RETRACTED: RADseq Data Suggest Occasional Hybridization between Microcebus murinus and M. ravelobensis in Northwestern Madagascar
Abstract
:1. Introduction
2. Materials and Methods
2.1. Study Area and Sample Collection
2.2. DNA Extraction, RAD Sequencing, and Genotyping
2.3. Hybrid Identification
2.4. Test for Introgression between M. murinus and M. ravelobensis
2.5. Demographic Modelling with Fastsimcoal2
3. Results
3.1. RADseq Data Statistics
3.2. Identification of Individuals with Admixed Ancestry
3.3. Test for Introgression between M. murinus and M. ravelobensis
3.4. Demographic Modelling with Fastsimcoal2
4. Discussion
4.1. Occasional Hybridization between M. murinus and M. ravelobensis
4.2. Hybridization between M. murinus and M. ravelobensis: A Recent Event
4.3. Under Which Circumstances May Hybridization Occur?
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Category | Model | Topology | Log10 (Lhood) | ΔLhood | # Parameters | AIC | ΔAIC/ Category | Rank |
---|---|---|---|---|---|---|---|---|
Panmictic models | P1 | Null model | −316,617.1 | 24,660.7 | 3 | 1,458,344.3 | 93,258.4 | 3° |
P2 | Gene flow | −299,665.5 | 7709.1 | 4 | 1,380,267.3 | 15,181.3 | 2° | |
P3 | Changing | −296,368.6 | 4412.3 | 6 | 1,365,085.9 | 0.0 | 1° | |
Structured models | M1 | Null model | −368,272.5 | 25,697.0 | 6 | 1,696,275.0 | 77,170.0 | 4° |
M2 | Ancient gene flow | −355,664.2 | 13,088.7 | 7 | 1,638,203.4 | 19,098.4 | 3° | |
M3 | Recent gene flow | −351,517.8 | 8942.3 | 7 | 1,619,105.0 | 0.0 | 1° | |
M4 | Ancient and recent gene flow | −354,384.8 | 11,809.4 | 7 | 1,632,310.6 | 13,205.6 | 2° | |
M3 vs. M5 | M3 | Recent gene flow | −351,517.8 | 8942.3 | 7 | 1,619,105.0 | 154.8 | 2° |
M5 | Recent gene flow and asymmetric structure | −351,483.8 | 8908.3 | 8 | 1,618,950.2 | 0.0 | 1° |
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Teixeira, H.; van Elst, T.; Ramsay, M.S.; Rakotondravony, R.; Salmona, J.; Yoder, A.D.; Radespiel, U. RETRACTED: RADseq Data Suggest Occasional Hybridization between Microcebus murinus and M. ravelobensis in Northwestern Madagascar. Genes 2022, 13, 913. https://doi.org/10.3390/genes13050913
Teixeira H, van Elst T, Ramsay MS, Rakotondravony R, Salmona J, Yoder AD, Radespiel U. RETRACTED: RADseq Data Suggest Occasional Hybridization between Microcebus murinus and M. ravelobensis in Northwestern Madagascar. Genes. 2022; 13(5):913. https://doi.org/10.3390/genes13050913
Chicago/Turabian StyleTeixeira, Helena, Tobias van Elst, Malcolm S. Ramsay, Romule Rakotondravony, Jordi Salmona, Anne D. Yoder, and Ute Radespiel. 2022. "RETRACTED: RADseq Data Suggest Occasional Hybridization between Microcebus murinus and M. ravelobensis in Northwestern Madagascar" Genes 13, no. 5: 913. https://doi.org/10.3390/genes13050913
APA StyleTeixeira, H., van Elst, T., Ramsay, M. S., Rakotondravony, R., Salmona, J., Yoder, A. D., & Radespiel, U. (2022). RETRACTED: RADseq Data Suggest Occasional Hybridization between Microcebus murinus and M. ravelobensis in Northwestern Madagascar. Genes, 13(5), 913. https://doi.org/10.3390/genes13050913