Population Genetic Data of 30 Insertion-Deletion Markers in the Polish Population
Abstract
:1. Introduction
2. Material and Methods
2.1. Sampling
2.2. PCR Amplification and InDel Genotyping
2.3. Statistical Analyses
3. Results
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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HLD | Chromosomal | GenBank | DIP(−) | DIP(+) | Ho | He | p HWE | PIC | PD | PE | TPI |
---|---|---|---|---|---|---|---|---|---|---|---|
Location | SNP ID | ||||||||||
HLD77 | 7q31.1 | rs1611048 | 0.4422 | 0.5578 | 0.4937 | 0.4628 | 0.1224 | 0.3716 | 0.6348 | 0.1569 | 0.9307 |
HLD45 | 2q31.1 | rs2307959 | 0.4739 | 0.5261 | 0.4990 | 0.5040 | 0.8096 | 0.3743 | 0.6216 | 0.1910 | 1.0080 |
HLD131 | 7q36.2 | rs1611001 | 0.4564 | 0.5436 | 0.4966 | 0.4628 | 0.0934 | 0.3731 | 0.6377 | 0.1569 | 0.9307 |
HLD70 | 6q16.1 | rs2307652 | 0.4731 | 0.5269 | 0.4989 | 0.4929 | 0.8100 | 0.3743 | 0.6270 | 0.1813 | 0.9859 |
HLD6 | 16q13 | rs1610905 | 0.4707 | 0.5293 | 0.4987 | 0.4564 | 0.0384 | 0.3741 | 0.6422 | 0.1521 | 0.9198 |
HLD111 | 17p11.2 | rs1305047 | 0.4976 | 0.5024 | 0.5004 | 0.4818 | 0.3837 | 0.3750 | 0.6336 | 0.1720 | 0.9648 |
HLD58 | 5q14.1 | rs1610937 | 0.4461 | 0.5539 | 0.4946 | 0.4739 | 0.2955 | 0.3721 | 0.6312 | 0.1656 | 0.9503 |
HLD56 | 4q25 | rs2308292 | 0.3352 | 0.6648 | 0.4460 | 0.4358 | 0.5868 | 0.3464 | 0.5966 | 0.1372 | 0.8862 |
HLD118 | 20p11.1 | rs16438 | 0.5143 | 0.4857 | 0.5000 | 0.4707 | 0.1451 | 0.3748 | 0.6380 | 0.1631 | 0.9446 |
HLD92 | 11q22.2 | rs17174476 | 0.5919 | 0.4081 | 0.4835 | 0.4707 | 0.5146 | 0.3664 | 0.6215 | 0.1631 | 0.9446 |
HLD93 | 12q22 | rs2307570 | 0.4477 | 0.5523 | 0.4949 | 0.5436 | 0.0157 | 0.3722 | 0.5949 | 0.2286 | 1.0955 |
HLD99 | 14q23.1 | rs2308163 | 0.4097 | 0.5903 | 0.4841 | 0.4929 | 0.6853 | 0.3667 | 0.6122 | 0.1813 | 0.9859 |
HLD88 | 9q22.32 | rs8190570 | 0.5895 | 0.4105 | 0.4843 | 0.4881 | 0.8711 | 0.3669 | 0.6147 | 0.1773 | 0.9768 |
HLD101 | 15q26.1 | rs2307433 | 0.4786 | 0.5214 | 0.4995 | 0.4913 | 0.7021 | 0.3745 | 0.6283 | 0.1800 | 0.9829 |
HLD67 | 5q33.2 | rs1305056 | 0.3954 | 0.6046 | 0.4785 | 0.4834 | 0.8013 | 0.3638 | 0.6110 | 0.1734 | 0.9678 |
HLD83 | 8p22 | rs2308072 | 0.5127 | 0.4873 | 0.5001 | 0.5119 | 0.5797 | 0.3748 | 0.6185 | 0.1981 | 1.0244 |
HLD114 | 17p13.3 | rs2307581 | 0.6513 | 0.3487 | 0.4545 | 0.4469 | 0.7246 | 0.3510 | 0.6015 | 0.1451 | 0.9040 |
HLD48 | 2q11.2 | rs28369942 | 0.4770 | 0.5230 | 0.4993 | 0.4628 | 0.0669 | 0.3745 | 0.6405 | 0.1569 | 0.9307 |
HLD124 | 22q12.3 | rs6481 | 0.3574 | 0.6426 | 0.4597 | 0.4612 | 1.0000 | 0.3538 | 0.6015 | 0.1557 | 0.9279 |
HLD122 | 21q22.11 | rs8178524 | 0.5388 | 0.4612 | 0.4974 | 0.5261 | 0.1444 | 0.3735 | 0.6079 | 0.2114 | 1.0552 |
HLD125 | 22q11.23 | rs16388 | 0.4889 | 0.5111 | 0.5002 | 0.4897 | 0.6298 | 0.3749 | 0.6297 | 0.1786 | 0.9798 |
HLD64 | 5q12.3 | rs1610935 | 0.4532 | 0.5468 | 0.4960 | 0.4501 | 0.0258 | 0.3728 | 0.6419 | 0.1474 | 0.9092 |
HLD81 | 7q21.3 | rs17879936 | 0.5689 | 0.4311 | 0.4909 | 0.4437 | 0.0184 | 0.3702 | 0.6389 | 0.1428 | 0.8989 |
HLD136 | 22q13.1 | rs16363 | 0.5475 | 0.4525 | 0.4959 | 0.4834 | 0.5776 | 0.3727 | 0.6284 | 0.1734 | 0.9678 |
HLD133 | 3p22.1 | rs2067235 | 0.4461 | 0.5539 | 0.4946 | 0.4739 | 0.2933 | 0.3721 | 0.6312 | 0.1656 | 0.9503 |
HLD97 | 13q12.3 | rs17238892 | 0.4493 | 0.5507 | 0.4952 | 0.4834 | 0.5686 | 0.3724 | 0.6278 | 0.1734 | 0.9678 |
HLD40 | 1p32.3 | rs2307956 | 0.5634 | 0.4366 | 0.4924 | 0.4580 | 0.0871 | 0.3709 | 0.6353 | 0.1533 | 0.9225 |
HLD128 | 1q31.3 | rs2307924 | 0.5563 | 0.4437 | 0.4941 | 0.4691 | 0.2199 | 0.3718 | 0.6327 | 0.1619 | 0.9418 |
HLD39 | 1p22.1 | rs17878444 | 0.6268 | 0.3732 | 0.4682 | 0.4263 | 0.0265 | 0.3584 | 0.6216 | 0.1307 | 0.8715 |
HLD84 | 8q24.12 | rs3081400 | 0.4532 | 0.5468 | 0.4960 | 0.4945 | 1.0000 | 0.3728 | 0.6234 | 0.1827 | 0.9890 |
ESP | MEX | KOR | FIN | SOM | PAK | ZAZ | IRQ | LTU | SLO | TUR | VIE | NGA | BHR | ZAA | ANG | MOZ | BRA | CHN | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
POL | 0.037 | 0.064 | 0.124 | 0.044 | 0.107 | 0.079 | 0.163 | 0.049 | 0.036 | 0.033 | 0.045 | 0.106 | 0.155 | 0.053 | 0.035 | 0.098 | 0.063 | 0.050 | 0.116 |
ESP | * | 0.056 | 0.130 | 0.047 | 0.090 | 0.090 | 0.144 | 0.043 | 0.039 | 0.038 | 0.039 | 0.108 | 0.135 | 0.043 | 0.034 | 0.082 | 0.051 | 0.043 | 0.122 |
MEX | + | * | 0.129 | 0.062 | 0.098 | 0.127 | 0.142 | 0.056 | 0.064 | 0.063 | 0.050 | 0.116 | 0.128 | 0.052 | 0.057 | 0.085 | 0.059 | 0.045 | 0.120 |
KOR | + | + | * | 0.136 | 0.166 | 0.193 | 0.224 | 0.135 | 0.140 | 0.127 | 0.122 | 0.059 | 0.227 | 0.125 | 0.132 | 0.172 | 0.135 | 0.125 | 0.041 |
FIN | + | + | + | * | 0.103 | 0.090 | 0.147 | 0.056 | 0.044 | 0.041 | 0.054 | 0.121 | 0.137 | 0.058 | 0.042 | 0.088 | 0.056 | 0.046 | 0.125 |
SOM | + | + | + | + | * | 0.149 | 0.071 | 0.084 | 0.108 | 0.106 | 0.088 | 0.138 | 0.067 | 0.070 | 0.098 | 0.050 | 0.059 | 0.073 | 0.146 |
PAK | + | + | + | + | + | * | 0.198 | 0.105 | 0.081 | 0.078 | 0.103 | 0.176 | 0.192 | 0.111 | 0.077 | 0.137 | 0.107 | 0.099 | 0.178 |
ZAZ | + | + | + | + | + | + | * | 0.132 | 0.166 | 0.161 | 0.147 | 0.213 | 0.038 | 0.107 | 0.148 | 0.052 | 0.076 | 0.109 | 0.214 |
IRQ | + | + | + | + | + | + | + | * | 0.051 | 0.048 | 0.034 | 0.112 | 0.120 | 0.037 | 0.045 | 0.073 | 0.050 | 0.045 | 0.122 |
LTU | + | + | + | + | + | + | + | * | 0.034 | 0.048 | 0.116 | 0.157 | 0.057 | 0.037 | 0.102 | 0.065 | 0.051 | 0.125 | |
SLO | + | + | + | + | + | + | + | + | * | 0.044 | 0.108 | 0.151 | 0.052 | 0.033 | 0.096 | 0.061 | 0.048 | 0.117 | |
TUR | + | + | + | + | + | + | + | + | + | * | 0.098 | 0.137 | 0.038 | 0.040 | 0.084 | 0.054 | 0.045 | 0.109 | |
VIE | + | + | + | + | + | + | + | + | + | + | + | * | 0.214 | 0.107 | 0.109 | 0.158 | 0.119 | 0.109 | 0.047 |
NGA | + | + | + | + | + | + | + | + | + | + | + | + | * | 0.100 | 0.141 | 0.043 | 0.071 | 0.101 | 0.217 |
BHR | + | + | + | + | + | + | + | + | + | + | + | + | + | * | 0.046 | 0.060 | 0.039 | 0.039 | 0.116 |
ZAA | + | + | + | + | + | + | + | + | + | + | + | + | + | * | 0.087 | 0.054 | 0.042 | 0.119 | |
ANG | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | * | 0.042 | 0.060 | 0.162 |
MOZ | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | * | 0.039 | 0.125 |
BRA | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | * | 0.115 |
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Abreu-Glowacka, M.; Pepinski, W.; Michalak, E.; Konarzewska, M.; Zak, K.; Skawronska, M.; Niemcunowicz-Janica, A.; Soltyszewski, I.; Krajewski, P.; Zaba, C. Population Genetic Data of 30 Insertion-Deletion Markers in the Polish Population. Genes 2022, 13, 1683. https://doi.org/10.3390/genes13101683
Abreu-Glowacka M, Pepinski W, Michalak E, Konarzewska M, Zak K, Skawronska M, Niemcunowicz-Janica A, Soltyszewski I, Krajewski P, Zaba C. Population Genetic Data of 30 Insertion-Deletion Markers in the Polish Population. Genes. 2022; 13(10):1683. https://doi.org/10.3390/genes13101683
Chicago/Turabian StyleAbreu-Glowacka, Monica, Witold Pepinski, Eliza Michalak, Magdalena Konarzewska, Krzysztof Zak, Malgorzata Skawronska, Anna Niemcunowicz-Janica, Ireneusz Soltyszewski, Pawel Krajewski, and Czeslaw Zaba. 2022. "Population Genetic Data of 30 Insertion-Deletion Markers in the Polish Population" Genes 13, no. 10: 1683. https://doi.org/10.3390/genes13101683
APA StyleAbreu-Glowacka, M., Pepinski, W., Michalak, E., Konarzewska, M., Zak, K., Skawronska, M., Niemcunowicz-Janica, A., Soltyszewski, I., Krajewski, P., & Zaba, C. (2022). Population Genetic Data of 30 Insertion-Deletion Markers in the Polish Population. Genes, 13(10), 1683. https://doi.org/10.3390/genes13101683