Digital Technologies and Open Data Sources in Marine Biotoxins’ Risk Analysis: The Case of Ciguatera Fish Poisoning
Abstract
:1. Introduction
2. Background
2.1. Digital Technologies
2.2. Open Data Sources
2.3. Risk Analysis in Food Safety
3. Literature Research Method
4. Result
4.1. Digital Technologies
4.2. Open Data Sources
5. Discussion
5.1. Research Question Revisited
5.2. Further Remarks on the Findings
6. Limitations, Conclusions and Future Research
Supplementary Materials
Funding
Institutional Review Board Statement
Informed Consent Statement
Conflicts of Interest
References
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Item | Description | ||||
---|---|---|---|---|---|
Time Period | 2010 to Date | ||||
Boolean Operators | AND/OR | ||||
Keywords | 1: Digital Technology | 2: Open Data | 3: Risk Analysis | 4: Biotoxins | 5: CFP |
Digital technolog* 1 | Open data | Risk analysis | Biotoxin* | Ciguatera | |
Digital tool* | Big data | Risk management | Marine toxin* | Ciguatoxin* | |
Digital media | Public data | Risk communication | Phycotoxin* | ||
Digital transformation | Open source* | Risk* | |||
Digitalization | Data* | ||||
Information technolog* | |||||
ICT(s) | |||||
Social media | |||||
Language | English | ||||
Availability | Documents available online as full text | ||||
Research Discipline | All subject areas (indicatively: Pharmacology, Toxicology and Pharmaceutics; Agricultural and Biological Sciences; Environmental Science; Medicine; Chemistry; Immunology and Microbiology; Biochemistry, Genetics and Molecular Biology; Engineering; Veterinary; Earth and Planetary Sciences; Chemical Engineering; Health Professions; Multidisciplinary; Computer Science; Arts and Humanities; Social Sciences) | ||||
Exclusion Criteria | Articles unrelated to intended subject (keywords with other semantic way) | ||||
Publication type | All available types (Article, Review, Book, Book chapter, Conference paper, Conference review, Letter, Editorial, Note, Short survey, Business article or Press, Erratum, Data paper) |
Keyword Group/Keywords Found | Number of Studies * |
---|---|
Digital Technologies | 16 |
Software | 3 |
Smartphone | 3 |
Website | 7 |
Digital technologies | 1 |
Social media | 2 |
Open Data | 33 |
Database | 28 |
Big data | 1 |
Dataset/data | 4 |
Total Selected | 38 |
Geographic Coverage | Organization/Website ID | Source Type | Nature of CFP-Related Data | Link (1) | Reference (2) |
---|---|---|---|---|---|
Worldwide | 3i Interactive Key and Taxonomic Database Software | Public database and software | Taxonomic species identification | http://dmitriev.speciesfile.org/ http://dmitriev.speciesfile.org/key.asp?key=Bacillariales&lng=En&i=1&keyN=1 | [37] and PW |
Worldwide | AlgaeBase | Public database | Algal species information | https://www.algaebase.org/ http://www.algaebase.org/search/genus/detail/?genus_id=45535 | [33] |
Worldwide | Barcode of Life Data System (BOLD) | Public database and open data portal | DNA-based species identification | http://www.boldsystems.org/ | [36,56,57] |
Worldwide | Bayesian Evolutionary Analysis Sampling Trees (BEAST)—Tracer | Open-source software | Molecular sequencing/Phylogenetic analysis | http://beast.community/index.html http://beast.community/tracer | [36] |
Worldwide | Bayesian Tip-association Significance testing (BaTS) | Open-source software | Phylogenetic analysis | http://evolve.zoo.ox.ac.uk/Evolve/BaTS.html | [36] and PW |
Worldwide | FishBase—A Global Information System on Fishes | Public database | Ciguateric fish species | https://www.fishbase.in/search.php (Information by topic/Uses/Ciguatera) https://www.fishbase.in/Topic/List.php?group=27 | [36,39,55,57,61] |
Worldwide | FishSource—Sustainable Fisheries Partnership | Public database | Status of fisheries, fish stocks, and aquaculture | https://www.fishsource.org/ | [70] |
Worldwide | GenBank | Public database and open data portal | Genetic sequence (algal species and ciguateric fish) | https://www.ncbi.nlm.nih.gov/genbank/ https://www.ncbi.nlm.nih.gov/genbank/ftp/ | [56,57,59] and PW |
Worldwide | Global Biodiversity Information Facility (GBIF)—Integrated Publishing Toolkit (IPT) | Open data portal | Biodiversity (reef fish, invertebrates and algae, HABs, water quality) | https://www.gbif.org/ https://www1.usgs.gov/obis-usa/ipt/ https://www.gbif.org/dataset/search | [41,50] and PW |
Worldwide | Intergovernmental Oceanographic Commission of UNESCO—Harmful Algal Bloom Programme/IOC-UNESCO Taxonomic Reference List of Harmful Micro Algae | Public database | Harmful microalgal species information | http://www.marinespecies.org/hab/ | [66] |
Worldwide | MrBayes: Bayesian Inference of Phylogeny | Open-source software | Phylogenetic and evolutionary models | http://nbisweden.github.io/MrBayes/index.html http://nbisweden.github.io/MrBayes/download.html | [36] and PW |
Worldwide | National Aeronautics and Space Administration (NASA)/Ocean Color & Physical Oceanography Distributed Active Archive Center (PO.DAAC) | Public database, maps and open data portal | Sea surface temperature, salinity, density | https://oceancolor.gsfc.nasa.gov/ https://oceandata.sci.gsfc.nasa.gov/ https://podaac.jpl.nasa.gov/ | [45] |
Worldwide | National Aeronautics and Space Administration (NASA)/Worldview EOSDIS (Worldview app) and Earth Science Data Systems (ESDS) program (Earthdata) | Public database, maps and open data portal | Satellite-derived sea surface temperature | https://worldview.earthdata.nasa.gov/ https://search.earthdata.nasa.gov/search | [33] and PW |
Worldwide | National Oceanic and Atmospheric Administration (NOAA)—Coral Reef Watch (CRW) | Public database and maps | Coral Reef Satellite Monitoring | https://coralreefwatch.noaa.gov/satellite/index.php | [67] |
Worldwide | NOAA—Physical Sciences Laboratory (PSL) | Open data portal | Climate, sea surface temperature | https://psl.noaa.gov/data/gridded/ https://psl.noaa.gov/data/gridded/data.noaa.oisst.v2.html | [51,67] |
Worldwide | NOAA—National Centers for Environmental Information (NCEI) (formerly National Climate Data Center) | Public database, maps and open data portal | Environmental (atmospheric, coastal, geophysical & oceanic) | https://www.ncei.noaa.gov/ https://www.ncei.noaa.gov/access https://www.ncei.noaa.gov/products/world-ocean-database | [45,68] and PW |
Worldwide | Ocean Biodiversity Information System (OBIS) | Open data portal and public maps | Toxic algal species occurrence | https://obis.org/ https://mapper.obis.org/ https://obis.org/manual/access/ | [14,60,66] |
Worldwide | The Met Office UK—Hadley Centre Sea Ice and Sea Surface Temperature data set (HadISST) | Open data portal | Climate, sea surface temperature | https://www.metoffice.gov.uk/hadobs/hadisst/ https://www.metoffice.gov.uk/hadobs/hadisst/data/download.html | [58] and PW |
Worldwide | UNESCO–IOC–ICES–PICES/Harmful Algae Event Database (HAEDAT) | Public database and maps | HAB events | http://haedat.iode.org/ http://envlit.ifremer.fr/var/envlit/storage/documents/parammaps/haedat/ | [11,14,53,60,63,65,66] |
Worldwide | World Register of Marine Species (WoRMS) | Public database | Marine organisms’ taxonomy (algae and fish) | http://www.marinespecies.org/index.php | [52] |
European Union | European Commission—Rapid Alert System for Food and Feed (RASFF) | Public database | Occurrence in foods | https://webgate.ec.europa.eu/rasff-window/portal/?event=SearchForm&cleanSearch=1 https://webgate.ec.europa.eu/rasff-window/portal/?event=SearchByKeyword&NewSearch=1&Keywords=cigua | [53,54] and PW |
France, Italy, Monaco | RAMOGE/Regional workshop on monitoring and management strategies for benthic HABs | Open documents repository | Various informational | http://www.ramoge.org/fr/news.aspx?id=112 | [11] |
Canary Islands | Gobierno de Canarias | Open documents repository | CFP occurrence data, general information on CFP intoxication in Canary islands | https://www.gobiernodecanarias.org/agp/sgt/temas/estadistica/pesca/index.html https://www.gobiernodecanarias.org/agp/sgt/galerias/doc/estadisticas/pesca/Estadistica-ciguatera-2017_2018.ods https://www3.gobiernodecanarias.org/sanidad/scs/contenidoGenerico.jsp?idDocument=bb1799ed-b4c0-11de-ae50-15aa3b9230b7&idCarpeta=3ec36999-d4e1-11e2-8241-7543da9dbb8a | [70] |
America | Pan American Health Organization/Institutional Repository for Information sharing | Open documents repository | Various informational | https://iris.paho.org/ | [11,44] and PW |
America (various territories) | NOAA—Environmental Sensitivity Index (ESI) and Geographical Information System (GIS) Mapping | Public database, maps | Benthic habitat data | https://response.restoration.noaa.gov/esi_download | [68] |
United States of America | Centers for Disease Control and Prevention (CDC)—National Center for Environmental Health | Open documents repository | General information, Ciguateric fish species, HAB events, statistics | https://www.cdc.gov/nceh/ciguatera/default.htm https://www.cdc.gov/nceh/ciguatera/fish.htm https://www.cdc.gov/habs/index.html | [11,34,43] and PW |
United States of America | Centers for Disease Control and Prevention (CDC)—Foodborne Disease Outbreak Surveillance System | Open documents repository | Foodborne outbreaks’ occurrence | https://www.cdc.gov/fdoss/annual-reports/index.html | |
United States of America | CDC—National Outbreak Reporting System (NORS) | Public database, maps and statistics, open data portal | Outbreaks’ occurrence by etiology, year, state, primary mode, setting | https://wwwn.cdc.gov/norsdashboard/ (select Etiology → Ciguatoxin) | |
United States of America | CDC—One Health Harmful Algal Bloom System (OHHABS) | Open documents repository | HABs-related human and animal illnesses & environmental data | https://www.cdc.gov/habs/ohhabs.html https://www.cdc.gov/habs/ohhabs_tables_and_figures.html | [62] |
United States of America | Food and Drug Administration (FDA) | Open documents repository | Public policies, Ciguateric fish species, Fish and Fishery Products Hazards and Controls Guidance (CFP included) | www.fda.gov/Food/GuidanceRegulation/GuidanceDocumentsRegulatoryInformation/Seafood/ucm2018426.htm https://www.fda.gov/media/80748/download https://www.federalregister.gov/documents/2013/11/22/2013-27913/guidance-for-industry-on-purchasing-reef-fish-species-associated-with-the-hazard-of-ciguatera-fish https://www.fda.gov/media/80637/download | [33,43] and PW |
Florida/US | Florida Complaint & Outbreak Reporting System (FL-CORS) | Public database | Online food and waterborne illness complaint forms | https://www.flcors.com/Home.aspx https://www.flcors.com/FWSupport | [34] |
Florida/US | Coral Reef Evaluation and Monitoring Project (CREMP) | Open data portal | Coral reefs | https://www1.usgs.gov/obis-usa/ipt/resource?r=coralreefevaluationandmonitoringproject-1999 | [50] and PW |
Florida/US | Southeast Environmental Research Center (SERC)—Water Quality Monitoring Network | Open documents repository | Water quality monitoring | http://serc.fiu.edu/wqmnetwork/ http://serc.fiu.edu/wqmnetwork/Report%20Archive/report%20index.htm | [50] and PW |
Florida/US | NOAA—National Hurricane Center (NHC) | Public database, open data portal | Tropical cyclones reporting (North Atlantic and eastern North Pacific basins) | https://www.nhc.noaa.gov/ https://www.ncei.noaa.gov/access/search/index | [68] |
Hawaii | NOAA—Central Pacific Hurricane Center | Public database, open data portal | Tropical cyclones reporting (central Pacific) | https://www.nhc.noaa.gov/ | [68] |
Hawaii | State of Hawaii/Department of Health Disease Outbreak Control Division | Open documents repository | Case reports and statistics | https://health.hawaii.gov/docd/resources/reports/summary-of-reported-cases-of-notifiable-diseases/ | [11] |
Caribbean countries | Caribbean Epidemiology Center (CAREC) | Open documents repository | Epidemiology | https://iris.paho.org/handle/10665.2/2961 | [14,44,60] |
Caribbean countries | Caribbean Public Health Agency (CARPHA) CARPHA EvIDeNCe portal | Open documents repository | Public health data | https://carpha.org/Portals/0/Documents/CARPHA-State_of_Public_Health_Inaugural_Report_2013.pdf http://carphaevidenceportal.bvsalud.org/ | [14,60] and PW |
Caribbean countries | Caribbean Coastal Ocean Observing System (CARICOOS)—Part of Integrated Ocean Observing System (IOOS) | Open data portal, public database and maps | Climate, sea surface temperature, algae index, chlorophyll concentration | https://www.caricoos.org/ https://www.caricoos.org/data-download https://www.caricoos.org/ecosystem-and-water-quality https://www.caricoos.org/#!?detail=SelectOceanColor | [41,68] and PW |
Caribbean + Gulf of Mexico | University of South Florida- College of Marine Science-Optical Oceanography Laboratory/Satellite-based Sargassum Watch System (SaWS) | Open data portal, public database and maps | Sargassum sp. seaweed presence/changes | https://optics.marine.usf.edu/projects/SaWS.html Interoperability with CARICOOS: https://www.caricoos.org/oceans/observation/modis_aqua/ECARIBE/afai | [41] |
Mexico | Gobierno de México/Comisión Federal de Protección Contra Riesgos Sanitarios (COFEPRIS) | Open documents repository | HAB events | https://www.gob.mx/cofepris/acciones-y-programas/antecedentes-en-mexico-76707 | [60] and PW |
Australia | Australian Government Department of Health (AGDH)/Communicable Diseases Intelligence | Scientific journal (open access) | Epidemiology, surveillance, prevention & control | https://www1.health.gov.au/internet/main/publishing.nsf/Content/cdi-search | [11,35] and PW |
Australia | AGDH—OzFoodNet | Open documents repository | Foodborne diseases’ surveillance | https://www1.health.gov.au/internet/main/publishing.nsf/Content/cdna-ozfoodnet-reports.htm | |
Australia | Safefish—National Ciguatera Fish Poisoning Research Strategy | Open documents repository | Risk mitigation information | https://www.safefish.com.au/-/media/fish-safefish/documents/technical-reports/national-ciguatera-fish-poisoning-research-strategy-final.ashx | [11] and PW |
Australia | Sydney Fish Market | Open documents repository | Seafood handling guidelines (incl. CFP) | https://www.sydneyfishmarket.com.au/Seafood-Trading/Quality/Food-Safety https://www.sydneyfishmarket.com.au/Portals/0/adam/Content/41UIctIuJECV0p4vxMVS4Q/ButtonLink/Seafood%20Handling%20Guidelines.pdf | [33] |
Cook Islands | Cook Islands Ministry of Health/Te Marae Ora | Open documents repository | Cases statistics 2000–2016 (by year & month) | https://www.health.gov.ck/wp-content/uploads/2018/01/2016-National-Health-Information-Bulletin.pdf | [67] and PW |
Fiji | Ministry of Health and Medical Services of Fiji | Open documents repository | Outbreak response guidelines | http://www.health.gov.fj/publications/ http://www.health.gov.fj/wp-content/uploads/2018/08/Fiji-Communicable-Disease-Surveillance-and-Outbreak-Response-Guidelines-2016-1.pdf | [11] |
French Polynesia | Institut Louis Malardé—Ciguatera website | Open documents repository, public database and maps | General information, Ciguateric fish species, epidemiology mapping, surveillance and statistics, various documents | http://www.ciguatera.pf/ https://www.ciguatera.pf/images/poissons/CATALOGUE%20BR%20.pdf https://www.ciguatera.pf/index.php/fr/consultation-et-declaration https://www.ciguatera.pf/index.php/fr/la-ciguatera/surveillance-et-statistiques https://www.ciguatera.pf/index.php/fr/la-ciguatera/videos-et-medias | [11,33,39,41,51,61,64] |
New Zealand | New Zealand Ministry of Health/Institute of Environmental Science and Research Ltd. (ESR)/Public Health Surveillance | Open documents repository | Outbreaks occurrence at annual and monthly basis | https://surv.esr.cri.nz/surveillance/annual_outbreak.php https://surv.esr.cri.nz/surveillance/monthly_surveillance.php | [52] and PW |
South Pacific | Pacific Community/South Pacific Epidemiological and Health Information Services (SPEHIS) | Open documents repository | Epidemiology, health data (years: 1974–1996) | https://www.spc.int/DigitalLibrary/PHD/Collection/SPEHIS_SIESPS | [11,40,44,55,58] |
Hong Kong | The Government of the Hong Kong special administrative region—Center for Food Safety | Open documents repository | General information, code of practice | https://www.cfs.gov.hk/english/multimedia/multimedia_pub/multimedia_pub_fsf_69_02.html https://www.cfs.gov.hk/english/whatsnew/whatsnew_fsf/whatsnew_fsf_poison_fish.html | [11,61] |
Hong Kong | The Government of the Hong Kong special administrative region—Department of Health | Open documents repository | Annual case reports, press releases | https://www.search.gov.hk/result?tpl_id=stdsearch&ui_lang=en&ui_charset=utf-8&gp1=dh_home&gp0=dh_home&site=dh_home&web=this&query=ciguatera | [11] |
Open Data Source Type | Total Instances |
---|---|
Open documents repository | 22 |
Public database | 22 |
Open data portal | 15 |
Public maps | 12 |
Public/open source software | 5 |
Open access journal | 1 |
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Katikou, P. Digital Technologies and Open Data Sources in Marine Biotoxins’ Risk Analysis: The Case of Ciguatera Fish Poisoning. Toxins 2021, 13, 692. https://doi.org/10.3390/toxins13100692
Katikou P. Digital Technologies and Open Data Sources in Marine Biotoxins’ Risk Analysis: The Case of Ciguatera Fish Poisoning. Toxins. 2021; 13(10):692. https://doi.org/10.3390/toxins13100692
Chicago/Turabian StyleKatikou, Panagiota. 2021. "Digital Technologies and Open Data Sources in Marine Biotoxins’ Risk Analysis: The Case of Ciguatera Fish Poisoning" Toxins 13, no. 10: 692. https://doi.org/10.3390/toxins13100692
APA StyleKatikou, P. (2021). Digital Technologies and Open Data Sources in Marine Biotoxins’ Risk Analysis: The Case of Ciguatera Fish Poisoning. Toxins, 13(10), 692. https://doi.org/10.3390/toxins13100692