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Article

Design, Synthesis, and Evaluation of X-ray Crystal Structure, Biological Activities, DFT Calculations, and Molecular Docking of Phenyl Imidazolidin-2-One Derivatives

1
Hunan Provincial Key Laboratory for Biology and Control of Weeds, Hunan Agricultura Biotechnology Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China
2
State Key Laboratory of the Discovery and Development of Novel Pesticide, Shenyang Sinochem Agrochemicals R & D Co. Ltd., Shenyang 110021, China
3
College of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China
*
Authors to whom correspondence should be addressed.
Crystals 2020, 10(8), 713; https://doi.org/10.3390/cryst10080713
Submission received: 16 June 2020 / Revised: 14 August 2020 / Accepted: 17 August 2020 / Published: 18 August 2020

Abstract

Eight phenyl imidazolinone derivatives were synthesized from N2-(2,4-dimethylphenyl)-N1-methyformamidine (DPMF) via scaffold-hopping method using the ring-closure approach. The prepared compounds were verified using 1H and 13C NMR and HRMS spectroscopies. The structure of compound 3c was confirmed by single-crystal X-ray diffraction analysis. The mean plane of the phenyl and imidazolinone moieties was almost coplanar with an angle of 8.85(4)°. In the crystal, molecules were interlinked with intermolecular hydrogen bonds (N–H···O and C–H···O), generating a network structure. Additionally, compound 3f displayed the highest insecticidal activity (86.7%) against Plutella xylostella at 600 mg/L, which was significantly higher than the insecticidal activity (23.0%) of DPMF. Also, compound 3d displayed good fungicidal activities against Phytophthora capsici, Phytophthora sojae, and Phytophthora infestans. Density functional theory (DFT) calculations were performed to explain the insecticidal and fungicidal activities of phenyl imidazolidin-2-one derivatives, especially potent compounds 3f and 3d. Moreover, the binding modes of compounds 3ah and DPMF against octopamine receptor of Plutella xylostella were studied by homology modeling and molecular docking. Therefore, a preliminary structure–activity relationship (SAR) was derived and discussed. These results encourage the exploration of novel insecticides and fungicides based on DPMF.
Keywords: synthesis; crystal structure; imidazolinones; insecticidal activity; fungicidal activity synthesis; crystal structure; imidazolinones; insecticidal activity; fungicidal activity
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MDPI and ACS Style

Deng, X.; Jin, C.; Xie, Y.; Gao, J.; Zhou, X. Design, Synthesis, and Evaluation of X-ray Crystal Structure, Biological Activities, DFT Calculations, and Molecular Docking of Phenyl Imidazolidin-2-One Derivatives. Crystals 2020, 10, 713. https://doi.org/10.3390/cryst10080713

AMA Style

Deng X, Jin C, Xie Y, Gao J, Zhou X. Design, Synthesis, and Evaluation of X-ray Crystal Structure, Biological Activities, DFT Calculations, and Molecular Docking of Phenyl Imidazolidin-2-One Derivatives. Crystals. 2020; 10(8):713. https://doi.org/10.3390/cryst10080713

Chicago/Turabian Style

Deng, Xile, Can Jin, Yong Xie, Junbo Gao, and Xiaomao Zhou. 2020. "Design, Synthesis, and Evaluation of X-ray Crystal Structure, Biological Activities, DFT Calculations, and Molecular Docking of Phenyl Imidazolidin-2-One Derivatives" Crystals 10, no. 8: 713. https://doi.org/10.3390/cryst10080713

APA Style

Deng, X., Jin, C., Xie, Y., Gao, J., & Zhou, X. (2020). Design, Synthesis, and Evaluation of X-ray Crystal Structure, Biological Activities, DFT Calculations, and Molecular Docking of Phenyl Imidazolidin-2-One Derivatives. Crystals, 10(8), 713. https://doi.org/10.3390/cryst10080713

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