Functional Characteristics of General Odorant Binding Proteins in the Sugarcane Borer (Tryporyza intacta)
Abstract
1. Introduction
2. Materials and Methods
2.1. Multisequence Alignment and Phylogenetic Analyses of GOBPs
2.2. Homologous Sequence Motif and Conservation Analysis of GOBP1-2 Proteins
2.3. Prokaryotic Expression and Purification of TintGOBPs
2.4. Fluorescence Binding Assays
2.5. Protein Modeling and Molecular Docking
3. Results
3.1. Amino Acid Sequence Analysis of TintGOBP1-2 and Alignment to Homologs of Other Species
3.2. Motif Pattern Analysis
3.3. Expression and Purification of TintGOBP1-2
3.4. Fluorescent Ligand Binding Activities
3.5. Molecular Docking
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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| No. | Compounds | TintGOBP1 | TintGOBP2 | ||
|---|---|---|---|---|---|
| IC50 (μM) | Ki (μM) | IC50 (μM) | Ki (μM) | ||
| 1 | Linalool | 16.65 | 16.31 | 23.70 | 22.08 |
| 2 | (Z)-3-Hexen-1-ol | 20.35 | 19.93 | 18.68 | 17.42 |
| 3 | Acetophenone | 24.57 | 24.07 | - | - |
| 4 | Limonene | 20.47 | 20.04 | 14.23 | 13.31 |
| 5 | Methyl salicylate | 22.67 | 22.20 | - | - |
| 6 | Terpineol | 24.36 | 23.86 | 17.88 | 16.70 |
| 7 | β-Ionone | 10.49 | 10.28 | 18.79 | 17.52 |
| 8 | Tetradecane | - | - | - | - |
| 9 | Pentadecane | - | - | - | - |
| 10 | Hexadecane | - | - | - | - |
| 11 | Heptadecane | - | - | - | - |
| 12 | Octadecane | - | - | - | - |
| 13 | Nonadecane | - | - | - | - |
| 14 | Eicosane | - | - | - | - |
| 15 | Heneicosane | 26.34 | 24.84 | - | - |
| 16 | Cedrol | - | - | - | - |
| 17 | Nonanal | - | - | - | - |
| 18 | Decanal | - | - | - | - |
| 19 | Undecanal | - | - | - | - |
| 20 | Tetradecanoic Acid | - | - | - | - |
| 21 | Nonanoic acid | - | - | - | - |
| 22 | 1-Hexadecanol | - | - | - | - |
| Compounds | Cdocker Interaction Energy (Kcal/mol) | Residues Forming H-Bond with Ligand | ||
|---|---|---|---|---|
| GOBP1 | GOBP2 | GOBP1 | GOBP2 | |
| Linalool | −5.33 | −5.46 | Thr5/Trp33 | Thr5/Trp33 |
| (Z)-3-Hexen-1-ol | −4.23 | 3.30 | Met64/Ile90/Ile107/Ile110 | Y77/Q95 |
| Acetophenone | −3.96 | - | - | - |
| Limonene | −5.59 | −5.36 | - | |
| Methyl salicylate | −3.74 | - | Met64/Glu94/Ala111 | Thr5/Trp33 |
| Terpineol | −5.64 | −6.07 | Thr5/Trp33 | Thr5/Trp33 |
| β-Ionone | −5.81 | −6.05 | - | - |
| Heneicosane | −6.86 | - | - | - |
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© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
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Liu, S.; Hu, Y.; Li, Y.; Luo, P.; Liu, Y.; Huang, J.; Ai, H. Functional Characteristics of General Odorant Binding Proteins in the Sugarcane Borer (Tryporyza intacta). Genes 2026, 17, 1051. https://doi.org/10.3390/genes17091051
Liu S, Hu Y, Li Y, Luo P, Liu Y, Huang J, Ai H. Functional Characteristics of General Odorant Binding Proteins in the Sugarcane Borer (Tryporyza intacta). Genes. 2026; 17(9):1051. https://doi.org/10.3390/genes17091051
Chicago/Turabian StyleLiu, Siyu, Yuwei Hu, Yueyi Li, Piao Luo, Yuying Liu, Jixia Huang, and Hui Ai. 2026. "Functional Characteristics of General Odorant Binding Proteins in the Sugarcane Borer (Tryporyza intacta)" Genes 17, no. 9: 1051. https://doi.org/10.3390/genes17091051
APA StyleLiu, S., Hu, Y., Li, Y., Luo, P., Liu, Y., Huang, J., & Ai, H. (2026). Functional Characteristics of General Odorant Binding Proteins in the Sugarcane Borer (Tryporyza intacta). Genes, 17(9), 1051. https://doi.org/10.3390/genes17091051
