1. Introduction
Light microscopy has been a cornerstone in biological research, allowing researchers to visualize cells, their substructures, and molecular components. However, the diffraction limit of light, which restricts resolution to approximately 200 nm, has been a significant barrier to observing nanometer-scale biological features under light microscopy. To overcome this, various super-resolution techniques have been developed, such as Stimulated Emission Depletion (STED) microscopy and Stochastic Optical Reconstruction Microscopy (STORM) [
1,
2]. These methods are powerful, but require sophisticated and expensive instrumentation, and their use is limited to fluorescent probes. Expansion microscopy (ExM), first introduced by Chen et al. in 2015, presents a simpler approach for visualizing structures below the diffraction limit by physically expanding the sample [
3].
ExM is based on embedding biological tissues in a swellable hydrogel, which enables isotropic expansion of the sample. This process effectively increases the physical distance between molecules, while maintaining their relative positions, thus permitting high-resolution imaging using conventional microscopy. ExM has been applied to various biological systems, such as cultured cells and tissue sections (mostly of the brain) [
4,
5]. The technique’s ability to achieve 4- to 20-fold expansion of samples has made it particularly valuable in neurobiology, where resolving intracellular and synaptic structures is essential for understanding brain function and disease [
6].
The enteric nervous system (ENS), often referred to as the “second brain,” is a complex network of neurons and glial cells embedded in the gastrointestinal (GI) tract. It consists of two networks, the myenteric and submucosal plexuses, and plays a critical role in regulating GI motility, secretion, and blood flow, as well as interacting with the central nervous system [
7]. The morphology of the ENS has been well-characterized by light- and electron-microscopy techniques [
8,
9,
10,
11,
12]. Still, there has been only a small number of super-resolution studies on the ENS, and none are available on the use of ExM for ENS research [
13,
14]. High-resolution imaging of neural networks within the ENS is crucial for understanding its role in various GI disorders, including inflammatory bowel diseases, irritable bowel syndrome, and diabetic enteropathy [
8,
15,
16].
Early studies on ExM focused primarily on brain tissues, where the relatively low collagen content and soft extracellular matrix (ECM) facilitated isotropic expansion with minimal structural disruption [
3]. However, when ExM was extended to peripheral tissues, such as skin and muscle, researchers encountered difficulties due to the higher collagen content and more rigid ECM components in these tissues [
17,
18,
19]. These factors can hinder uniform expansion, potentially leading to tissue deformation and compromising the resolution. To meet this challenge, several ExM protocols were developed to address the specific needs of peripheral tissues. For instance, enzymatic digestion steps, such as the use of collagenase, have been applied to break down the collagen network present in many peripheral tissues [
19]. This approach has proven effective in improving the uniformity of tissue expansion in areas rich in collagen-rich tissues.
In the present work, we applied a modified ExM protocol for the ENS in the mouse colon. By relying on proteinase K (ProK) digestion alone, we aimed to achieve tissue expansion while maintaining the native organization of neurons and glial cells. This approach, which emphasizes neural tissue preservation without over-reliance on ECM degradation, marks a novel attempt to extend ExM to the study of the ENS. This study not only demonstrates the utility of ExM in studying the ENS, but also provides a framework for applying this technique to other smooth muscle-containing tissues, such as blood vessels, trachea and urinary bladder. The ability to visualize networks of neurons and glial cells at a high resolution opens new avenues for research on the peripheral nervous system.
2. Experimental Design
2.1. Overall Study Design
This protocol was designed to establish ExM as a reliable method for the ENS in the mouse colon. The aim was not to reveal new biological features per se, but rather to define the methodological conditions that allow isotropic expansion of ENS tissues while preserving cellular architecture. The study focused on the myenteric plexus, chosen because of its well-defined organization and accessibility after removal of the mucosa and submucosa.
Unlike protocols for collagen-rich tissues, which often require collagenase digestion, our design relied solely on ProK to achieve expansion. This choice was based on the relatively low collagen content within myenteric ganglia, reducing the need for additional enzymatic treatment. By avoiding collagenase, the protocol minimizes the risk of over-digestion, structural distortion, and variability across preparations.
To validate reproducibility, the protocol incorporates multiple biological replicates, independent tissue segments from each colon, and comparative imaging before and after expansion. The workflow integrates both reduced nicotinamide adenine dinucleotide phosphate–diaphorase (NADPH-d) histochemistry (to label neurons) and glial fibrillary acidic protein (GFAP) immunofluorescence (to label enteric glial cells), enabling the assessment of ExM across different cellular components of the ENS.
2.2. Animals and Sampling Strategy
Adult Balb/c mice (3–5 months old, weighing 19–23 g, with an approximately equal sex ratio) were used for all experiments. The animals were housed under standard laboratory conditions with free access to food and water and were maintained on a 12 h light/dark cycle. All experimental procedures were approved by the Animal Care and Use Committee of the Hebrew University–Hadassah Medical School, and were performed in accordance with the National Institutes of Health guidelines for the care and use of laboratory animals.
For each staining group (NADPH-diaphorase histochemistry and GFAP immunofluorescence), tissues were obtained from three independent mice. From each animal, three distal colonic segments (approximately 5 mm in length) were excised and processed independently. This design yielded a total of nine samples per staining group, ensuring both biological and technical replicates.
The colon was carefully removed, opened along the mesenteric border, and pinned flat in a dissection dish lined with silicone elastomer. The mucosa and most of the submucosa were removed, leaving preparations of the external muscle layers with the myenteric plexus exposed. These preparations were used for all subsequent staining and expansion steps.
2.3. Staining Design
To visualize distinct cellular populations within the ENS, two complementary labeling approaches were employed prior to tissue expansion.
Neuronal labeling was achieved using NADPH-d histochemistry, which selectively stains nitrergic neurons. This method provides robust cytoplasmic staining that clearly delineates neuronal somata and processes under brightfield microscopy. The strong contrast of NADPH-d labeling makes it particularly suitable for assessing changes in neuronal morphology before and after expansion.
Glial labeling was performed by immunofluorescence staining for GFAP, a widely used marker for enteric glial cells. GFAP immunolabeling allows for visualization of the characteristic thin rim of cytoplasm surrounding the large nucleus and the fine glial processes extending into the ganglia. This enabled us to evaluate the ability of ExM to resolve glial structures that are not easily discernible with conventional light microscopy.
Staining for NADPH-d was performed as described previously [
20]. NADPH-d and GFAP staining procedures allowed direct comparison of the same tissue before and after expansion under identical imaging conditions, thereby ensuring that structural differences observed were attributable to the expansion process, rather than to variations in staining.
Negative controls were included by omitting the primary antibody during GFAP immunostaining, ensuring the specificity of the fluorescent signal.
2.4. Expansion Procedure Design
The following protocol is based on Asano et al., with several modifications [
21]. Details on the chemicals and solutions are presented in
Table 1.
2.4.1. Anchoring
To ensure covalent linkage of biomolecules to the hydrogel, tissues were incubated overnight in Acryloyl-X, SE (AcX). This anchoring step is critical for maintaining the relative positions of proteins and labeled structures during subsequent digestion and swelling.
2.4.2. Gelation
Following anchoring, samples were embedded in a polyacrylamide-based swellable hydrogel. The gelation mixture was freshly prepared on ice and contained monomers and crosslinkers supplemented with 4-hydroxy-TEMPO (4HT), ammonium persulfate (APS), and TEMED in a defined ratio. Small tissue fragments (~2.5 × 2.5 mm) were flattened under a coverslip during polymerization. This configuration prevents tissue folding or distortion.
2.4.3. Digestion
After gelation, excess gel was trimmed off, and tissues were incubated in a digestion buffer containing ProK at 50 °C overnight. ProK was selected as the sole enzymatic treatment for ENS tissue, avoiding the use of collagenase that is typically recommended for collagen-rich tissues. Preliminary observations showed that collagenase digestion was unnecessary in myenteric plexus preparations, where collagen is sparse within the ganglia, and could even cause structural degradation.
2.4.4. Expansion
Gels were immersed in deionized water and allowed to swell through three sequential 15 min washes. This process enabled isotropic expansion, typically yielding a 3–5-fold linear increase in tissue dimensions.
2.5. Imaging and Quantification
To evaluate the effectiveness of the expansion protocol, tissues were imaged both before and after expansion under identical conditions. Maintaining consistent imaging parameters was essential to ensure that observed differences reflected the expansion process rather than technical variability.
2.5.1. Imaging Platforms
NADPH-diaphorase-labeled tissues were visualized using brightfield microscopy with a water immersion 50× objective. This provided clear images of neuronal somata and fibers in both pre- and post-expansion states.
GFAP-immunostained tissues were visualized using widefield fluorescence microscopy with a water immersion 40× objective. Fluorescent signals were collected using standard filter sets for Alexa Fluor 594 and DAPI.
For both modalities, camera exposure, gain, illumination intensity, and acquisition software settings were kept constant between pre- and post-expansion imaging.
2.5.2. Quantification of Expansion Factor
To determine the linear expansion, neuronal dimensions were measured before and after expansion. Specifically, the major and minor neuronal axes were recorded from digital images using calibrated image analysis software ImageJ (v1.8.0, NIH, Bethesda, MD, USA). The expansion factor was calculated as the ratio of the post-expansion to pre-expansion dimension for each axis.
2.5.3. Assessment of Isotropy and Distortion
Expansion isotropy was evaluated by comparing the expansion factors in the X and Y dimensions. Anisotropy was expressed as the percentage difference between the two axes relative to the mean expansion factor.
2.6. Reproducibility and Expected Outcomes
To ensure reproducibility, multiple levels of biological and technical replication were incorporated into the protocol. For each staining group, tissues were obtained from three mice, and three distal colonic segments were excised from each animal. This provided nine independent preparations per group, which were processed and analyzed separately. Within each preparation, multiple neuronal somata were measured, enabling assessment of both within-sample and between-sample consistency.
The expansion process yielded highly reproducible results across different animals and tissue segments. Linear expansion factors typically ranged from 3- to 5-fold, with minimal variability between samples. Measurements of neuronal and glial somata consistently demonstrated a proportional increase in both the major and minor axes, confirming that tissue expansion was nearly isotropic. The average anisotropy was approximately 5–7%, in agreement with previously reported ExM studies in other tissue types, indicating that minor deviations in isotropy do not compromise overall structural fidelity [
22].
As expected, structures that were poorly resolved in unexpanded preparations became clearly visible after expansion. Neuronal somata exhibited well-defined boundaries, neuronal fibers were readily distinguished, and glial cells displayed their characteristic thin rim of GFAP-labeled cytoplasm and fine processes. These features, which were not resolvable under conventional light microscopy alone, could be systematically visualized after expansion.
3. Materials and Equipment
3.1. Animals
Adult Balb/c mice (3–5 months old, weighing 19–23 g, with an approximately equal sex ratio) were used. All experimental procedures were approved by the Animal Care and Use Committee of the Hebrew University–Hadassah Medical School and conformed to the National Institutes of Health guidelines for the care and use of laboratory animals.
3.2. Reagents and Chemicals
3.3. Antibodies and Staining Reagents
Rabbit anti-GFAP (Dako, Z0334, Glostrup, Denmark), used at 1:250 dilution.
Donkey anti-rabbit IgG Alexa Fluor 594 (Abcam, ab150068, Cambridge, UK), used at 1:300 dilution.
DAPI (Sigma-Aldrich, D9542, St. Louis, MO, USA), used at 1:500 for nuclear staining.
Nitroblue tetrazolium (NBT) (Sigma-Aldrich, N6876), 0.2 mg mL−1 for NADPH-diaphorase staining.
NADPH (Sigma-Aldrich, N7505), 0.5 mg mL−1 for NADPH-diaphorase staining.
3.4. Consumables
Glass-bottom dishes with 13 mm wells (MatTek Corporation, Ashland, MA, USA).
Coverslips (No. 1.5 thickness).
Silicone elastomer-coated dissection dish.
Fine forceps and dissection pins.
3.5. Equipment
Brightfield microscope (Leitz, 50× objective, Oberkochen, Germany) for NADPH-d imaging.
Fluorescence microscope (Zeiss Axioskop, Oberkochen, Germany, 40× objective with Alexa Fluor filter sets) for GFAP imaging.
Digital camera (Pixera Penguin 600CL, San Jose, CA, USA) for image acquisition.
Incubator (Memmert IN30, Schwabach, Germany) for gelation at 37 °C and digestion at 50 °C.
Software: ImageJ v1.8.0 (NIH, Bethesda, MD, USA) for image measurement and expansion factor calculation.
4. Detailed Procedure
4.1. Tissue Preparation and Fixation
Sacrifice adult Balb/c mice (3–5 months old, 19–23 g) by CO2 inhalation.
Open the abdominal cavity and carefully remove the colon.
Place the colon immediately into cold Krebs solution (NaCl 118 mM, KCl 4.7 mM, MgSO4 1.2 mM, NaH2PO4 1.5 mM, NaHCO3 14.5 mM, glucose 11.5 mM, CaCl2 2.5 mM), bubbled with 95% O2/5% CO2.
Open the colon along the mesenteric border and pin flat in a silicone elastomer-lined dish.
Remove the mucosa and most of the submucosa, leaving the external muscle layers with the myenteric plexus exposed.
Fix the tissue in 4% paraformaldehyde (PFA, in PBS) for 30 min at room temperature.
Wash three times in PBS, 10 min each.
4.2. Staining Procedures
Note: All staining is performed prior to expansion to enable a direct comparison of pre- and post-expansion images.
4.2.1. NADPH-Diaphorase Histochemistry (Neuronal Labeling)
Incubate fixed tissue in 0.3% Triton X-100 in 0.1 M Tris buffer, pH 7.4 for 20 min at 37 °C.
Transfer to reaction solution containing 0.2 mg mL−1 NBT and 0.5 mg mL−1 NADPH in Tris buffer. Incubate at 37 °C for 30 min.
Stop the reaction by washing twice in PBS.
4.2.2. GFAP Immunofluorescence (Glial Labeling)
Quench autofluorescence in 50 mM NH4Cl for 1 h at room temperature. Wash 3 × 10 min in PBS.
Block and permeabilize in 3% BSA + 0.3% Triton X-100 in PBS for 4 h at room temperature.
Incubate with rabbit anti-GFAP antibody (1:250 in PBS + 1% BSA) for 48 h at 4 °C.
Wash 3 × 30 min in PBS.
Incubate with donkey anti-rabbit Alexa Fluor 594 (1:300 in PBS + 1% BSA) and DAPI (1:500) overnight at room temperature in the dark.
Wash 3 × 30 min in PBS.
4.3. Anchoring
Cut stained tissue into ~2.5 × 2.5 mm segments.
Incubate overnight at room temperature in 0.1 mg mL−1 Acryloyl-X, SE (AcX) in PBS with gentle shaking.
Wash 2 × 15 min in PBS.
4.4. Gelation
Prepare the gelling solution fresh according to
Table 1 (monomers + crosslinker + 4HT + TEMED + APS, mixed in a 47:1:1:1 ratio), keep on ice.
Immerse tissues in the gelling solution for 30 min at 4 °C in the dark.
Transfer tissue into a 13 mm glass-bottom dish containing 20 µL gelling solution. Flatten tissue gently under a coverslip with a droplet of gelling solution to avoid folding.
Allow polymerization at 37 °C for 2 h.
Remove coverslip and trim off excess gel. Shape asymmetrically to facilitate orientation during later steps.
4.5. Digestion
Transfer gels into 2 mL digestion buffer containing ProK (see
Table 1).
Incubate overnight at 50 °C.
Note: ProK digestion alone is sufficient for ENS tissue; collagenase is unnecessary and may damage ganglionic structure.
4.6. Expansion
Transfer gels into excess deionized water and incubate for 15 min.
Replace with fresh water and repeat for 2 additional cycles (3 × 15 min total).
Monitor expansion by measuring gel dimensions at each step. A 3–5-fold linear increase is typically achieved.
4.7. Imaging and Quantification
Image tissues before and after expansion, using the same optics and identical imaging parameters. (NADPH-d samples: brightfield microscopy; GFAP samples: widefield fluorescence microscopy).
Acquire images with identical exposure, illumination, and gain settings.
Measure the major and minor axes of neuronal somata using ImageJ.
Calculate expansion factor as post-expansion/pre-expansion size.
Assess isotropy by comparing expansion factors in X and Y dimensions; calculate anisotropy as percentage deviation.
6. Comment
In this work, we identified the optimal conditions for applying ExM to the myenteric plexus in the mouse colon. Rather than introducing new structural features of the ENS, our aim was to determine the appropriate methodological approach to expand the ENS while preserving its architecture. This represents a first step in adapting ExM for ENS and visceral organs in general, allowing for future high-resolution studies of peripheral neural networks.
Previous applications of ExM have largely focused on brain tissues, where the sparse ECM and very low collagen content made expansion quite straightforward [
22,
23,
24,
25,
26]. Peripheral tissues, such as the GI tract, pose challenges for ExM, due to their dense ECM. However, we found that in the ENS, ProK digestion alone proved to be sufficient, without compromising structural integrity. Prior studies on collagen-rich tissues like skin and cornea required enzymatic treatments, such as the use of collagenase to achieve consistent expansion [
19]. Myenteric ganglia contain little connective tissue, but the muscle layers surrounding it are rich with collagen [
9]. Also, a small amount of submucosal collagen very likely remained adhering to the circular muscle. In spite of that, the use of collagenase was not essential. Still, we obtained a relatively high degree of anisotropy, and for future refinement of the method, the use of this enzyme may be considered.
Results showed that by optimizing the protocol for the ENS, we achieved expansion while preserving the fine details of neuronal and glial structures. Using a collagenase-free approach, we simplified the protocol, reducing the potential for over-digestion and distortion, which can be problematic in collagenase-treated tissues. The successful expansion allowed us to visualize neuronal structures at a scale that was previously unachievable with conventional microscopy. Understanding the structural organization of the ENS is key to unraveling the mechanism’s underlying gut function and its dysregulation.
As shown in
Figure 1, ExM is highly suitable for bright field microscopy. In most previous studies on ExM, fluorescence microscopy was used, and in very few cases it was applied for bright field [
27], which is available in practically every light microscope.
The GFAP staining of enteric glial cells observed in this study aligns with previous findings that describe a thin rim of GFAP-labeled cytoplasm surrounding the large nucleus [
28]. This characteristic morphology, attributed to the limited cytoplasmic content of enteric glia, was clearly visualized in our expanded tissue samples (
Figure 2B). The ExM method provided enhanced clarity of glial processes and their spatial relationships within the myenteric plexus. These observations highlight the utility of ExM in corroborating and extending prior structural descriptions of enteric glial cells.
Despite the satisfactory results, several limitations should be pointed out. Although ExM allowed a better visualization of ENS structures, it did not fully resolve the intricate organelle details of the neurons. However, this can be overcome by using confocal microscopy of the expanded tissue. It should be remembered that after expansion, the tissue became about X4 thicker, and obviously confocal microscopy would greatly improve the image quality. As stated above, our aim was to employ conventional microscopy as a proof of principle. Another limitation is some tissue distortion during the expansion process. Quantification of expansion factors in the X and Y directions revealed anisotropy of approximately 7%, which is close to the previously reported value of 5% anisotropy in ExM [
22]. Future refinements in expansion protocols may further minimize such distortion.