545, 56.6546, 60.2698, 60.2707, 60.2708, 60.2709, 60.2710, 60.2711, 60.2712, 60.2713, 60.2715, 60.2719, 60.2720, 60.2721, 60.2722, 60.2723, 60.2724, 60.2725, 60.2726, 62.8394, 62.8395, 62.8397, 62.8398, 62.8399, 62.8402, 62.A46O, 62.A46P, 62.A46R, 62.A46S, 62.A46U, 62.A46V, 62.A46Y, 62.A470, 62.A471, 62.A472, 63.5128, 63.5131, 63.6202, 64.1676, 64.1677, 64.1678, 64.1679, 64.1680, 64.1681, 64.5774, 64.5775, 64.5778, 64.5779, 64.5781, 64.5815, 66.2727, 66.2734, 66.2742, 66.2744, 66.2754, 66.2755, 67.3770, 67.3771, 67.3772, 67.3773, 67.3774, 67.4679, 67.6215, 67.6216, 67.6217, 69.7760, 69.7761, 69.7763, 69.7764, 69.7765, 69.7973, 69.7974, 69.7978, 69.7979, 69.7980, 69.8253, 69.8254, 69.8255, 69.A59K, 71.6725, 71.8520, 73.4658, 73.4659, 73.4662, 73.4666, 73.4668, 73.4670, 73.4675, 73.4676, 73.4677, 73.7498, 73.7499, 75.5122, 75.5125, 75.5126, 75.5146, 75.5147, 75.6203, 75.6205, 75.6206, 75.6207, 75.6211, 75.6212, 75.6214, 75.7025, 75.7027, 75.7030, 75.7031, 78.7143, 78.7145, 78.7146, 78.7147, 78.7148, 78.7149, 78.7150, 78.7152, 78.7153, 78.7154, 78.7155, 78.7156, 78.7158, 78.7159, 78.7160, 78.7161, 78.7162, 78.7163, 78.7166, 78.7167, 78.7220, 78.7535, 78.7536, 78.7537, 78.7539, 78.7540, 78.7542, 78.7633, 78.8640, 78.8648, 78.8655, 78.8660, 78.8662, 80.5607, 80.5608, 80.5611, 83.5908, 86.6562, 86.6851, 86.7701, 86.7711, 86.7713, 86.7714, 86.7953, 86.7954, 86.7955, 86.8054, 86.8055, 86.8056, 86.8073, 86.8074, 86.8075, 86.8076, 86.8278, 86.8279, 86.8280, 86.8281, 86.8358, 86.8359, 86.8585, 86.8668, 86.8669, 86.8671, 86.8672, 86.8673, 86.8674, 86.A456, 86.A4D0, 86.A4JF, 86.A4P7, 86.A4P8, 91.6828, 91.6829, 91.6830, 91.6831, 91.6835, 91.6836, 91.6840, 91.6847, 91.6848, 91.6849, 91.7771, 91.8496, 91.8497, 91.8499, 91.A4BC, 91.A4BD, 93.7347, 93.7348, 93.8067, 93.A4JN, 93.A4JO, 93.A4JP, 93.A4JQ, 95.7039, 95.7043, 95.7562, 95.7567, 95.7944, 95.7947, 95.7948, 95.8039, 95.8494, 95.A4VK, 95.A4VN, 95.A4VP, 97.7546, 97.7547, 97.7552, 97.7553, 97.7554, 97.7937, 97.7938, 97.7941, 97.8171, 97.8172, 97.8174, 97.8175, 97.8176, 97.8177, 97.8179, 97.8547, 97.8552, 97.A4LX, 97.A4M0, 97.A4M1, 97.A4M2, 97.A4M3, 97.A4M5, 97.A4M6, 97.A4M7, 99.7458, 99.8025, 99.8028, 99.8032, 99.8033, J2.8192, J2.8194, J2.A4AD, J2.A4AE, J2.A4AG, L4.A4E5, L4.A4E6, L9.A443, L9.A444, MN.A4N1, MN.A4N4, MN.A4N5, MP.A4SV, MP.A4SW, MP.A4SY, MP.A4T2, MP.A4T4, MP.A4T6, MP.A4T7, MP.A4T8, MP.A4T9, MP.A4TA, MP.A4TC, MP.A4TD, MP.A4TE, MP.A4TF, MP.A4TH, MP.A4TI, MP.A4TK, MP.A5C7, NJ.A4YF, NJ.A4YG, NJ.A4YI, NJ.A4YP, NJ.A4YQ, NJ.A55A, NJ.A55O, NJ.A55R, O1.A52J.
- ⧫
Melanoma (594 samples):
- •
A02, A06, D05, D14, D35, D36, D41, D49.
- •
COLO-829.
- •
Source B1 = [
73]. Sample IDs are of the form ME*-Tumor, where * is:
001, 002, 009, 010, 011, 012, 014, 015, 016, 017, 018, 020, 021, 024, 029, 030, 032, 033, 034, 035, 037, 041, 043, 044, 045, 048, 049, 050.
Remaining sample IDs are:
Mel-BRAFi-03-Tumor, Mel_BRAFi_02_PRE-Tumor.
- •
Source A2 = [
32]. Sample IDs are of the form PD*, where * is:
10020a, 10021a, 10022a, 9024a2, 9024b, 9025a, 9025b, 9026a, 9027a, 9027b, 9028a, 9028b, 9029a, 9030a, 9031a, 9032a, 9033a.
- •
Source H3 = [
74]. Sample IDs are of the form SKCM-*-Tumor, where * is:
13447, 13456, 13463, 13468, 13473, 13531, 13537, 13543, 13549, 13560, 13561, 13567, 13575, 13591, 13600.
Additional sample IDs are of the form SKCM-JWCI-*-Tumor, where * is:
14, 27, WGS-1, WGS-11, WGS-12, WGS-13, WGS-15, WGS-18, WGS-19, WGS-2, WGS-20, WGS-21, WGS-22, WGS-23, WGS-24, WGS-25, WGS-26, WGS-29, WGS-3, WGS-32, WGS-33, WGS-34, WGS-35, WGS-36, WGS-37, WGS-38, WGS-39, WGS-4, WGS-42, WGS-43, WGS-5, WGS-6, WGS-7, WGS-8.
Further sample IDs are of the form SKCM-Ma-Mel-*-Tumor, where * is:
04, 05, 08a, 102, 103b, 105, 107, 108, 114, 119, 120, 122, 123, 15, 16, 19, 27, 28, 35, 36, 37, 48, 53, 54a, 55, 59, 62, 63, 65, 67, 71, 76, 79, 85, 86, 91, 92, 94.
Remaining sample IDs are:
SKCM-UKRV-Mel-20-Tumor, SKCM-UKRV-Mel-24-Tumor, SKCM-UKRV-Mel-6-Tumor.
- •
Source T15 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
BF-A1PU, BF-A1PV, BF-A1PX, BF-A1PZ, BF-A1Q0, BF-A3DJ, BF-A3DL, BF-A3DM, BF-A3DN, D3-A1Q1, D3-A1Q3, D3-A1Q4, D3-A1Q5, D3-A1Q6, D3-A1Q7, D3-A1Q8, D3-A1Q9, D3-A1QA, D3-A1QB, D3-A2J6, D3-A2J7, D3-A2J8, D3-A2J9, D3-A2JA, D3-A2JB, D3-A2JC, D3-A2JD, D3-A2JF, D3-A2JG, D3-A2JH, D3-A2JK, D3-A2JL, D3-A2JN, D3-A2JO, D3-A2JP, D3-A3BZ, D3-A3C1, D3-A3C3, D3-A3C6, D3-A3C7, D3-A3C8, D3-A3CB, D3-A3CC, D3-A3CE, D3-A3CF, D3-A3ML, D3-A3MO, D3-A3MR, D3-A3MU, D3-A3MV, D9-A148, D9-A149, D9-A1JW, D9-A1JX, D9-A1X3, DA-A1HV, DA-A1HW, DA-A1HY, DA-A1I0, DA-A1I1, DA-A1I2, DA-A1I4, DA-A1I5, DA-A1I7, DA-A1I8, DA-A1IA, DA-A1IB, DA-A1IC, DA-A3F3, DA-A3F5, DA-A3F8, EB-A1NK, EB-A24C, EB-A24D, EB-A299, EB-A3HV, EE-A17X, EE-A17Y, EE-A17Z, EE-A180, EE-A181, EE-A182, EE-A183, EE-A184, EE-A185, EE-A20B, EE-A20C, EE-A20F, EE-A20H, EE-A20I, EE-A29A, EE-A29B, EE-A29C, EE-A29D, EE-A29E, EE-A29G, EE-A29H, EE-A29L, EE-A29M, EE-A29N, EE-A29P, EE-A29Q, EE-A29R, EE-A29S, EE-A29T, EE-A29V, EE-A29W, EE-A29X, EE-A2A0, EE-A2A1, EE-A2A2, EE-A2A5, EE-A2A6, EE-A2GB, EE-A2GC, EE-A2GD, EE-A2GE, EE-A2GH, EE-A2GI, EE-A2GJ, EE-A2GK, EE-A2GL, EE-A2GM, EE-A2GN, EE-A2GO, EE-A2GP, EE-A2GR, EE-A2GS, EE-A2GT, EE-A2GU, EE-A2M5, EE-A2M6, EE-A2M7, EE-A2M8, EE-A2MC, EE-A2MD, EE-A2ME, EE-A2MF, EE-A2MG, EE-A2MH, EE-A2MI, EE-A2MJ, EE-A2MK, EE-A2ML, EE-A2MM, EE-A2MN, EE-A2MP, EE-A2MQ, EE-A2MR, EE-A2MS, EE-A2MT, EE-A2MU, EE-A3AA, EE-A3AB, EE-A3AC, EE-A3AD, EE-A3AE, EE-A3AF, EE-A3AG, EE-A3AH, EE-A3J3, EE-A3J4, EE-A3J5, EE-A3J7, EE-A3J8, EE-A3JA, EE-A3JB, EE-A3JD, EE-A3JE, EE-A3JH, EE-A3JI, ER-A193, ER-A194, ER-A195, ER-A196, ER-A197, ER-A198, ER-A199, ER-A19A, ER-A19B, ER-A19C, ER-A19D, ER-A19E, ER-A19F, ER-A19G, ER-A19H, ER-A19J, ER-A19K, ER-A19L, ER-A19N, ER-A19O, ER-A19P, ER-A19Q, ER-A19S, ER-A19T, ER-A1A1, ER-A2NB, ER-A2NC, ER-A2ND, ER-A2NE, ER-A2NF, ER-A2NG, ER-A2NH, ER-A3ES, ER-A3ET, ER-A3EV, FR-A2OS, FS-A1YX, FS-A1YY, FS-A1Z0, FS-A1Z3, FS-A1Z4, FS-A1Z7, FS-A1ZB, FS-A1ZC, FS-A1ZD, FS-A1ZE, FS-A1ZF, FS-A1ZG, FS-A1ZH, FS-A1ZJ, FS-A1ZK, FS-A1ZM, FS-A1ZN, FS-A1ZP, FS-A1ZQ, FS-A1ZR, FS-A1ZS, FS-A1ZT, FS-A1ZU, FS-A1ZW, FS-A1ZY, FS-A1ZZ, FW-A3I3, GF-A2C7, GN-A262, GN-A263, GN-A264, GN-A265, GN-A266, GN-A267, GN-A268, GN-A269, GN-A26A, GN-A26C, GN-A26D, HR-A2OG, HR-A2OH, IH-A3EA, D3-A5GT, D9-A3Z4, D9-A4Z2, D9-A4Z3, D9-A4Z5, EB-A3XB, EB-A3XC, EB-A3XD, EB-A3XE, EB-A3Y6, EB-A3Y7, EB-A41A, EB-A41B, EB-A42Y, EB-A42Z, EB-A430, EB-A431, EB-A44N, EB-A44O, EB-A44P, EB-A4IQ, EB-A4IS, EB-A4OY, EB-A4OZ, EB-A4P0, EB-A551, EB-A553, EB-A57M, EB-A5SE, EB-A5SF, EB-A5UM, FR-A3R1, FW-A5DX, BF-A5EO, BF-A5EP, BF-A5EQ, BF-A5ER, BF-A5ES, D3-A51E, D3-A51F, D3-A51G, D3-A51H, D3-A51J, D3-A51K, D3-A51N, D3-A51R, D3-A51T, D3-A5GL, D3-A5GN, D3-A5GO, D3-A5GR, D3-A5GS, D9-A3Z1, D9-A3Z3, D9-A6E9, D9-A6EA, D9-A6EC, D9-A6EG, DA-A3F2, EB-A3XF, EB-A44Q, EB-A44R, EB-A4XL, EB-A5FP, EB-A5KH, EB-A5SG, EB-A5SH, EB-A5UL, EB-A5UN, EB-A5VU, EB-A5VV, EB-A6L9, EB-A6QY, EB-A6QZ, EB-A6R0, ER-A19M, ER-A19W, ER-A3PL, ER-A42H, ER-A42K, ER-A42L, FR-A3YN, FR-A3YO, FR-A44A, FR-A69P, FR-A726, FR-A728, FS-A1YW, FS-A1ZA, FS-A4F4, FS-A4F5, FS-A4F8, FS-A4F9, FS-A4FB, FS-A4FC, FS-A4FD, FW-A3R5, FW-A3TU, FW-A3TV, FW-A5DY, GF-A3OT, GF-A6C8, GF-A6C9, GF-A769, GN-A4U3, GN-A4U4, GN-A4U5, GN-A4U7, GN-A4U8, GN-A4U9, OD-A75X, QB-A6FS, RP-A690, RP-A693, RP-A694, RP-A695, D3-A5GU, FS-A4F0, GF-A4EO, RZ-AB0B, V3-A9ZX, V3-A9ZY, V4-A9E5, V4-A9E7, V4-A9E8, V4-A9E9, V4-A9EA, V4-A9EC, V4-A9ED, V4-A9EE, V4-A9EF, V4-A9EH, V4-A9EI, V4-A9EJ, V4-A9EK, V4-A9EL, V4-A9EM, V4-A9EO, V4-A9EQ, V4-A9ES, V4-A9ET, V4-A9EU, V4-A9EV, V4-A9EW, V4-A9EX, V4-A9EY, V4-A9EZ, V4-A9F0, V4-A9F1, V4-A9F2, V4-A9F3, V4-A9F4, V4-A9F5, V4-A9F7, V4-A9F8, VD-A8K7, VD-A8K8, VD-A8K9, VD-A8KA, VD-A8KB, VD-A8KD, VD-A8KE, VD-A8KF, VD-A8KG, VD-A8KH, VD-A8KI, VD-A8KJ, VD-A8KK, VD-A8KL, VD-A8KM, VD-A8KN, VD-A8KO, VD-AA8M, VD-AA8N, VD-AA8O, VD-AA8P, VD-AA8Q, VD-AA8R, VD-AA8S, VD-AA8T, WC-A87T, WC-A87U, WC-A87W, WC-A87Y, WC-A880, WC-A881, WC-A882, WC-A883, WC-A884, WC-A885, WC-A888, WC-A88A, WC-AA9A, WC-AA9E, YZ-A980, YZ-A982, YZ-A983, YZ-A984, YZ-A985.
- ⧫
Nasopharyngeal Cancer (11 samples):
- •
NPC088D, NPC105D, NPC29F, NPC31F, NPC34F, NPC3F, NPC42F, NPC4D, NPC4F, NPC5D, NPC5F.
- ⧫
Oral Cancer (106 samples):
- •
Source I2 = [
76]. Sample IDs are of the form OSCC-GB_0*, where * is:
001011, 002011, 003011, 004011, 005011, 006011, 007011, 008011, 011011, 012011, 013011, 014011, 015011, 016011, 017011, 018011, 019011, 020011, 021011, 022011, 023011, 024011, 025011, 026011, 027011, 028011, 029011, 030011, 031011, 032011, 033011, 034011, 035011, 036011, 037011, 038011, 039011, 040011, 041011, 042011, 043011, 044011, 045011, 046011, 047011, 048011, 049011, 050011, 051011, 052011, 053011, 054011, 055011, 056011, 057011, 058011, 059011, 060011, 061011, 062011, 063011, 064011, 065011, 066011, 067011, 068011, 069011, 070011, 073011, 074011, 075011, 076011, 077011, 080011, 081011, 082011, 083011, 084011, 085011, 086011, 087011, 088011, 089011, 090011, 091011, 092011, 093011, 094011, 095011, 096011, 097011, 098011, 099011, 100011, 101011, 102011, 103011, 104011, 105011, 106011, 107011, 108011, 109011, 110011, 111011, 112011.
- ⧫
Ovarian Cancer (471 samples):
- •
OCC01PT, OCC02PT, OCC03PT, OCC04PT, OCC05PT, OCC06PT, OCC07PT, OCC08PT.
- •
Source T16 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
04-1331, 04-1332, 04-1336, 04-1337, 04-1338, 04-1342, 04-1343, 04-1346, 04-1347, 04-1348, 04-1349, 04-1350, 04-1351, 04-1353, 04-1356, 04-1357, 04-1361, 04-1362, 04-1364, 04-1365, 04-1367, 04-1369, 04-1514, 04-1516, 04-1517, 04-1519, 04-1525, 04-1530, 04-1542, 04-1638, 04-1644, 04-1646, 04-1648, 04-1649, 04-1651, 04-1652, 04-1655, 09-0364, 09-0365, 09-0366, 09-0367, 09-0369, 09-1659, 09-1661, 09-1662, 09-1664, 09-1665, 09-1666, 09-1669, 09-1670, 09-1672, 09-1673, 09-1674, 09-1675, 09-2044, 09-2045, 09-2049, 09-2050, 09-2051, 09-2053, 09-2056, 10-0926, 10-0927, 10-0928, 10-0930, 10-0931, 10-0933, 10-0934, 10-0935, 10-0937, 10-0938, 13-0714, 13-0717, 13-0720, 13-0723, 13-0724, 13-0726, 13-0727, 13-0730, 13-0751, 13-0755, 13-0758, 13-0760, 13-0761, 13-0762, 13-0765, 13-0791, 13-0792, 13-0793, 13-0795, 13-0800, 13-0801, 13-0804, 13-0807, 13-0883, 13-0884, 13-0885, 13-0886, 13-0887, 13-0889, 13-0890, 13-0891, 13-0893, 13-0894, 13-0897, 13-0899, 13-0900, 13-0901, 13-0903, 13-0904, 13-0905, 13-0906, 13-0910, 13-0911, 13-0912, 13-0913, 13-0916, 13-0919, 13-0920, 13-0923, 13-0924, 13-1403, 13-1404, 13-1405, 13-1407, 13-1408, 13-1409, 13-1410, 13-1411, 13-1412, 13-1477, 13-1481, 13-1482, 13-1483, 13-1484, 13-1487, 13-1488, 13-1489, 13-1491, 13-1492, 13-1494, 13-1495, 13-1496, 13-1497, 13-1498, 13-1499, 13-1501, 13-1504, 13-1505, 13-1506, 13-1507, 13-1509, 13-1510, 13-1512, 13-2057, 13-2059, 13-2060, 13-2061, 13-2065, 13-2066, 13-2071, 20-0987, 20-0990, 20-0991, 20-1682, 20-1683, 20-1684, 20-1685, 20-1686, 20-1687, 23-1021, 23-1022, 23-1023, 23-1024, 23-1026, 23-1027, 23-1028, 23-1029, 23-1030, 23-1031, 23-1032, 23-1109, 23-1110, 23-1111, 23-1114, 23-1116, 23-1117, 23-1118, 23-1119, 23-1120, 23-1122, 23-1123, 23-1124, 23-1809, 23-2072, 23-2077, 23-2078, 23-2079, 23-2081, 23-2641, 23-2643, 23-2645, 23-2647, 23-2649, 24-0966, 24-0968, 24-0970, 24-0975, 24-0979, 24-0980, 24-0982, 24-1103, 24-1104, 24-1105, 24-1413, 24-1416, 24-1417, 24-1418, 24-1419, 24-1422, 24-1423, 24-1424, 24-1425, 24-1426, 24-1427, 24-1428, 24-1431, 24-1434, 24-1435, 24-1436, 24-1463, 24-1464, 24-1466, 24-1469, 24-1470, 24-1471, 24-1474, 24-1544, 24-1545, 24-1546, 24-1548, 24-1549, 24-1551, 24-1552, 24-1553, 24-1555, 24-1556, 24-1557, 24-1558, 24-1560, 24-1562, 24-1563, 24-1564, 24-1565, 24-1567, 24-1603, 24-1604, 24-1614, 24-1616, 24-1842, 24-1843, 24-1844, 24-1845, 24-1846, 24-1847, 24-1849, 24-1850, 24-2019, 24-2024, 24-2030, 24-2035, 24-2038, 24-2254, 24-2260, 24-2261, 24-2262, 24-2267, 24-2271, 24-2280, 24-2281, 24-2288, 24-2289, 24-2290, 24-2293, 24-2298, 25-1313, 25-1315, 25-1316, 25-1317, 25-1318, 25-1319, 25-1320, 25-1321, 25-1322, 25-1324, 25-1325, 25-1326, 25-1328, 25-1329, 25-1623, 25-1625, 25-1626, 25-1627, 25-1628, 25-1630, 25-1631, 25-1632, 25-1633, 25-1634, 25-1635, 25-2042, 25-2391, 25-2392, 25-2393, 25-2396, 25-2398, 25-2399, 25-2400, 25-2401, 25-2404, 25-2408, 25-2409, 29-1688, 29-1690, 29-1691, 29-1693, 29-1694, 29-1695, 29-1696, 29-1697, 29-1698, 29-1699, 29-1701, 29-1702, 29-1703, 29-1705, 29-1707, 29-1710, 29-1711, 29-1761, 29-1762, 29-1763, 29-1764, 29-1766, 29-1768, 29-1769, 29-1770, 29-1771, 29-1774, 29-1775, 29-1776, 29-1777, 29-1778, 29-1781, 29-1783, 29-1784, 29-1785, 29-2427, 29-2429, 29-2431, 29-2432, 29-2434, 29-2436, 30-1714, 30-1718, 30-1853, 30-1855, 30-1856, 30-1857, 31-1950, 36-1568, 36-1569, 36-1570, 36-1571, 36-1574, 36-1575, 36-1576, 36-1577, 36-1578, 36-1580, 36-2530, 36-2532, 36-2533, 36-2534, 36-2537, 36-2538, 36-2539, 36-2540, 36-2542, 36-2543, 36-2544, 36-2545, 36-2547, 36-2548, 36-2551, 36-2552, 42-2582, 42-2587, 42-2588, 42-2589, 42-2590, 42-2591, 57-1582, 57-1584, 57-1586, 57-1993, 59-2348, 59-2350, 59-2351, 59-2352, 59-2354, 59-2355, 59-2363, 59-2372, 61-1722, 61-1725, 61-1727, 61-1728, 61-1730, 61-1733, 61-1736, 61-1737, 61-1738, 61-1740, 61-1741, 61-1895, 61-1899, 61-1900, 61-1901, 61-1903, 61-1904, 61-1906, 61-1907, 61-1910, 61-1911, 61-1913, 61-1914, 61-1915, 61-1995, 61-1998, 61-2000, 61-2002, 61-2003, 61-2008, 61-2009, 61-2012, 61-2016, 61-2092, 61-2094, 61-2095, 61-2097, 61-2101, 61-2102, 61-2104, 61-2109, 61-2110, 61-2111, 61-2113, 61-2610, 61-2611, 61-2612, 61-2613, 61-2614.
- ⧫
Pancreatic Cancer (184 samples):
- •
IPMN 11, IPMN 12, IPMN 20, IPMN 21, IPMN 36, IPMN 4, IPMN 41, MCN 162, MCN 163, MCN 164, MCN 166, MCN 168, MCN 169, MCN 170, SCA 14, SCA 23, SCA 27, SCA 35, SCA 37, SCA 38, SCA 40, SPN 8.
- •
Source J2 = [
79]. Sample IDs are of the form PanNET*, where * is:
10PT, 21PT, 23PT, 24PT, 25PT, 31PT, 36PT, 3PT, 7PT, 93PT.
- •
Source T17 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
2L-AAQA, 2L-AAQE, 2L-AAQI, 2L-AAQJ, 2L-AAQL, 2L-AAQM, 3A-A9I5, 3A-A9I7, 3A-A9I9, 3A-A9IB, 3A-A9IC, 3A-A9IH, 3A-A9IJ, 3A-A9IL, 3A-A9IN, 3A-A9IO, 3A-A9IR, 3A-A9IS, 3A-A9IU, 3E-AAAY, 3E-AAAZ, F2-6879, F2-6880, F2-7273, F2-7276, F2-A44G, F2-A44H, F2-A7TX, F2-A8YN, FB-A4P5, FB-A4P6, FB-A545, FB-A5VM, FB-A78T, FB-A7DR, FB-AAPS, FQ-6551, FQ-6552, FQ-6553, FQ-6554, FQ-6555, FQ-6558, FQ-6559, FZ-5919, FZ-5920, FZ-5921, FZ-5922, FZ-5923, FZ-5924, FZ-5926, H6-8124, H6-A45N, H8-A6C1, HV-A5A3, HV-A5A4, HV-A5A5, HV-A5A6, HV-A7OL, HV-A7OP, HV-AA8X, HZ-7289, HZ-7918, HZ-7919, HZ-7920, HZ-7922, HZ-7923, HZ-7924, HZ-7925, HZ-7926, HZ-8001, HZ-8002, HZ-8003, HZ-8005, HZ-8315, HZ-8317, HZ-8636, HZ-8637, HZ-8638, HZ-A49G, HZ-A49H, HZ-A49I, HZ-A4BH, HZ-A4BK, HZ-A77O, HZ-A77P, HZ-A77Q, HZ-A8P0, HZ-A8P1, IB-7644, IB-7645, IB-7646, IB-7647, IB-7649, IB-7651, IB-7652, IB-7654, IB-7885, IB-7886, IB-7887, IB-7888, IB-7889, IB-7890, IB-7891, IB-7893, IB-7897, IB-8126, IB-8127, IB-A5SO, IB-A5SP, IB-A5SQ, IB-A5SS, IB-A5ST, IB-A6UF, IB-A6UG, IB-A7LX, IB-A7M4, IB-AAUM, IB-AAUN, IB-AAUO, IB-AAUP, IB-AAUR, IB-AAUS, IB-AAUT, IB-AAUU, IB-AAUV, IB-AAUW, LB-A7SX, LB-A8F3, LB-A9Q5, M8-A5N4, OE-A75W, PZ-A5RE, Q3-A5QY, Q3-AA2A, RB-A7B8, RB-AA9M, RL-AAAS, S4-A8RM, S4-A8RO, S4-A8RP, US-A774, US-A776, US-A779, US-A77E, US-A77G, US-A77J, XD-AAUL, XN-A8T3, XN-A8T5, YB-A89D, YH-A8SY, YY-A8LH.
- ⧫
Pheochromocytoma and Paraganglioma (178 samples):
- •
Source T18 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
P7-A5NX, P7-A5NY, P8-A5KC, P8-A5KD, P8-A6RX, P8-A6RY, PR-A5PF, PR-A5PG, PR-A5PH, QR-A6GO, QR-A6GR, QR-A6GS, QR-A6GT, QR-A6GU, QR-A6GW, QR-A6GX, QR-A6GY, QR-A6GZ, QR-A6H0, QR-A6H1, QR-A6H2, QR-A6H3, QR-A6H4, QR-A6H5, QR-A6H6, QR-A6ZZ, QR-A702, QR-A703, QR-A705, QR-A706, QR-A707, QR-A708, QR-A70A, QR-A70C, QR-A70D, QR-A70E, QR-A70G, QR-A70H, QR-A70I, QR-A70J, QR-A70K, QR-A70M, QR-A70N, QR-A70O, QR-A70P, QR-A70Q, QR-A70R, QR-A70T, QR-A70U, QR-A70V, QR-A70W, QR-A70X, QR-A7IN, QR-A7IP, QT-A5XJ, QT-A5XK, QT-A5XL, QT-A5XM, QT-A5XN, QT-A5XO, QT-A5XP, QT-A69Q, QT-A7U0, RM-A68T, RM-A68W, RT-A6Y9, RT-A6YA, RT-A6YC, RW-A67V, RW-A67W, RW-A67X, RW-A67Y, RW-A680, RW-A681, RW-A684, RW-A685, RW-A686, RW-A688, RW-A689, RW-A68A, RW-A68B, RW-A68C, RW-A68D, RW-A68F, RW-A68G, RW-A7CZ, RW-A7D0, RW-A8AZ, RX-A8JQ, S7-A7WL, S7-A7WM, S7-A7WN, S7-A7WO, S7-A7WP, S7-A7WQ, S7-A7WR, S7-A7WT, S7-A7WU, S7-A7WV, S7-A7WW, S7-A7WX, S7-A7X0, S7-A7X1, S7-A7X2, SA-A6C2, SP-A6QC, SP-A6QD, SP-A6QF, SP-A6QG, SP-A6QH, SP-A6QI, SP-A6QJ, SP-A6QK, SQ-A6I4, SQ-A6I6, SR-A6MP, SR-A6MQ, SR-A6MR, SR-A6MS, SR-A6MT, SR-A6MU, SR-A6MV, SR-A6MX, SR-A6MY, SR-A6MZ, SR-A6N0, TT-A6YJ, TT-A6YK, TT-A6YN, TT-A6YO, TT-A6YP, W2-A7H5, W2-A7H7, W2-A7HA, W2-A7HB, W2-A7HC, W2-A7HD, W2-A7HE, W2-A7HF, W2-A7HH, W2-A7UY, WB-A80K, WB-A80L, WB-A80M, WB-A80N, WB-A80O, WB-A80P, WB-A80Q, WB-A80V, WB-A80Y, WB-A814, WB-A815, WB-A816, WB-A817, WB-A818, WB-A819, WB-A81A, WB-A81D, WB-A81E, WB-A81F, WB-A81G, WB-A81H, WB-A81I, WB-A81J, WB-A81K, WB-A81M, WB-A81N, WB-A81P, WB-A81Q, WB-A81R, WB-A81S, WB-A81T, WB-A81V, WB-A81W, WB-A820, WB-A821, WB-A822, XG-A823.
- ⧫
Prostate Cancer (480 samples):
- •
Source B2 = [
80]. Sample IDs are of the form P0*-Tumor, where * is:
0-000450, 1-28, 2-1562, 2-2035, 3-1334, 3-1426, 3-1906, 3-2345, 3-2620, 3-3391, 3-595, 3-871, 4-1084, 4-1243, 4-1421, 4-1790, 4-2599, 4-2641, 4-2666, 4-2740, 4-47, 4-594, 5-2212, 5-2594, 5-3436, 5-3829, 5-3852, 5-3859, 5-620, 6-1125, 6-1696, 6-2325, 6-3676, 6-3939, 6-4428, 7-144, 7-360, 7-5036, 7-684, 7-718, 7-837, 8-2516, 8-590, 9-120, 9-1372, 9-1580, 9-2497, 9-649.
- •
Source B3 = [
81]. Sample IDs are of the form PR-*, where * is:
0508, 0581, 1701, 1783, 2832, 3027, 3043.
Remaining sample IDs are of the form PR-*-Tumor, where * is:
00-1165, 00-160, 00-1823, 0099, 01-1934, 01-2382, 01-2492, 01-2554, 02-1082, 02-169, 02-1736, 02-1899, 02-2072, 02-2480, 02-254, 03-022, 03-1026, 03-870, 04-1367, 04-194, 04-3113, 04-3222, 04-3347, 04-639, 04-903, 0415, 0427, 05-3440, 05-3595, 05-839, 06-1651, 06-1749, 06-1999, 09-2517, 09-2744, 09-2767, 09-3421, 09-3566, 09-3687, 09-5094, 09-5245, 09-5446, 09-5630, 09-5700, 09-5702, 1024, 1043, 2661, 2682, 2740, 2761, 2762, 2858, 2872, 2915, 2916, 3023, 3026, 3034, 3035, 3036, 3048, 3051, 3127.
- •
Source G2 = [
82] (below * stands for WA, e.g., *10 = WA10):
T12, T32, T8, T90, T91, T92, T93, T94, T95, T96, T97, *10, *11, *12, *13, *14, *15, *16, *17, *18, *19, *20, *22, *23, *24, *25, *26, *27, *28, *29, *3, *30, *31, *32, *33, *35, *37, *38, *39, *40, *41, *42, *43-27, *43-44, *43-71, *46, *47, *48, *49, *50, *51, *52, *53, *54, *55, *56, *57, *58, *59, *60, *7.
- •
Source T19 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
CH-5737, CH-5738, CH-5739, CH-5740, CH-5741, CH-5743, CH-5744, CH-5745, CH-5746, CH-5748, CH-5750, CH-5751, CH-5752, CH-5753, CH-5754, CH-5761, CH-5762, CH-5763, CH-5764, CH-5765, CH-5766, CH-5767, CH-5768, CH-5769, CH-5771, CH-5772, CH-5788, CH-5789, CH-5790, CH-5791, CH-5792, CH-5794, EJ-5494, EJ-5495, EJ-5496, EJ-5497, EJ-5498, EJ-5499, EJ-5501, EJ-5502, EJ-5503, EJ-5504, EJ-5505, EJ-5506, EJ-5507, EJ-5508, EJ-5509, EJ-5510, EJ-5511, EJ-5512, EJ-5514, EJ-5515, EJ-5516, EJ-5517, EJ-5518, EJ-5519, EJ-5521, EJ-5522, EJ-5524, EJ-5525, EJ-5526, EJ-5527, EJ-5530, EJ-5531, EJ-5532, EJ-5542, EJ-7115, EJ-7123, EJ-7125, EJ-7218, EJ-7312, EJ-7314, EJ-7315, EJ-7317, EJ-7318, EJ-7321, EJ-7325, EJ-7327, EJ-7328, EJ-7330, EJ-7331, EJ-7781, EJ-7782, EJ-7783, EJ-7784, EJ-7785, EJ-7786, EJ-7788, EJ-7789, EJ-7791, EJ-7792, EJ-7793, EJ-7794, EJ-7797, EJ-8468, EJ-8469, EJ-8470, EJ-8472, EJ-8474, EJ-A46B, EJ-A46D, EJ-A46E, EJ-A46F, EJ-A46G, EJ-A46H, EJ-A46I, EJ-A65B, EJ-A65D, EJ-A65E, EJ-A65F, EJ-A65G, EJ-A65J, EJ-A65M, EJ-A6RA, EJ-A6RC, EJ-A7NF, EJ-A7NG, EJ-A7NH, EJ-A7NM, EJ-A7NN, FC-7708, FC-7961, FC-A4JI, FC-A5OB, FC-A66V, FC-A6HD, G9-6329, G9-6332, G9-6333, G9-6336, G9-6338, G9-6339, G9-6342, G9-6343, G9-6347, G9-6348, G9-6351, G9-6353, G9-6354, G9-6356, G9-6361, G9-6362, G9-6363, G9-6364, G9-6365, G9-6366, G9-6367, G9-6369, G9-6370, G9-6371, G9-6373, G9-6377, G9-6378, G9-6379, G9-6384, G9-6385, G9-6494, G9-6496, G9-6498, G9-6499, G9-7510, G9-7519, G9-7521, G9-7522, G9-7523, G9-7525, H9-7775, H9-A6BX, H9-A6BY, HC-7075, HC-7077, HC-7078, HC-7079, HC-7080, HC-7081, HC-7209, HC-7210, HC-7211, HC-7212, HC-7213, HC-7230, HC-7231, HC-7232, HC-7233, HC-7736, HC-7737, HC-7738, HC-7740, HC-7742, HC-7744, HC-7745, HC-7747, HC-7748, HC-7749, HC-7750, HC-7752, HC-7817, HC-7818, HC-7819, HC-7820, HC-7821, HC-8213, HC-8216, HC-8256, HC-8257, HC-8258, HC-8259, HC-8260, HC-8261, HC-8262, HC-8264, HC-8265, HC-8266, HC-A48F, HC-A4ZV, HC-A631, HC-A632, HC-A6AL, HC-A6AN, HC-A6AO, HC-A6AP, HC-A6AQ, HC-A6AS, HC-A6HX, HC-A6HY, HC-A76W, HC-A76X, HI-7168, HI-7169, HI-7170, HI-7171, J4-8198, J4-8200, J4-A67K, J4-A67L, J4-A67M, J4-A67N, J4-A67O, J4-A67Q, J4-A67R, J4-A67S, J4-A67T, J4-A6G1, J4-A6G3, J4-A6M7, J9-A52B, J9-A52C, J9-A52D, J9-A52E, KC-A4BL, KC-A4BN, KC-A4BO, KC-A4BR, KC-A4BV, KC-A7F3, KC-A7F5, KC-A7F6, KC-A7FA, KC-A7FD, KC-A7FE, KK-A59V, KK-A59X, KK-A59Y, KK-A59Z, KK-A5A1, KK-A6DY, KK-A6E0, KK-A6E1, KK-A6E2, KK-A6E3, KK-A6E4, KK-A6E5, KK-A6E6, KK-A6E7, KK-A6E8, KK-A7AP, KK-A7AQ, KK-A7AU, KK-A7AV, KK-A7AW, KK-A7AY, KK-A7AZ, KK-A7B0, KK-A7B1, KK-A7B2, KK-A7B3, KK-A7B4, M7-A71Y, M7-A71Z, M7-A720, M7-A721, M7-A723, M7-A724, M7-A725, QU-A6IL, QU-A6IM, QU-A6IN, QU-A6IO, QU-A6IP, SU-A7E7.
- ⧫
Rectum Adenocarcinoma (115 samples):
- •
Source T20 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
AF-2687, AF-2689, AF-2690, AF-2691, AF-2692, AF-2693, AF-3400, AF-3911, AF-4110, AF-5654, AF-6136, AF-6655, AF-6672, AG-3574, AG-3575, AG-3578, AG-3580, AG-3581, AG-3582, AG-3583, AG-3584, AG-3586, AG-3587, AG-3591, AG-3592, AG-3593, AG-3594, AG-3598, AG-3599, AG-3600, AG-3601, AG-3602, AG-3605, AG-3608, AG-3609, AG-3611, AG-3612, AG-3725, AG-3731, AG-3732, AG-3742, AG-4021, AG-4022, AG-A002, AG-A008, AG-A00C, AG-A00Y, AG-A011, AG-A014, AG-A015, AG-A016, AG-A01L, AH-6544, AH-6643, AH-6644, AH-6897, AH-6903, BM-6198, CI-6619, CI-6620, CI-6621, CI-6622, CI-6624, CL-4957, CL-5917, CL-5918, DC-4749, DC-5337, DC-5869, DC-6154, DC-6155, DC-6157, DC-6158, DC-6681, DC-6682, DC-6683, DT-5265, DY-A0XA, DY-A1DC, DY-A1DD, DY-A1DF, DY-A1DG, DY-A1H8, EF-5830, EI-6506, EI-6507, EI-6508, EI-6509, EI-6510, EI-6511, EI-6512, EI-6513, EI-6514, EI-6881, EI-6882, EI-6883, EI-6884, EI-6885, EI-6917, EI-7002, EI-7004, F5-6464, F5-6465, F5-6571, F5-6702, F5-6812, F5-6813, F5-6814, F5-6861, F5-6863, F5-6864, G5-6233, G5-6235, G5-6572, G5-6641.
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Renal Cell Carcinoma (709 samples):
- •
K1, K20, K27, K29, K3, K31, K32, K38, K44, K48, T127, T142, T144, T163, T164, T166, T183M.
- •
Source T21 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
A3-3308, A3-3311, A3-3313, A3-3316, A3-3317, A3-3319, A3-3320, A3-3322, A3-3323, A3-3324, A3-3326, A3-3331, A3-3346, A3-3347, A3-3349, A3-3351, A3-3357, A3-3358, A3-3362, A3-3363, A3-3365, A3-3367, A3-3370, A3-3372, A3-3373, A3-3374, A3-3376, A3-3378, A3-3380, A3-3382, A3-3383, A3-3385, A3-3387, A4-7286, A4-7287, A4-7288, A4-7583, A4-7584, A4-7585, A4-7732, A4-7734, A4-7828, A4-7915, A4-7996, A4-7997, A4-8098, A4-8310, A4-8311, A4-8312, A4-8515, A4-8516, A4-8517, A4-8518, A4-8630, A4-A48D, A4-A4ZT, A4-A57E, A4-A5DU, A4-A5XZ, A4-A5Y0, A4-A5Y1, A4-A6HP, AK-3425, AK-3427, AK-3428, AK-3429, AK-3430, AK-3431, AK-3434, AK-3436, AK-3440, AK-3443, AK-3444, AK-3445, AK-3447, AK-3450, AK-3451, AK-3453, AK-3454, AK-3455, AK-3456, AK-3458, AK-3460, AK-3461, AK-3465, AL-3466, AL-3467, AL-3468, AL-3472, AL-3473, AL-7173, AL-A5DJ, AS-3777, AS-3778, AT-A5NU, B0-4690, B0-4691, B0-4693, B0-4694, B0-4697, B0-4700, B0-4703, B0-4706, B0-4707, B0-4710, B0-4712, B0-4713, B0-4714, B0-4718, B0-4810, B0-4811, B0-4813, B0-4814, B0-4815, B0-4816, B0-4817, B0-4818, B0-4819, B0-4822, B0-4823, B0-4824, B0-4827, B0-4828, B0-4833, B0-4836, B0-4837, B0-4838, B0-4839, B0-4841, B0-4842, B0-4843, B0-4844, B0-4845, B0-4846, B0-4847, B0-4848, B0-4849, B0-4852, B0-4945, B0-5075, B0-5077, B0-5080, B0-5081, B0-5083, B0-5084, B0-5085, B0-5088, B0-5092, B0-5094, B0-5095, B0-5096, B0-5097, B0-5098, B0-5099, B0-5100, B0-5102, B0-5104, B0-5106, B0-5107, B0-5108, B0-5109, B0-5110, B0-5113, B0-5115, B0-5116, B0-5117, B0-5119, B0-5120, B0-5121, B0-5399, B0-5400, B0-5402, B0-5691, B0-5692, B0-5693, B0-5694, B0-5695, B0-5696, B0-5697, B0-5698, B0-5699, B0-5701, B0-5702, B0-5703, B0-5705, B0-5706, B0-5707, B0-5709, B0-5710, B0-5711, B0-5712, B0-5713, B0-5812, B1-5398, B1-A47M, B1-A47N, B1-A47O, B1-A654, B1-A655, B1-A656, B1-A657, B2-3923, B2-3924, B2-4098, B2-4099, B2-4101, B2-4102, B2-5633, B2-5635, B2-5641, B3-3925, B3-3926, B3-4103, B3-4104, B3-8121, B4-5377, B4-5832, B4-5834, B4-5835, B4-5836, B4-5838, B4-5843, B4-5844, B8-4143, B8-4146, B8-4148, B8-4151, B8-4153, B8-4154, B8-4619, B8-4620, B8-4621, B8-4622, B8-5158, B8-5159, B8-5162, B8-5163, B8-5164, B8-5165, B8-5545, B8-5546, B8-5549, B8-5550, B8-5551, B8-5552, B8-5553, B9-4113, B9-4114, B9-4115, B9-4116, B9-4117, B9-4617, B9-5155, B9-5156, B9-7268, B9-A44B, B9-A5W7, B9-A5W8, B9-A5W9, B9-A69E, BP-4158, BP-4159, BP-4160, BP-4161, BP-4162, BP-4163, BP-4164, BP-4165, BP-4166, BP-4167, BP-4169, BP-4170, BP-4173, BP-4174, BP-4176, BP-4177, BP-4326, BP-4329, BP-4330, BP-4331, BP-4337, BP-4338, BP-4340, BP-4341, BP-4342, BP-4343, BP-4345, BP-4346, BP-4347, BP-4349, BP-4351, BP-4352, BP-4354, BP-4355, BP-4756, BP-4758, BP-4759, BP-4760, BP-4761, BP-4762, BP-4763, BP-4765, BP-4766, BP-4768, BP-4770, BP-4771, BP-4774, BP-4775, BP-4777, BP-4781, BP-4782, BP-4787, BP-4789, BP-4790, BP-4795, BP-4797, BP-4798, BP-4799, BP-4801, BP-4803, BP-4804, BP-4807, BP-4960, BP-4961, BP-4962, BP-4963, BP-4964, BP-4965, BP-4967, BP-4968, BP-4969, BP-4970, BP-4971, BP-4972, BP-4973, BP-4974, BP-4975, BP-4976, BP-4977, BP-4981, BP-4982, BP-4983, BP-4985, BP-4986, BP-4987, BP-4988, BP-4989, BP-4991, BP-4992, BP-4993, BP-4994, BP-4995, BP-4998, BP-4999, BP-5000, BP-5001, BP-5004, BP-5006, BP-5007, BP-5008, BP-5009, BP-5010, BP-5168, BP-5169, BP-5170, BP-5173, BP-5174, BP-5175, BP-5176, BP-5177, BP-5178, BP-5180, BP-5181, BP-5182, BP-5183, BP-5184, BP-5185, BP-5186, BP-5187, BP-5189, BP-5190, BP-5191, BP-5192, BP-5194, BP-5195, BP-5196, BP-5198, BP-5199, BP-5200, BP-5201, BP-5202, BQ-5875, BQ-5876, BQ-5877, BQ-5878, BQ-5879, BQ-5880, BQ-5881, BQ-5882, BQ-5883, BQ-5884, BQ-5885, BQ-5886, BQ-5887, BQ-5888, BQ-5889, BQ-5890, BQ-5891, BQ-5892, BQ-5893, BQ-5894, BQ-7044, BQ-7045, BQ-7046, BQ-7048, BQ-7049, BQ-7050, BQ-7051, BQ-7053, BQ-7055, BQ-7056, BQ-7058, BQ-7059, BQ-7060, BQ-7061, BQ-7062, CJ-4634, CJ-4635, CJ-4636, CJ-4637, CJ-4638, CJ-4639, CJ-4640, CJ-4641, CJ-4643, CJ-4644, CJ-4868, CJ-4869, CJ-4870, CJ-4871, CJ-4872, CJ-4873, CJ-4874, CJ-4875, CJ-4876, CJ-4878, CJ-4881, CJ-4882, CJ-4884, CJ-4885, CJ-4886, CJ-4887, CJ-4888, CJ-4889, CJ-4890, CJ-4891, CJ-4892, CJ-4893, CJ-4894, CJ-4895, CJ-4897, CJ-4899, CJ-4900, CJ-4901, CJ-4902, CJ-4903, CJ-4904, CJ-4905, CJ-4907, CJ-4908, CJ-4912, CJ-4913, CJ-4916, CJ-4918, CJ-4920, CJ-4923, CJ-5671, CJ-5672, CJ-5675, CJ-5676, CJ-5677, CJ-5678, CJ-5679, CJ-5680, CJ-5681, CJ-5682, CJ-5683, CJ-5684, CJ-5686, CJ-6027, CJ-6028, CJ-6030, CJ-6031, CJ-6032, CJ-6033, CW-5580, CW-5581, CW-5583, CW-5584, CW-5585, CW-5588, CW-5589, CW-5591, CW-6087, CW-6090, CW-6093, CW-6097, CZ-4853, CZ-4854, CZ-4856, CZ-4857, CZ-4858, CZ-4859, CZ-4861, CZ-4862, CZ-4863, CZ-4865, CZ-4866, CZ-5451, CZ-5452, CZ-5453, CZ-5454, CZ-5455, CZ-5456, CZ-5457, CZ-5458, CZ-5459, CZ-5460, CZ-5461, CZ-5462, CZ-5463, CZ-5464, CZ-5465, CZ-5466, CZ-5467, CZ-5468, CZ-5469, CZ-5470, CZ-5982, CZ-5984, CZ-5985, CZ-5986, CZ-5987, CZ-5988, CZ-5989, DV-5565, DV-5566, DV-5568, DV-5569, DV-5574, DV-5575, DV-5576, DW-5560, DW-5561, DW-7834, DW-7837, DW-7838, DW-7839, DW-7840, DW-7841, DW-7842, DW-7963, DZ-6131, DZ-6132, DZ-6133, DZ-6134, DZ-6135, EU-5904, EU-5905, EU-5906, EU-5907, EV-5901, EV-5902, EV-5903, F9-A4JJ, G7-6789, G7-6790, G7-6792, G7-6793, G7-6795, G7-6796, G7-6797, G7-7501, G7-7502, G7-A4TM, GL-6846, GL-7773, GL-7966, GL-8500, GL-A4EM, GL-A59R, GL-A59T, HE-7128, HE-7129, HE-7130, HE-A5NF, HE-A5NH, HE-A5NI, HE-A5NJ, HE-A5NK, HE-A5NL, IA-A40U, IA-A40X, IA-A40Y, IZ-8195, IZ-8196, IZ-A6M8, IZ-A6M9, J7-6720, J7-8537, KL-8323, KL-8324, KL-8325, KL-8326, KL-8327, KL-8328, KL-8329, KL-8330, KL-8331, KL-8332, KL-8333, KL-8334, KL-8335, KL-8336, KL-8337, KL-8338, KL-8339, KL-8340, KL-8341, KL-8342, KL-8343, KL-8344, KL-8345, KL-8346, KM-8438, KM-8439, KM-8440, KM-8441, KM-8442, KM-8443, KM-8476, KM-8477, KM-8639, KN-8418, KN-8419, KN-8421, KN-8422, KN-8423, KN-8424, KN-8425, KN-8426, KN-8427, KN-8428, KN-8429, KN-8430, KN-8431, KN-8432, KN-8433, KN-8434, KN-8435, KN-8436, KN-8437, KO-8403, KO-8404, KO-8405, KO-8406, KO-8407, KO-8408, KO-8409, KO-8410, KO-8411, KO-8413, KO-8414, KO-8415, KO-8416, KO-8417, KV-A6GD, KV-A6GE, MH-A55W, MH-A55Z, MH-A560, MH-A561, MH-A562, P4-A5E6, P4-A5E7, P4-A5E8, P4-A5EA, P4-A5EB, P4-A5ED, PJ-A5Z8, PJ-A5Z9, Q2-A5QZ.
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Sarcoma (255 samples):
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Source T22 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
3B-A9HI, 3B-A9HJ, 3B-A9HL, 3B-A9HO, 3B-A9HP, 3B-A9HQ, 3B-A9HR, 3B-A9HS, 3B-A9HT, 3B-A9HU, 3B-A9HV, 3B-A9HX, 3B-A9HY, 3B-A9HZ, 3B-A9I0, 3B-A9I1, 3B-A9I3, 3R-A8YX, DX-A1KU, DX-A1KW, DX-A1KX, DX-A1KY, DX-A1KZ, DX-A1L0, DX-A1L1, DX-A1L2, DX-A1L3, DX-A1L4, DX-A23R, DX-A23T, DX-A23U, DX-A23V, DX-A23Y, DX-A240, DX-A2IZ, DX-A2J0, DX-A2J1, DX-A2J4, DX-A3LS, DX-A3LT, DX-A3LU, DX-A3LW, DX-A3LY, DX-A3M1, DX-A3M2, DX-A3U5, DX-A3U6, DX-A3U7, DX-A3U8, DX-A3U9, DX-A3UA, DX-A3UB, DX-A3UC, DX-A3UD, DX-A3UE, DX-A3UF, DX-A48J, DX-A48K, DX-A48L, DX-A48N, DX-A48O, DX-A48P, DX-A48R, DX-A48U, DX-A48V, DX-A6B7, DX-A6B8, DX-A6B9, DX-A6BA, DX-A6BB, DX-A6BE, DX-A6BF, DX-A6BG, DX-A6BH, DX-A6BK, DX-A6YQ, DX-A6YR, DX-A6YS, DX-A6YT, DX-A6YU, DX-A6YV, DX-A6YX, DX-A6YZ, DX-A6Z0, DX-A6Z2, DX-A7EF, DX-A7EI, DX-A7EL, DX-A7EM, DX-A7EN, DX-A7EO, DX-A7EQ, DX-A7ER, DX-A7ES, DX-A7ET, DX-A7EU, DX-A8BG, DX-A8BH, DX-A8BJ, DX-A8BK, DX-A8BL, DX-A8BM, DX-A8BN, DX-A8BO, DX-A8BP, DX-A8BR, DX-A8BT, DX-A8BU, DX-A8BV, DX-A8BX, DX-A8BZ, DX-AATS, DX-AB2E, DX-AB2F, DX-AB2G, DX-AB2H, DX-AB2J, DX-AB2L, DX-AB2O, DX-AB2P, DX-AB2Q, DX-AB2S, DX-AB2T, DX-AB2V, DX-AB2W, DX-AB2X, DX-AB2Z, DX-AB30, DX-AB32, DX-AB35, DX-AB36, DX-AB37, DX-AB3A, DX-AB3B, DX-AB3C, FX-A2QS, FX-A3NJ, FX-A3NK, FX-A3RE, FX-A3TO, FX-A48G, FX-A76Y, FX-A8OO, HB-A2OT, HB-A3L4, HB-A3YV, HB-A43Z, HB-A5W3, HS-A5N7, HS-A5N8, HS-A5N9, IE-A3OV, IE-A4EH, IE-A4EI, IE-A4EJ, IE-A4EK, IE-A6BZ, IF-A4AJ, IF-A4AK, IS-A3K6, IS-A3K7, IS-A3K8, IS-A3KA, IW-A3M4, IW-A3M5, IW-A3M6, JV-A5VE, JV-A5VF, JV-A75J, K1-A3PN, K1-A3PO, K1-A42W, K1-A42X, K1-A6RT, K1-A6RU, K1-A6RV, KD-A5QS, KD-A5QT, KD-A5QU, KF-A41W, LI-A67I, LI-A9QH, MB-A5Y8, MB-A5Y9, MB-A5YA, MB-A8JK, MB-A8JL, MJ-A68H, MJ-A68J, MJ-A850, MO-A47P, MO-A47R, N1-A6IA, PC-A5DK, PC-A5DL, PC-A5DM, PC-A5DN, PC-A5DO, PC-A5DP, QC-A6FX, QC-A7B5, QC-AA9N, QQ-A5V2, QQ-A5V9, QQ-A5VA, QQ-A5VB, QQ-A5VC, QQ-A5VD, QQ-A8VB, QQ-A8VD, QQ-A8VF, QQ-A8VG, QQ-A8VH, RN-A68Q, RN-AAAQ, SG-A6Z4, SG-A6Z7, SG-A849, SI-A71O, SI-A71P, SI-A71Q, SI-AA8B, SI-AA8C, UE-A6QT, UE-A6QU, VT-A80G, VT-A80J, VT-AB3D, WK-A8XO, WK-A8XQ, WK-A8XS, WK-A8XT, WK-A8XX, WK-A8XY, WK-A8XZ, WK-A8Y0, WP-A9GB, X2-A95T, X6-A7W8, X6-A7WA, X6-A7WB, X6-A7WC, X6-A7WD, X6-A8C2, X6-A8C3, X6-A8C4, X6-A8C5, X6-A8C6, X6-A8C7, X9-A971, X9-A973, Z4-A8JB, Z4-A9VC, Z4-AAPF, Z4-AAPG.
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Testicular Germ Cell Tumors (150 samples):
- •
Source T23 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
2G-AAEW, 2G-AAEX, 2G-AAF1, 2G-AAF4, 2G-AAF6, 2G-AAF8, 2G-AAFE, 2G-AAFG, 2G-AAFH, 2G-AAFI, 2G-AAFJ, 2G-AAFL, 2G-AAFM, 2G-AAFN, 2G-AAFO, 2G-AAFV, 2G-AAFY, 2G-AAFZ, 2G-AAG0, 2G-AAG3, 2G-AAG5, 2G-AAG6, 2G-AAG7, 2G-AAG8, 2G-AAG9, 2G-AAGA, 2G-AAGC, 2G-AAGE, 2G-AAGF, 2G-AAGG, 2G-AAGI, 2G-AAGJ, 2G-AAGK, 2G-AAGM, 2G-AAGN, 2G-AAGO, 2G-AAGP, 2G-AAGS, 2G-AAGT, 2G-AAGV, 2G-AAGW, 2G-AAGX, 2G-AAGY, 2G-AAGZ, 2G-AAH0, 2G-AAH2, 2G-AAH3, 2G-AAH4, 2G-AAH8, 2G-AAHA, 2G-AAHC, 2G-AAHG, 2G-AAHL, 2G-AAHN, 2G-AAHP, 2G-AAHT, 2G-AAKD, 2G-AAKG, 2G-AAKH, 2G-AAKL, 2G-AAKM, 2G-AAKO, 2G-AAL5, 2G-AAL7, 2G-AALF, 2G-AALG, 2G-AALN, 2G-AALO, 2G-AALP, 2G-AALQ, 2G-AALR, 2G-AALS, 2G-AALT, 2G-AALW, 2G-AALX, 2G-AALY, 2G-AALZ, 2G-AAM2, 2G-AAM3, 2G-AAM4, 2X-A9D5, 2X-A9D6, 4K-AA1G, 4K-AA1H, 4K-AA1I, 4K-AAAL, S6-A8JW, S6-A8JX, S6-A8JY, SB-A6J6, SB-A76C, SN-A6IS, SN-A84W, SN-A84X, SN-A84Y, SO-A8JP, VF-A8A8, VF-A8A9, VF-A8AA, VF-A8AB, VF-A8AC, VF-A8AD, VF-A8AE, W4-A7U2, W4-A7U3, W4-A7U4, WZ-A7V3, WZ-A7V4, WZ-A7V5, WZ-A8D5, X3-A8G4, XE-A8H1, XE-A8H4, XE-A8H5, XE-A9SE, XE-AANI, XE-AANJ, XE-AANR, XE-AANV, XE-AAO3, XE-AAO4, XE-AAO6, XE-AAOB, XE-AAOC, XE-AAOD, XE-AAOF, XE-AAOJ, XE-AAOL, XY-A89B, XY-A8S2, XY-A8S3, XY-A9T9, YU-A90P, YU-A90Q, YU-A90S, YU-A90W, YU-A90Y, YU-A912, YU-A94D, YU-A94I, YU-AA4L, YU-AA61, ZM-AA05, ZM-AA06, ZM-AA0B, ZM-AA0D, ZM-AA0E, ZM-AA0F, ZM-AA0H, ZM-AA0N.
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Thymoma (123 samples):
- •
Source T24 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
3G-AB0O, 3G-AB0Q, 3G-AB0T, 3G-AB14, 3G-AB19, 3Q-A9WF, 3S-A8YW, 3S-AAYX, 3T-AA9L, 4V-A9QI, 4V-A9QJ, 4V-A9QL, 4V-A9QM, 4V-A9QN, 4V-A9QQ, 4V-A9QR, 4V-A9QS, 4V-A9QT, 4V-A9QU, 4V-A9QW, 4V-A9QX, 4X-A9F9, 4X-A9FA, 4X-A9FB, 4X-A9FC, 4X-A9FD, 5G-A9ZZ, 5K-AAAP, 5U-AB0D, 5U-AB0E, 5U-AB0F, 5V-A9RR, X7-A8D6, X7-A8D7, X7-A8D8, X7-A8D9, X7-A8DB, X7-A8DC, X7-A8DD, X7-A8DE, X7-A8DF, X7-A8DG, X7-A8DI, X7-A8DJ, X7-A8M0, X7-A8M1, X7-A8M3, X7-A8M4, X7-A8M5, X7-A8M6, X7-A8M7, X7-A8M8, XH-A853, XM-A8R8, XM-A8R9, XM-A8RB, XM-A8RC, XM-A8RD, XM-A8RE, XM-A8RF, XM-A8RG, XM-A8RH, XM-A8RI, XM-A8RL, XM-AAZ1, XM-AAZ2, XM-AAZ3, XU-A92O, XU-A92Q, XU-A92R, XU-A92T, XU-A92U, XU-A92V, XU-A92W, XU-A92X, XU-A92Y, XU-A92Z, XU-A930, XU-A931, XU-A932, XU-A933, XU-A936, XU-AAXW, XU-AAXX, XU-AAXY, XU-AAXZ, XU-AAY0, XU-AAY1, YT-A95D, YT-A95E, YT-A95F, YT-A95G, YT-A95H, ZB-A961, ZB-A962, ZB-A963, ZB-A964, ZB-A965, ZB-A966, ZB-A969, ZB-A96A, ZB-A96B, ZB-A96C, ZB-A96D, ZB-A96E, ZB-A96F, ZB-A96G, ZB-A96H, ZB-A96I, ZB-A96K, ZB-A96L, ZB-A96M, ZB-A96O, ZB-A96P, ZB-A96Q, ZB-A96R, ZB-A96V, ZC-AAA7, ZC-AAAA, ZC-AAAF, ZC-AAAH, ZL-A9V6, ZT-A8OM.
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Thyroid Cancer (409 samples):
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Source T25 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
BJ-A0YZ, BJ-A0Z0, BJ-A0Z2, BJ-A0Z3, BJ-A0Z5, BJ-A0Z9, BJ-A0ZA, BJ-A0ZB, BJ-A0ZC, BJ-A0ZE, BJ-A0ZF, BJ-A0ZG, BJ-A0ZH, BJ-A0ZJ, BJ-A18Y, BJ-A18Z, BJ-A190, BJ-A191, BJ-A192, BJ-A28R, BJ-A28S, BJ-A28T, BJ-A28V, BJ-A28X, BJ-A28Z, BJ-A290, BJ-A2N7, BJ-A2N8, BJ-A2N9, BJ-A2NA, BJ-A2P4, BJ-A3EZ, BJ-A3F0, BJ-A3PR, BJ-A3PT, BJ-A3PU, BJ-A45D, BJ-A45E, BJ-A45F, BJ-A45G, BJ-A45I, BJ-A45J, BJ-A45K, BJ-A4O8, BJ-A4O9, CE-A13K, CE-A27D, CE-A3MD, CE-A3ME, CE-A482, CE-A484, CE-A485, DE-A0XZ, DE-A0Y2, DE-A0Y3, DE-A2OL, DE-A3KN, DE-A4M8, DE-A4M9, DJ-A13L, DJ-A13M, DJ-A13O, DJ-A13P, DJ-A13R, DJ-A13S, DJ-A13T, DJ-A13U, DJ-A13V, DJ-A13W, DJ-A13X, DJ-A1QD, DJ-A1QE, DJ-A1QF, DJ-A1QG, DJ-A1QH, DJ-A1QI, DJ-A1QL, DJ-A1QM, DJ-A1QN, DJ-A1QO, DJ-A1QQ, DJ-A2PN, DJ-A2PO, DJ-A2PP, DJ-A2PQ, DJ-A2PR, DJ-A2PS, DJ-A2PT, DJ-A2PU, DJ-A2PV, DJ-A2PW, DJ-A2PX, DJ-A2PY, DJ-A2PZ, DJ-A2Q0, DJ-A2Q1, DJ-A2Q2, DJ-A2Q3, DJ-A2Q4, DJ-A2Q5, DJ-A2Q6, DJ-A2Q7, DJ-A2Q8, DJ-A2Q9, DJ-A2QA, DJ-A2QB, DJ-A2QC, DJ-A3UK, DJ-A3UM, DJ-A3UN, DJ-A3UO, DJ-A3UP, DJ-A3UQ, DJ-A3UR, DJ-A3US, DJ-A3UT, DJ-A3UU, DJ-A3UV, DJ-A3UW, DJ-A3UX, DJ-A3UY, DJ-A3V7, DJ-A3VA, DJ-A3VB, DJ-A3VE, DJ-A3VF, DJ-A3VJ, DJ-A3VK, DJ-A3VL, DJ-A3VM, DJ-A4UL, DJ-A4UP, DJ-A4UT, DJ-A4UW, DJ-A4V0, DJ-A4V2, DJ-A4V4, DJ-A4V5, DO-A1JZ, DO-A1K0, DO-A2HM, E3-A3DY, E3-A3DZ, E3-A3E0, E3-A3E1, E3-A3E2, E3-A3E3, E3-A3E5, E8-A242, E8-A2EA, E8-A413, E8-A415, E8-A418, E8-A419, E8-A433, E8-A436, E8-A437, E8-A44K, E8-A44M, EL-A3CL, EL-A3CM, EL-A3CN, EL-A3CO, EL-A3CP, EL-A3CR, EL-A3CS, EL-A3CT, EL-A3CU, EL-A3CV, EL-A3CW, EL-A3CX, EL-A3CY, EL-A3CZ, EL-A3D0, EL-A3D1, EL-A3D4, EL-A3D5, EL-A3D6, EL-A3GO, EL-A3GP, EL-A3GQ, EL-A3GR, EL-A3GS, EL-A3GU, EL-A3GV, EL-A3GW, EL-A3GX, EL-A3GY, EL-A3GZ, EL-A3H1, EL-A3H2, EL-A3H3, EL-A3H4, EL-A3H5, EL-A3H7, EL-A3H8, EL-A3MW, EL-A3MX, EL-A3MY, EL-A3MZ, EL-A3N2, EL-A3N3, EL-A3T0, EL-A3T1, EL-A3T2, EL-A3T3, EL-A3T6, EL-A3T7, EL-A3T8, EL-A3T9, EL-A3TA, EL-A3TB, EL-A3ZH, EL-A3ZK, EL-A3ZN, EL-A3ZQ, EL-A3ZR, EL-A3ZT, EL-A4JV, EL-A4JW, EL-A4JX, EL-A4JZ, EL-A4K0, EL-A4K2, EL-A4K4, EL-A4K6, EL-A4KD, EL-A4KG, EL-A4KH, EL-A4KI, EM-A1CS, EM-A1CT, EM-A1CU, EM-A1CV, EM-A1CW, EM-A1YA, EM-A1YB, EM-A1YC, EM-A1YD, EM-A1YE, EM-A22I, EM-A22J, EM-A22K, EM-A22L, EM-A22M, EM-A22N, EM-A22O, EM-A22P, EM-A22Q, EM-A2CJ, EM-A2CK, EM-A2CL, EM-A2CM, EM-A2CN, EM-A2CO, EM-A2CP, EM-A2CQ, EM-A2CR, EM-A2CT, EM-A2CU, EM-A2OV, EM-A2OW, EM-A2OX, EM-A2OY, EM-A2OZ, EM-A2P0, EM-A2P1, EM-A2P2, EM-A2P3, EM-A3AI, EM-A3AJ, EM-A3AK, EM-A3AL, EM-A3AN, EM-A3AO, EM-A3AP, EM-A3AQ, EM-A3AR, EM-A3FJ, EM-A3FK, EM-A3FL, EM-A3FM, EM-A3FN, EM-A3FO, EM-A3FP, EM-A3FQ, EM-A3FR, EM-A3O3, EM-A3O6, EM-A3O7, EM-A3O8, EM-A3O9, EM-A3OA, EM-A3OB, EM-A4FK, EM-A4FM, EM-A4FO, EM-A4FQ, EM-A4FR, EM-A4FV, EM-A4G1, ET-A25G, ET-A25I, ET-A25J, ET-A25K, ET-A25O, ET-A25R, ET-A2MY, ET-A2MZ, ET-A2N0, ET-A2N1, ET-A2N4, ET-A2N5, ET-A39I, ET-A39J, ET-A39K, ET-A39L, ET-A39M, ET-A39N, ET-A39O, ET-A39P, ET-A39R, ET-A39S, ET-A39T, ET-A3BN, ET-A3BO, ET-A3BP, ET-A3BQ, ET-A3BS, ET-A3BT, ET-A3BU, ET-A3BV, ET-A3BW, ET-A3BX, ET-A3DO, ET-A3DP, ET-A3DQ, ET-A3DR, ET-A3DS, ET-A3DT, ET-A3DU, ET-A3DV, ET-A3DW, ET-A40S, ET-A4KN, FE-A22Z, FE-A230, FE-A231, FE-A232, FE-A233, FE-A234, FE-A235, FE-A236, FE-A237, FE-A238, FE-A23A, FE-A3PA, FE-A3PB, FE-A3PC, FE-A3PD, FK-A3S3, FK-A3SB, FK-A3SD, FK-A3SE, FK-A3SG, FK-A3SH, FY-A2QD, FY-A3BL, FY-A3I4, FY-A3I5, FY-A3NM, FY-A3NN, FY-A3NP, FY-A3ON, FY-A3R6, FY-A3R7, FY-A3R8, FY-A3R9, FY-A3RA, FY-A3W9, FY-A3WA, FY-A40K, FY-A4B3, GE-A2C6, H2-A26U, H2-A2K9, H2-A3RH, H2-A3RI, H2-A421, IM-A3EB, IM-A3ED, IM-A3U2, IM-A3U3, J8-A3NZ, J8-A3O0, J8-A3O1, J8-A3YE, J8-A3YH, J8-A4HW, KS-A41J, KS-A4I5, KS-A4I9, KS-A4IB, L6-A4EP, L6-A4ET, L6-A4EU, MK-A4N6, MK-A4N7, MK-A4N9.
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Uterine Cancer (305 samples):
Source T26 = TCGA (see Acknowledgments (main text)). Sample IDs are of the form TCGA-*, where * is:
A5-A0G3, A5-A0G5, A5-A0G9, A5-A0GA, A5-A0GB, A5-A0GD, A5-A0GE, A5-A0GH, A5-A0GI, A5-A0GJ, A5-A0GM, A5-A0GN, A5-A0GP, A5-A0GQ, A5-A0GU, A5-A0GV, A5-A0GW, A5-A0GX, A5-A0R6, A5-A0R7, A5-A0R8, A5-A0R9, A5-A0RA, A5-A0VO, A5-A0VP, A5-A0VQ, AJ-A23M, AP-A051, AP-A052, AP-A053, AP-A054, AP-A056, AP-A059, AP-A05A, AP-A05D, AP-A05H, AP-A05J, AP-A05N, AP-A05P, AP-A0L8, AP-A0L9, AP-A0LD, AP-A0LE, AP-A0LF, AP-A0LG, AP-A0LH, AP-A0LI, AP-A0LJ, AP-A0LL, AP-A0LM, AP-A0LN, AP-A0LO, AP-A0LP, AP-A0LQ, AP-A0LT, AP-A0LV, AP-A1DQ, AX-A05S, AX-A05T, AX-A05U, AX-A05W, AX-A05Y, AX-A05Z, AX-A060, AX-A062, AX-A063, AX-A064, AX-A06B, AX-A06H, AX-A06L, AX-A0IS, AX-A0IU, AX-A0IW, AX-A0J0, AX-A0J1, AX-A1C7, AX-A1C8, AX-A1CP, AX-A2H5, AX-A2HF, B5-A0JN, B5-A0JR, B5-A0JS, B5-A0JT, B5-A0JV, B5-A0JY, B5-A0JZ, B5-A0K0, B5-A0K1, B5-A0K2, B5-A0K3, B5-A0K4, B5-A0K6, B5-A0K7, B5-A0K8, B5-A0K9, B5-A11E, B5-A11F, B5-A11G, B5-A11H, B5-A11I, B5-A11J, B5-A11M, B5-A11N, B5-A11O, B5-A11Q, B5-A11R, B5-A11S, B5-A11U, B5-A11V, B5-A11W, B5-A11X, B5-A11Y, B5-A11Z, B5-A121, B5-A1MU, B5-A1MY, BG-A0LW, BG-A0LX, BG-A0M0, BG-A0M2, BG-A0M3, BG-A0M4, BG-A0M6, BG-A0M7, BG-A0M8, BG-A0M9, BG-A0MC, BG-A0MG, BG-A0MI, BG-A0MO, BG-A0MQ, BG-A0MS, BG-A0MT, BG-A0MU, BG-A0RY, BG-A0VT, BG-A0VV, BG-A0VW, BG-A0VX, BG-A0VZ, BG-A0W1, BG-A0W2, BG-A0YU, BG-A0YV, BG-A186, BG-A187, BG-A18A, BG-A18B, BG-A18C, BG-A2AE, BK-A0C9, BK-A0CA, BK-A0CB, BK-A0CC, BK-A139, BK-A13C, BS-A0T9, BS-A0TA, BS-A0TC, BS-A0TD, BS-A0TE, BS-A0TG, BS-A0TI, BS-A0TJ, BS-A0U5, BS-A0U7, BS-A0U8, BS-A0U9, BS-A0UA, BS-A0UF, BS-A0UJ, BS-A0UL, BS-A0UM, BS-A0UT, BS-A0UV, BS-A0V6, BS-A0V7, BS-A0V8, BS-A0WQ, D1-A0ZN, D1-A0ZO, D1-A0ZP, D1-A0ZQ, D1-A0ZR, D1-A0ZS, D1-A0ZU, D1-A0ZV, D1-A0ZZ, D1-A101, D1-A102, D1-A103, D1-A15V, D1-A15W, D1-A15X, D1-A15Z, D1-A160, D1-A161, D1-A163, D1-A165, D1-A167, D1-A168, D1-A169, D1-A16B, D1-A16D, D1-A16E, D1-A16F, D1-A16G, D1-A16I, D1-A16J, D1-A16N, D1-A16O, D1-A16Q, D1-A16R, D1-A16S, D1-A16X, D1-A16Y, D1-A174, D1-A176, D1-A177, D1-A17A, D1-A17B, D1-A17C, D1-A17D, D1-A17F, D1-A17H, D1-A17K, D1-A17L, D1-A17M, D1-A17N, D1-A17Q, D1-A17R, D1-A17S, D1-A17T, D1-A17U, D1-A1NU, D1-A1NX, DI-A0WH, DI-A1NN, E6-A1LZ, EO-A1Y5, EO-A1Y8, EY-A1GS, EY-A212, FI-A2D2, FI-A2EW, FI-A2EX, FI-A2F8, N5-A4R8, N5-A4RA, N5-A4RD, N5-A4RF, N5-A4RJ, N5-A4RM, N5-A4RN, N5-A4RO, N5-A4RS, N5-A4RT, N5-A4RU, N5-A4RV, N5-A59E, N5-A59F, N6-A4V9, N6-A4VC, N6-A4VD, N6-A4VE, N6-A4VF, N6-A4VG, N7-A4Y0, N7-A4Y5, N7-A4Y8, N7-A59B, N8-A4PI, N8-A4PL, N8-A4PM, N8-A4PN, N8-A4PO, N8-A4PP, N8-A4PQ, N8-A56S, N9-A4PZ, N9-A4Q1, N9-A4Q3, N9-A4Q4, N9-A4Q7, N9-A4Q8, NA-A4QV, NA-A4QW, NA-A4QX, NA-A4QY, NA-A4R0, NA-A4R1, NA-A5I1, ND-A4W6, ND-A4WA, ND-A4WC, ND-A4WF, NF-A4WU, NF-A4WX, NF-A4X2, NF-A5CP, NG-A4VU, NG-A4VW, QM-A5NM, QN-A5NN.