Deciphering Single Nucleotide Polymorphisms and Evolutionary Trends in Isolates of the Cydia pomonella granulovirus
Abstract
:1. Introduction
2. Materials and Methods
2.1. CpGV Isolates and Sequences
2.2. Genome Sequencing
2.3. Genome Analysis
2.4. Phylogenetic Analysis
3. Results and Discussion
Supplementary Materials
Acknowledgments
Author Contributions
Conflicts of Interest
References
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Genome Feature | CpGV Isolate | ||||
---|---|---|---|---|---|
M | I12 | E2 | S | I07 | |
sequencing method | 454 | Sanger | 454 | 454 | 454 |
average coverage | 17.23 | 3.9 | 243 | 22.21 | 8.05 |
genome length (bp) | 123,529 | 124,269 | 123,858 | 123,193 | 120,816 |
coding (bp) | 113,121 | 113,145 | 111,822 | 111,372 | 109,635 |
(% of total size) | (91.57) | (91.05) | (90.28) | (90.40) | (90.75) |
non-coding (bp) | 10,408 | 11,124 | 12,036 | 11,821 | 11,181 |
(% of total size) | (8.43) | (8.95) | (9.72) | (9.60) | (9.25) |
GC% | 45.27 | 45.21 | 45.21 | 45.28 | 45.39 |
number of open reading frames (ORF) | 142 | 142 | 140 | 140 | 137 |
ORFs with identical amino acid (aa) compared to CpGV-M | 137 | 77 | 76 | 48 |
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Wennmann, J.T.; Radtke, P.; Eberle, K.E.; Gueli Alletti, G.; Jehle, J.A. Deciphering Single Nucleotide Polymorphisms and Evolutionary Trends in Isolates of the Cydia pomonella granulovirus. Viruses 2017, 9, 227. https://doi.org/10.3390/v9080227
Wennmann JT, Radtke P, Eberle KE, Gueli Alletti G, Jehle JA. Deciphering Single Nucleotide Polymorphisms and Evolutionary Trends in Isolates of the Cydia pomonella granulovirus. Viruses. 2017; 9(8):227. https://doi.org/10.3390/v9080227
Chicago/Turabian StyleWennmann, Jörg T., Pit Radtke, Karolin E. Eberle, Gianpiero Gueli Alletti, and Johannes A. Jehle. 2017. "Deciphering Single Nucleotide Polymorphisms and Evolutionary Trends in Isolates of the Cydia pomonella granulovirus" Viruses 9, no. 8: 227. https://doi.org/10.3390/v9080227
APA StyleWennmann, J. T., Radtke, P., Eberle, K. E., Gueli Alletti, G., & Jehle, J. A. (2017). Deciphering Single Nucleotide Polymorphisms and Evolutionary Trends in Isolates of the Cydia pomonella granulovirus. Viruses, 9(8), 227. https://doi.org/10.3390/v9080227